INFERNAL1/a [1.1.5 | Sep 2023] NAME STnc480 ACC RF02068 DESC Enterobacterial sRNA STnc480 STATES 220 NODES 66 CLEN 72 W 103 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 12:39:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02068/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.053711 CKSUM 2679394391 NULL 0.000 0.000 0.000 0.000 GA 72.00 TC 75.30 NC 65.50 EFP7GF -8.9859 0.71885 ECMLC 0.50092 -8.21565 3.45405 1600000 414861 0.002893 ECMGC 0.38952 -16.29183 -1.91677 1600000 108106 0.003700 ECMLI 0.49779 -5.13491 5.59055 1600000 249972 0.004801 ECMGI 0.42472 -10.69322 1.57762 1600000 73360 0.005453 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 103 146 -6.998 -7.205 -0.051 -5.619 IL 1 1 2 1 4 1 23 105 148 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 105 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 22 103 146 -8.011 -0.020 -6.665 -0.337 -0.568 0.671 -0.086 D 4 2 3 5 3 0 17 101 143 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 104 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 21 102 145 -8.011 -0.020 -6.665 0.285 0.009 -1.041 0.367 D 7 5 3 8 3 0 16 100 142 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 103 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 20 101 144 -8.011 -0.020 -6.665 1.324 -1.602 -0.527 -1.081 D 10 8 3 11 3 0 15 99 142 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 20 102 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 19 100 143 -8.011 -0.020 -6.665 -0.783 0.069 -1.544 1.019 D 13 11 3 14 3 0 15 98 141 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 19 101 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 18 99 142 -8.011 -0.020 -6.665 1.738 -2.466 -2.088 -2.018 D 16 14 3 17 3 0 14 97 140 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 18 100 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 18 98 141 -8.011 -0.020 -6.665 1.738 -2.466 -2.088 -2.018 D 19 17 3 20 3 0 13 96 139 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 17 99 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 17 97 140 -8.011 -0.020 -6.665 1.738 -2.466 -2.088 -2.018 D 22 20 3 23 3 0 12 95 138 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 16 98 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 16 96 139 -8.011 -0.020 -6.665 1.738 -2.466 -2.088 -2.018 D 25 23 3 26 3 0 12 94 137 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 16 97 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 15 95 138 -8.011 -0.020 -6.665 1.738 -2.466 -2.088 -2.018 D 28 26 3 29 3 0 11 93 136 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 15 96 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 14 94 137 -8.011 -0.020 -6.665 1.738 -2.466 -2.088 -2.018 D 31 29 3 32 3 0 10 92 135 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 14 95 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - a - - - ML 33 32 3 35 3 1 13 93 136 -8.398 -0.151 -3.379 0.865 -0.961 -1.089 0.257 D 34 32 3 35 3 0 10 92 134 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 14 94 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 79 - G - - MR 36 35 3 38 3 1 15 92 135 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 37 35 3 38 3 0 8 89 132 -7.192 -2.370 -0.322 IR 38 38 3 38 3 1 13 93 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 78 - g - - MR 39 38 3 41 3 1 14 91 134 -8.268 -0.020 -6.585 -0.237 -0.446 0.453 0.068 D 40 38 3 41 3 0 7 88 130 -7.192 -2.370 -0.322 IR 41 41 3 41 3 1 13 92 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 77 - u - - MR 42 41 3 44 3 1 14 90 133 -8.268 -0.020 -6.585 -0.285 0.076 -0.492 0.500 D 43 41 3 44 3 0 7 86 129 -7.192 -2.370 -0.322 IR 44 44 3 44 3 1 12 91 133 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 76 - G - - MR 45 44 3 47 3 1 13 89 132 -3.486 -0.151 -6.585 -0.528 -1.304 1.050 -0.267 D 46 44 3 47 3 0 6 82 125 -7.192 -2.370 -0.322 IR 47 47 3 47 3 1 13 94 136 -0.624 -1.592 -5.675 0.000 0.000 0.000 0.000 [ MATR 16 ] - 68 - a - - MR 48 47 3 50 3 1 13 71 89 -8.268 -0.020 -6.585 0.883 -1.306 0.197 -0.726 D 49 47 3 50 3 0 6 69 87 -7.192 -2.370 -0.322 IR 50 50 3 50 3 1 11 72 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 67 - G - - MR 51 50 3 53 3 1 12 70 88 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 52 50 3 53 3 0 6 68 86 -7.192 -2.370 -0.322 IR 53 53 3 53 3 1 11 71 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 66 - c - - MR 54 53 3 56 3 1 11 69 87 -8.268 -0.020 -6.585 0.382 0.473 -1.109 -0.244 D 55 53 3 56 3 0 5 67 85 -7.192 -2.370 -0.322 IR 56 56 3 56 3 1 10 70 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 65 - G - - MR 57 56 3 59 3 1 11 68 86 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 58 56 3 59 3 0 5 66 84 -7.192 -2.370 -0.322 IR 59 59 3 59 3 1 10 69 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 64 - G - - MR 60 59 3 62 3 1 10 67 85 -8.268 -0.020 -6.585 -0.528 -1.304 1.050 -0.267 D 61 59 3 62 3 0 4 65 83 -7.192 -2.370 -0.322 IR 62 62 3 62 3 1 9 68 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 63 - A - - MR 63 62 3 65 3 1 9 66 84 -8.268 -0.020 -6.585 1.675 -2.184 -1.835 -1.708 D 64 62 3 65 3 0 4 64 83 -7.192 -2.370 -0.322 IR 65 65 3 65 3 1 9 67 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 62 - C - - MR 66 65 3 68 3 1 8 65 83 -8.268 -0.020 -6.585 -0.819 1.020 -1.619 0.111 D 67 65 3 68 3 0 4 63 82 -7.192 -0.690 -1.422 IR 68 68 3 68 3 1 7 66 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 61 - U - - MR 69 68 3 71 3 1 8 64 82 -8.398 -0.018 -6.716 -0.622 -0.950 -0.702 1.149 D 70 68 3 71 3 0 2 62 81 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 7 65 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 60 - a - - MR 72 71 3 74 3 1 7 63 81 -8.398 -0.018 -6.716 0.865 -0.961 -1.089 0.257 D 73 71 3 74 3 0 1 61 80 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 6 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 59 - A - - MR 75 74 3 77 3 1 6 62 80 -8.398 -0.018 -6.716 1.312 -1.591 -0.498 -1.067 D 76 74 3 77 3 0 1 60 79 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 5 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 58 - u - - MR 78 77 3 80 3 1 5 61 79 -8.398 -0.018 -6.716 -0.033 -0.810 -0.521 0.812 D 79 77 3 80 3 0 0 59 78 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 4 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 57 - A - - MR 81 80 3 83 3 1 4 60 78 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 82 80 3 83 3 0 0 58 77 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 4 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 56 - A - - MR 84 83 3 86 3 1 3 59 77 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 85 83 3 86 3 0 0 57 76 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 55 - A - - MR 87 86 3 89 3 1 2 58 76 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 88 86 3 89 3 0 0 56 75 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 2 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 54 - A - - MR 90 89 3 92 3 1 1 57 75 -8.398 -0.420 -2.001 1.738 -2.466 -2.088 -2.018 D 91 89 3 92 3 0 0 55 74 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 2 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 53 - A - - MR 93 92 3 95 3 1 3 56 75 -8.002 -0.024 -6.319 1.493 -1.627 -1.332 -1.105 D 94 92 3 95 3 0 0 54 73 -8.005 -1.593 -0.589 IR 95 95 3 95 3 1 2 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 52 - A - - MR 96 95 3 98 3 1 3 55 74 -8.144 -0.022 -6.462 1.003 -0.960 -0.999 -0.027 D 97 95 3 98 3 0 0 52 71 -7.644 -2.822 -0.228 IR 98 98 3 98 3 1 2 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 51 - u - - MR 99 98 3 101 3 1 3 54 72 -8.144 -0.022 -6.462 -0.533 0.415 -1.290 0.648 D 100 98 3 101 3 0 0 52 70 -7.644 -2.822 -0.228 IR 101 101 3 101 3 1 1 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 50 - A - - MR 102 101 3 104 3 1 2 53 71 -8.144 -0.022 -6.462 1.601 -1.922 -1.599 -1.423 D 103 101 3 104 3 0 0 51 70 -7.644 -2.822 -0.228 IR 104 104 3 104 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 49 - A - - MR 105 104 3 107 3 1 1 52 70 -8.144 -0.022 -6.462 1.601 -1.922 -1.599 -1.423 D 106 104 3 107 3 0 0 51 69 -7.644 -0.469 -1.874 IR 107 107 3 107 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 48 - A - - MR 108 107 3 110 3 1 1 51 69 -8.398 -0.018 -6.716 1.246 -1.261 -1.274 -0.327 D 109 107 3 110 3 0 0 49 68 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 47 - U - - MR 111 110 3 113 3 1 1 50 68 -8.398 -0.018 -6.716 -1.572 -1.554 -2.310 1.642 D 112 110 3 113 3 0 0 48 67 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 46 - C - - MR 114 113 3 116 3 1 1 49 67 -8.398 -0.018 -6.716 -1.855 1.654 -2.682 -1.246 D 115 113 3 116 3 0 0 47 66 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 45 - G - - MR 117 116 3 119 3 1 1 48 66 -8.398 -0.018 -6.716 -1.680 -2.916 1.745 -2.303 D 118 116 3 119 3 0 0 46 65 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 44 - A - - MR 120 119 3 122 3 1 1 47 65 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 121 119 3 122 3 0 0 45 64 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 43 - U - - MR 123 122 3 125 3 1 1 46 64 -8.398 -0.018 -6.716 -1.572 -1.554 -2.310 1.642 D 124 122 3 125 3 0 0 44 63 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 42 - A - - MR 126 125 3 128 3 1 1 45 63 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 127 125 3 128 3 0 0 43 62 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 41 - C - - MR 129 128 3 131 3 1 1 44 62 -8.398 -0.018 -6.716 -1.855 1.654 -2.682 -1.246 D 130 128 3 131 3 0 0 42 61 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 40 - A - - MR 132 131 3 134 3 1 1 43 61 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 133 131 3 134 3 0 0 41 60 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 39 - A - - MR 135 134 3 137 3 1 1 42 60 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 136 134 3 137 3 0 0 40 59 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 38 - C - - MR 138 137 3 140 3 1 1 41 59 -8.398 -0.018 -6.716 -1.855 1.654 -2.682 -1.246 D 139 137 3 140 3 0 0 39 58 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 37 - C - - MR 141 140 3 143 3 1 1 40 58 -8.398 -0.018 -6.716 -1.855 1.654 -2.682 -1.246 D 142 140 3 143 3 0 0 38 57 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 36 - U - - MR 144 143 3 146 3 1 1 39 57 -8.398 -0.018 -6.716 -1.572 -1.554 -2.310 1.642 D 145 143 3 146 3 0 0 37 56 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 35 - A - - MR 147 146 3 149 3 1 1 38 56 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 148 146 3 149 3 0 0 36 55 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 34 - A - - MR 150 149 3 152 3 1 1 37 55 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 151 149 3 152 3 0 0 35 54 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 33 - A - - MR 153 152 3 155 3 1 1 36 54 -8.398 -0.018 -6.716 1.738 -2.466 -2.088 -2.018 D 154 152 3 155 3 0 0 34 53 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 32 - A - - MR 156 155 3 158 5 1 1 35 53 -7.134 -0.038 -6.950 -7.162 -8.053 1.738 -2.466 -2.088 -2.018 D 157 155 3 158 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 12 31 G C - - MP 159 158 3 163 6 2 2 34 52 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -3.589 -2.600 -3.608 0.816 -3.959 -4.070 0.321 -4.024 -3.664 3.248 -4.044 -0.404 0.025 -0.825 -1.576 -2.637 ML 160 158 3 163 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 13 30 C G - - MP 165 164 6 169 6 2 2 32 50 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -4.655 -4.570 -4.327 -0.793 -3.022 -4.725 3.582 -3.843 -4.380 -0.567 -4.629 -2.519 0.482 -4.717 -0.731 -3.216 ML 166 164 6 169 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 14 29 C G - - MP 171 170 6 175 6 2 2 30 48 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -4.655 -4.570 -4.327 -0.793 -3.022 -4.725 3.582 -3.843 -4.380 -0.567 -4.629 -2.519 0.482 -4.717 -0.731 -3.216 ML 172 170 6 175 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 15 28 A U - - MP 177 176 6 181 6 2 2 28 46 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -3.878 -2.887 -3.890 3.385 -4.271 -5.342 0.034 -3.926 -3.778 0.985 -4.330 -0.349 -0.383 -4.515 -1.906 -2.719 ML 178 176 6 181 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 16 27 C G - - MP 183 182 6 187 6 2 2 26 44 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -4.655 -4.570 -4.327 -0.793 -3.022 -4.725 3.582 -3.843 -4.380 -0.567 -4.629 -2.519 0.482 -4.717 -0.731 -3.216 ML 184 182 6 187 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 17 26 G C - - MP 189 188 6 193 6 2 2 24 42 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -4.837 -3.139 -4.945 0.137 -5.366 -4.731 -0.707 -5.194 -4.389 3.660 -4.720 -0.842 -1.090 -4.530 -2.750 -3.821 ML 190 188 6 193 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 18 25 G C - - MP 195 194 6 199 6 2 2 22 40 -9.127 -9.066 -0.021 -7.843 -8.122 -8.517 -4.837 -3.139 -4.945 0.137 -5.366 -4.731 -0.707 -5.194 -4.389 3.660 -4.720 -0.842 -1.090 -4.530 -2.750 -3.821 ML 196 194 6 199 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 19 24 u a - - MP 201 200 6 205 4 2 2 20 38 -6.998 -7.205 -0.051 -5.619 -0.464 -2.595 -2.696 0.720 -2.340 -3.503 1.592 -2.807 -2.731 0.893 -3.259 -0.847 2.567 -2.861 -0.246 -1.785 ML 202 200 6 205 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 205 205 5 205 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 20 - u - - - ML 207 206 6 209 3 1 1 16 35 -8.011 -0.020 -6.665 0.178 -0.867 -1.180 0.910 D 208 206 6 209 3 0 0 16 34 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 21 - c - - - ML 210 209 3 212 3 1 1 15 33 -8.011 -0.020 -6.665 -0.822 0.850 -1.627 0.388 D 211 209 3 212 3 0 0 15 33 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 22 - u - - - ML 213 212 3 215 3 1 1 13 31 -8.011 -0.020 -6.665 0.178 -0.867 -1.180 0.910 D 214 212 3 215 3 0 0 13 32 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 23 - c - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 0.237 0.688 -1.273 -0.328 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME STnc480 ACC RF02068 DESC Enterobacterial sRNA STnc480 LENG 72 MAXL 171 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 12:39:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02068/CM NSEQ 6 EFFN 2.370117 CKSUM 2679394391 STATS LOCAL MSV -8.8302 0.71885 STATS LOCAL VITERBI -9.3167 0.71885 STATS LOCAL FORWARD -3.6692 0.71885 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.95424 1.55882 1.56433 1.63331 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 0.00000 * 1 1.66262 1.79280 0.88120 1.47151 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 2 1.18562 1.36559 2.14203 1.13384 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 3 0.43913 2.57889 1.76302 2.22548 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 4 1.99768 1.32740 2.53082 0.65471 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 5 0.15261 3.25330 2.97600 2.95861 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 6 0.15261 3.25330 2.97600 2.95861 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 7 0.15261 3.25330 2.97600 2.95861 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 8 0.15261 3.25330 2.97600 2.95861 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 9 0.15261 3.25330 2.97600 2.95861 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 10 0.15261 3.25330 2.97600 2.95861 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 11 0.76537 2.09331 2.18536 1.20691 11 a - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 12 2.08513 2.51932 0.39864 2.08779 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 13 3.20942 0.23700 2.98627 2.11902 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 14 3.21025 0.23691 2.98666 2.11916 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 15 0.33627 2.78895 1.84386 2.71990 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 16 3.20912 0.23703 2.98613 2.11896 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 17 2.59330 3.25312 0.16785 3.19200 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 18 2.59290 3.25264 0.16794 3.19133 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 19 1.77884 1.56497 1.85202 0.76539 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 20 1.26583 2.03206 2.25322 0.73009 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 21 2.02950 0.75844 2.59749 1.12165 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 22 1.26583 2.03206 2.25322 0.73009 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 23 1.22502 0.86961 2.33303 1.66005 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 24 0.77481 2.02484 1.38748 1.84840 24 a - - > 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 25 3.39232 0.19880 3.08766 2.29217 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 26 3.39392 0.19866 3.08836 2.29247 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 27 2.39677 3.15409 0.20462 2.96906 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 28 2.94826 2.13975 2.60125 0.28011 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 29 2.39850 3.15646 0.20412 2.97190 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 30 2.39979 3.15822 0.20375 2.97403 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 31 2.64872 0.39852 2.33890 1.82318 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 32 0.15261 3.25330 2.97600 2.95861 32 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 33 0.15261 3.25330 2.97600 2.95861 33 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 34 0.15261 3.25330 2.97600 2.95861 34 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 35 0.15261 3.25330 2.97600 2.95861 35 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 36 2.62308 2.58481 3.14102 0.21224 36 U - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 37 2.86333 0.19799 3.43948 2.40278 37 C - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 38 2.86333 0.19799 3.43948 2.40278 38 C - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 39 0.15261 3.25330 2.97600 2.95861 39 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 40 0.15261 3.25330 2.97600 2.95861 40 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 41 2.86333 0.19799 3.43948 2.40278 41 C - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 42 0.15261 3.25330 2.97600 2.95861 42 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 43 2.62308 2.58481 3.14102 0.21224 43 U - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 44 0.15261 3.25330 2.97600 2.95861 44 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 45 2.71473 3.59458 0.14583 3.17006 45 G - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 46 2.86333 0.19799 3.43948 2.40278 46 C - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 47 2.62308 2.58481 3.14102 0.21224 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 48 0.49334 2.31742 2.33325 1.64037 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.25670 3.94729 1.57457 1.46634 0.26236 1.09861 0.40547 49 0.24005 2.84313 2.60682 2.50837 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.04871 3.73930 3.73930 1.46634 0.26236 2.54369 0.08183 50 0.24005 2.84313 2.60682 2.50837 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.04871 3.73930 3.73930 1.46634 0.26236 2.54369 0.08183 51 1.80369 1.07147 2.33511 0.92632 51 u - - : 1.38629 1.38629 1.38629 1.38629 0.04871 3.73930 3.73930 1.46634 0.26236 2.54369 0.08183 52 0.66671 2.08704 2.11955 1.41689 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.17519 3.73930 1.98826 1.46634 0.26236 2.54369 0.08183 53 0.31179 2.61555 2.40179 2.26163 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.05510 3.61920 3.61920 1.46634 0.26236 0.12146 2.16832 54 0.15261 3.25330 2.97600 2.95861 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 55 0.15261 3.25330 2.97600 2.95861 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 56 0.15261 3.25330 2.97600 2.95861 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 57 0.15261 3.25330 2.97600 2.95861 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 58 1.42031 1.98388 1.75251 0.80411 58 u - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 59 0.44787 2.57046 1.74078 2.21520 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 60 0.76537 2.09331 2.18536 1.20691 60 a - - : 1.38629 1.38629 1.38629 1.38629 0.03938 3.94729 3.94729 1.46634 0.26236 1.09861 0.40547 61 1.88160 2.10358 1.89488 0.55287 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.15170 3.94729 2.10830 1.46634 0.26236 1.09861 0.40547 62 2.03174 0.63491 2.59603 1.33053 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.04396 3.83955 3.83955 1.46634 0.26236 2.11507 0.12854 63 0.19221 3.04225 2.78591 2.72626 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.04396 3.83955 3.83955 1.46634 0.26236 2.11507 0.12854 64 1.81411 2.35785 0.61402 1.60335 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.04396 3.83955 3.83955 1.46634 0.26236 2.11507 0.12854 65 2.49472 3.34250 0.18866 2.91751 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.04396 3.83955 3.83955 1.46634 0.26236 2.11507 0.12854 66 1.11656 1.02416 2.20526 1.59318 66 c - - : 1.38629 1.38629 1.38629 1.38629 0.04396 3.83955 3.83955 1.46634 0.26236 2.11507 0.12854 67 2.49472 3.34250 0.18866 2.91751 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.04396 3.83955 3.83955 1.46634 0.26236 2.11507 0.12854 68 0.75262 2.35166 1.23207 1.95213 68 a - - : 1.38629 1.38629 1.38629 1.38629 0.15806 2.08186 3.83955 1.90265 0.16155 2.11507 0.12854 69 1.81411 2.35785 0.61402 1.60335 76 G - - : 1.38629 1.38629 1.38629 1.38629 0.04396 3.83955 3.83955 1.46634 0.26236 2.11507 0.12854 70 1.61233 1.31686 1.72825 1.03562 77 u - - : 1.38629 1.38629 1.38629 1.38629 0.04396 3.83955 3.83955 1.46634 0.26236 2.11507 0.12854 71 1.58335 1.70210 1.03751 1.35450 78 g - - : 1.38629 1.38629 1.38629 1.38629 0.04396 3.83955 3.83955 1.46634 0.26236 2.11507 0.12854 72 2.49472 3.34250 0.18866 2.91751 79 G - - : 1.38629 1.38629 1.38629 1.38629 0.02222 3.81782 * 1.46634 0.26236 0.00000 * //