INFERNAL1/a [1.1.5 | Sep 2023] NAME STnc310 ACC RF02067 DESC Salmonella enterica sRNA STnc310 STATES 192 NODES 55 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 20:58:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02067/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 2.160156 CKSUM 3121186323 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 65.30 NC 38.70 EFP7GF -9.4784 0.71929 ECMLC 0.62165 -8.32984 1.52607 1600000 549627 0.002183 ECMGC 0.40582 -17.19810 -3.42709 1600000 106935 0.003741 ECMLI 0.54422 -7.50781 2.87493 1600000 341311 0.003516 ECMGI 0.44704 -11.79355 -0.22098 1600000 70605 0.005665 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 77 97 -7.039 -7.247 -0.050 -5.661 IL 1 1 2 1 4 1 23 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 22 77 97 -8.435 -0.099 -3.972 1.448 -1.767 -0.827 -1.272 D 4 2 3 5 3 0 18 76 95 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 22 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - G - - MR 6 5 3 8 3 1 22 76 96 -8.354 -0.019 -6.671 -0.610 -1.005 1.205 -0.884 D 7 5 3 8 3 0 16 74 94 -6.955 -2.133 -0.388 IR 8 8 3 8 3 1 21 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 62 - G - - MR 9 8 3 11 3 1 21 75 95 -8.354 -0.019 -6.671 -0.133 -1.769 1.234 -1.176 D 10 8 3 11 3 0 16 73 93 -6.955 -2.133 -0.388 IR 11 11 3 11 3 1 20 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 61 - G - - MR 12 11 3 14 3 1 21 74 94 -8.354 -0.019 -6.671 -1.578 -2.798 1.723 -2.185 D 13 11 3 14 3 0 15 72 92 -6.955 -2.133 -0.388 IR 14 14 3 14 3 1 20 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 60 - G - - MR 15 14 3 17 3 1 20 73 93 -8.354 -0.019 -6.671 -0.133 -1.769 1.234 -1.176 D 16 14 3 17 3 0 15 71 91 -6.955 -2.133 -0.388 IR 17 17 3 17 3 1 19 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 59 - U - - MR 18 17 3 20 3 1 19 72 92 -8.354 -0.019 -6.671 -0.742 0.063 -1.500 1.003 D 19 17 3 20 3 0 14 70 90 -6.955 -2.133 -0.388 IR 20 20 3 20 3 1 18 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 58 - A - - MR 21 20 3 23 3 1 18 71 91 -8.354 -0.019 -6.671 1.719 -2.370 -2.002 -1.912 D 22 20 3 23 3 0 14 69 89 -6.955 -2.133 -0.388 IR 23 23 3 23 3 1 18 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 57 - G - - MR 24 23 3 26 3 1 17 70 90 -8.354 -0.107 -3.869 -0.766 -1.625 1.291 -0.642 D 25 23 3 26 3 0 13 68 88 -6.955 -2.133 -0.388 IR 26 26 3 26 3 1 17 71 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 56 - U - - MR 27 26 3 29 3 1 17 69 89 -8.267 -0.020 -6.584 -0.530 -0.856 -0.705 1.099 D 28 26 3 29 3 0 13 67 87 -7.367 -1.253 -0.800 IR 29 29 3 29 3 1 17 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - U - - MR 30 29 3 32 3 1 16 68 88 -8.354 -0.019 -6.671 -0.192 -0.907 -1.324 1.132 D 31 29 3 32 3 0 12 66 86 -6.955 -2.133 -0.388 IR 32 32 3 32 3 1 16 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 54 - U - - MR 33 32 3 35 3 1 15 67 87 -8.354 -0.019 -6.671 -0.192 -0.907 -1.324 1.132 D 34 32 3 35 3 0 12 65 85 -6.955 -2.133 -0.388 IR 35 35 3 35 3 1 15 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 53 - U - - MR 36 35 3 38 3 1 14 66 86 -8.354 -0.019 -6.671 -1.484 -1.481 -2.217 1.618 D 37 35 3 38 3 0 11 64 84 -6.955 -2.133 -0.388 IR 38 38 3 38 3 1 14 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 52 - U - - MR 39 38 3 41 3 1 13 65 85 -8.354 -0.019 -6.671 -1.484 -1.481 -2.217 1.618 D 40 38 3 41 3 0 11 63 83 -6.955 -2.133 -0.388 IR 41 41 3 41 3 1 13 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 51 - G - - MR 42 41 3 44 3 1 12 64 84 -8.354 -0.019 -6.671 -1.578 -2.798 1.723 -2.185 D 43 41 3 44 3 0 11 62 82 -6.955 -2.133 -0.388 IR 44 44 3 44 3 1 13 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - C - - MR 45 44 3 47 2 1 11 63 83 -8.356 -0.004 -1.739 1.624 -2.563 -1.153 D 46 44 3 47 2 0 10 62 82 -5.018 -0.045 IR 47 47 3 47 2 1 12 64 84 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 16 ] - - - - - - B 48 47 3 49 105 0 10 62 82 [ BEGL 17 ] - - - - - - S 49 48 1 50 4 0 0 33 52 -0.043 -6.880 -6.288 -6.928 [ MATP 18 ] 2 20 U A - - MP 50 49 1 54 6 2 2 33 52 -9.143 -9.082 -0.021 -7.859 -8.139 -8.534 -4.393 -4.223 -4.209 -0.504 -3.108 -4.754 1.224 -3.818 -4.212 -0.278 -4.575 -2.116 3.417 -4.537 -0.780 -3.015 ML 51 49 1 54 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 1 54 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 1 54 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 3 19 U A - - MP 56 55 6 60 6 2 2 31 50 -9.143 -9.082 -0.021 -7.859 -8.139 -8.534 -4.393 -4.223 -4.209 -0.504 -3.108 -4.754 1.224 -3.818 -4.212 -0.278 -4.575 -2.116 3.417 -4.537 -0.780 -3.015 ML 57 55 6 60 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 4 18 G C - - MP 62 61 6 66 6 2 2 29 48 -9.143 -9.082 -0.021 -7.859 -8.139 -8.534 -4.913 -3.176 -5.029 0.085 -5.473 -4.760 -0.795 -5.283 -4.438 3.677 -4.763 -0.882 -1.175 -4.579 -2.841 -3.903 ML 63 61 6 66 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 5 17 U A - - MP 68 67 6 72 4 2 2 27 46 -7.039 -7.247 -0.050 -5.661 -4.393 -4.223 -4.209 -0.504 -3.108 -4.754 1.224 -3.818 -4.212 -0.278 -4.575 -2.116 3.417 -4.537 -0.780 -3.015 ML 69 67 6 72 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 71 67 6 72 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 72 72 5 72 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 73 73 6 73 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 6 - G - - - ML 74 73 6 76 3 1 1 24 43 -8.050 -0.019 -6.704 -1.762 -3.010 1.762 -2.397 D 75 73 6 76 3 0 0 23 42 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 7 - A - - - ML 77 76 3 79 3 1 1 23 41 -8.050 -0.019 -6.704 1.754 -2.544 -2.159 -2.104 D 78 76 3 79 3 0 0 22 41 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 8 - C - - - ML 80 79 3 82 3 1 1 22 40 -8.050 -0.019 -6.704 -1.950 1.676 -2.779 -1.321 D 81 79 3 82 3 0 0 21 39 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 9 - A - - - ML 83 82 3 85 3 1 1 20 39 -8.050 -0.019 -6.704 1.754 -2.544 -2.159 -2.104 D 84 82 3 85 3 0 0 19 38 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 10 - U - - - ML 86 85 3 88 3 1 1 19 38 -3.921 -0.113 -6.704 -1.645 -1.614 -2.386 1.661 D 87 85 3 88 3 0 0 17 36 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 20 39 -1.648 -0.663 -4.348 0.000 0.000 0.000 0.000 [ MATL 27 ] 12 - G - - - ML 89 88 3 91 3 1 1 17 36 -8.050 -0.019 -6.704 -1.762 -3.010 1.762 -2.397 D 90 88 3 91 3 0 0 17 36 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 13 - U - - - ML 92 91 3 94 3 1 1 16 35 -8.050 -0.019 -6.704 -1.645 -1.614 -2.386 1.661 D 93 91 3 94 3 0 0 16 34 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 14 - U - - - ML 95 94 3 97 3 1 1 15 33 -8.050 -0.019 -6.704 -1.645 -1.614 -2.386 1.661 D 96 94 3 97 3 0 0 15 33 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 15 - A - - - ML 98 97 3 100 3 1 1 13 31 -8.050 -0.019 -6.704 1.754 -2.544 -2.159 -2.104 D 99 97 3 100 3 0 0 13 32 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 16 - A - - - ML 101 100 3 103 2 1 1 1 1 * 0.000 1.754 -2.544 -2.159 -2.104 D 102 100 3 103 2 0 0 0 0 * 0.000 IL 103 103 3 103 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 104 103 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 105 48 1 106 3 0 1 43 62 -8.050 -0.019 -6.704 IL 106 106 2 106 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 21 - A - - - ML 107 106 2 109 3 1 1 43 62 -8.050 -0.019 -6.704 1.754 -2.544 -2.159 -2.104 D 108 106 2 109 3 0 0 41 61 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 22 - A - - - ML 110 109 3 112 3 1 1 42 61 -8.050 -0.123 -3.680 1.754 -2.544 -2.159 -2.104 D 111 109 3 112 3 0 0 40 60 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 23 - A - - - ML 113 112 3 115 3 1 1 41 60 -7.947 -0.122 -3.697 1.311 -0.897 -1.276 -0.812 D 114 112 3 115 3 0 0 39 58 -6.915 -2.428 -0.311 IL 115 115 3 115 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 24 - c - - - ML 116 115 3 118 3 1 1 40 59 -7.848 -0.022 -6.502 -0.027 0.834 -1.278 -0.279 D 117 115 3 118 3 0 0 38 57 -7.364 -0.519 -1.756 IL 118 118 3 118 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 25 - G - - - ML 119 118 3 121 5 1 1 38 57 -3.888 -0.213 -4.085 -7.196 -8.087 -0.504 -2.096 1.438 -1.510 D 120 118 3 121 5 0 0 37 56 -4.959 -0.803 -4.221 -2.596 -2.508 IL 121 121 3 121 5 1 1 39 58 -2.646 -0.409 -4.325 -6.157 -5.431 0.000 0.000 0.000 0.000 [ MATP 39 ] 27 49 C G - - MP 122 121 3 126 6 2 2 37 56 -9.107 -9.046 -0.065 -4.868 -8.103 -8.498 -4.554 -4.460 -4.243 -0.692 -2.960 -4.654 3.552 -3.770 -4.292 -0.452 -4.553 -2.407 0.554 -4.623 -0.666 -3.132 ML 123 121 3 126 6 1 1 36 55 -6.668 -7.015 -1.729 -0.679 -6.864 -4.394 -0.039 0.435 -0.738 0.105 MR 124 121 3 126 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 28 48 C G - - MP 128 127 6 132 6 2 2 35 54 -9.063 -9.003 -0.061 -7.779 -5.044 -8.454 -4.330 -4.216 -4.056 -0.469 -2.824 -4.496 3.477 -3.612 -4.099 -0.195 -4.383 -2.160 0.711 -4.413 -0.526 -2.947 ML 129 127 6 132 6 1 1 35 54 -7.043 -7.389 -0.609 -1.798 -7.239 -4.769 0.024 -0.103 0.069 0.005 MR 130 127 6 132 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 29 47 C G - - MP 134 133 6 138 4 2 2 33 52 -6.945 -7.152 -0.053 -5.566 -4.550 -4.457 -4.240 -0.688 -2.958 -4.652 3.551 -3.768 -4.289 -0.448 -4.550 -2.404 0.557 -4.620 -0.664 -3.129 ML 135 133 6 138 4 1 1 34 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 4 1 1 33 52 -5.235 -4.264 -2.131 -0.529 0.065 -0.818 0.642 -0.275 D 137 133 6 138 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 138 138 5 138 4 1 1 35 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 139 139 6 139 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 30 - g - - - ML 140 139 6 142 3 1 1 31 49 -8.352 -0.019 -6.670 0.087 -0.756 0.715 -0.505 D 141 139 6 142 3 0 0 29 48 -6.056 -0.503 -1.839 IL 142 142 3 142 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 46 - C - - MR 143 142 3 145 5 1 1 30 48 -7.168 -0.037 -6.984 -7.196 -8.087 -1.950 1.676 -2.779 -1.321 D 144 142 3 145 5 0 0 28 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 145 145 3 145 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 31 45 G C - - MP 146 145 3 150 6 2 2 29 47 -9.143 -9.082 -0.021 -7.859 -8.139 -8.534 -3.591 -0.343 -3.599 1.253 -4.156 -4.201 0.211 -4.028 -3.669 3.141 -4.063 -0.234 -0.054 -3.556 -1.698 -2.580 ML 147 145 3 150 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 3 150 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 3 150 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 32 44 C G - - MP 152 151 6 156 6 2 2 27 45 -9.143 -9.082 -0.058 -7.859 -5.123 -8.534 -4.738 -4.661 -4.396 -0.876 -3.074 -4.783 3.605 -3.903 -4.452 -0.662 -4.692 -2.611 0.421 -4.795 -0.785 -3.286 ML 153 151 6 156 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 33 43 a u - - MP 158 157 6 162 6 2 2 25 43 -9.106 -9.046 -0.021 -7.822 -8.102 -8.497 -3.420 -2.484 -3.486 2.742 -3.870 -4.599 0.450 -3.671 -3.419 2.185 -3.937 -0.047 0.133 -3.798 -1.488 -2.353 ML 159 157 6 162 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 23 42 -7.364 -6.093 -1.061 -6.071 -1.205 -4.284 -0.069 -0.437 -0.677 0.751 D 161 157 6 162 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 34 42 G C - - MP 164 163 6 168 4 2 2 23 41 -6.949 -8.194 -0.076 -4.648 -4.913 -3.176 -5.029 0.085 -5.473 -4.760 -0.795 -5.283 -4.438 3.677 -4.763 -0.882 -1.175 -4.579 -2.841 -3.903 ML 165 163 6 168 4 1 1 22 41 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 22 40 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 20 39 -12.737 -14.007 -2.036 -0.404 IL 168 168 5 168 4 1 1 22 41 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 22 41 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 41 - G - - MR 170 169 6 172 5 1 1 21 39 -7.168 -0.037 -6.984 -7.196 -8.087 -1.762 -3.010 1.762 -2.397 D 171 169 6 172 5 0 0 20 39 -5.352 -0.707 -2.978 -4.409 -2.404 IR 172 172 3 172 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 35 40 G C - - MP 173 172 3 177 4 2 2 20 38 -7.039 -7.247 -0.050 -5.661 -4.913 -3.176 -5.029 0.085 -5.473 -4.760 -0.795 -5.283 -4.438 3.677 -4.763 -0.882 -1.175 -4.579 -2.841 -3.903 ML 174 172 3 177 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 3 177 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 3 177 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 36 - U - - - ML 179 178 6 181 3 1 1 16 35 -8.050 -0.019 -6.704 -1.645 -1.614 -2.386 1.661 D 180 178 6 181 3 0 0 16 34 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 37 - G - - - ML 182 181 3 184 3 1 1 15 33 -8.050 -0.019 -6.704 -0.264 -1.935 1.330 -1.349 D 183 181 3 184 3 0 0 15 33 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 38 - U - - - ML 185 184 3 187 3 1 1 13 31 -8.050 -0.019 -6.704 -1.645 -1.614 -2.386 1.661 D 186 184 3 187 3 0 0 13 32 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 39 - a - - - ML 188 187 3 190 2 1 1 1 1 * 0.000 0.899 -1.459 0.298 -0.883 D 189 187 3 190 2 0 0 0 0 * 0.000 IL 190 190 3 190 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 191 190 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME STnc310 ACC RF02067 DESC Salmonella enterica sRNA STnc310 LENG 61 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 20:58:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02067/CM NSEQ 8 EFFN 2.730469 CKSUM 3121186323 STATS LOCAL MSV -8.4072 0.71929 STATS LOCAL VITERBI -8.7019 0.71929 STATS LOCAL FORWARD -3.6358 0.71929 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38333 1.54574 1.21601 1.42840 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 0.00000 * 1 0.33492 2.76694 2.00353 2.44309 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 2 3.19111 2.06152 2.95675 0.24894 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 3 3.18551 2.06110 2.95412 0.24948 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 4 2.70333 3.42311 0.14417 3.36195 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 5 3.17964 2.06067 2.95135 0.25005 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 6 2.88256 3.78411 0.12048 3.35845 6 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 7 0.12771 3.41879 3.12560 3.14134 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 8 3.06376 0.16243 3.63894 2.56486 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 9 0.12771 3.41879 3.12560 3.14134 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 10 2.77965 2.71505 3.30334 0.18035 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.11208 2.42957 4.02018 0.36727 1.17969 1.09861 0.40547 11 2.88256 3.78411 0.12048 3.35845 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 12 2.77965 2.71505 3.30334 0.18035 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 13 2.77965 2.71505 3.30334 0.18035 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 14 0.12771 3.41879 3.12560 3.14134 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 15 0.12771 3.41879 3.12560 3.14134 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 16 0.28399 3.13663 1.89706 2.92273 17 A - - > 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 17 3.54528 0.17259 3.25579 2.39571 18 C - - > 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 18 0.28441 3.13411 1.89672 2.91980 19 A - - > 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 19 0.28510 3.13002 1.89616 2.91505 20 A - - > 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 20 0.12771 3.41879 3.12560 3.14134 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 21 0.12771 3.41879 3.12560 3.14134 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.11991 4.02018 2.35332 1.46634 0.26236 1.09861 0.40547 22 0.42423 2.05161 2.39041 2.07462 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.12203 3.93994 2.34933 1.46634 0.26236 1.98726 0.14742 23 1.44193 0.73185 2.38551 1.65826 24 c - - - 1.38629 1.38629 1.38629 1.38629 0.04301 3.86091 3.86091 1.46634 0.26236 0.19667 1.72297 24 1.82117 3.02521 0.33185 2.63077 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.12055 2.34737 4.02018 0.34069 1.24229 1.09861 0.40547 25 2.99903 0.26058 2.92645 2.07167 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 26 2.80425 0.32520 2.58578 1.95382 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.10816 4.02018 2.47026 1.46634 0.26236 1.09861 0.40547 27 3.11752 0.24373 2.95872 2.11904 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.90376 0.16135 28 1.35871 1.93992 0.82661 1.82164 30 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.35384 1.21061 29 1.54766 2.61574 0.46289 2.46885 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 30 3.38044 0.19955 3.17733 2.25219 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.10816 4.02018 2.47026 1.46634 0.26236 1.09861 0.40547 31 0.72538 2.50620 1.07291 2.38301 33 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.35384 1.21061 32 2.69903 3.41762 0.14502 3.35442 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 33 2.68579 3.40078 0.14764 3.33139 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 34 2.77965 2.71505 3.30334 0.18035 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 35 1.62903 2.89668 0.40536 2.50184 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 36 2.77965 2.71505 3.30334 0.18035 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 37 0.72643 2.52602 1.14580 2.13351 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 38 3.55853 0.17159 3.26186 2.39820 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 39 2.88256 3.78411 0.12048 3.35845 41 G - - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 40 3.44775 0.18040 3.20974 2.37649 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 41 2.56286 1.24126 2.30823 0.62650 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 42 2.53506 3.35015 0.17110 3.14833 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 43 2.71952 0.45214 2.43031 1.56150 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 44 3.06376 0.16243 3.63894 2.56486 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.03656 4.02018 4.02018 1.46634 0.26236 1.09861 0.40547 45 2.36967 3.12827 0.21237 2.91819 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.19654 4.02018 1.82959 1.46634 0.26236 1.09861 0.40547 46 2.27942 2.98324 0.23957 2.81233 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04277 3.86641 3.86641 1.46634 0.26236 0.72560 0.66171 47 2.40507 3.16698 0.20271 2.97408 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 48 2.90096 0.19071 3.47725 2.43306 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 49 2.74651 3.63064 0.14061 3.20604 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 50 2.65223 2.60902 3.17132 0.20585 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 51 2.65223 2.60902 3.17132 0.20585 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 52 1.56290 2.10784 2.41194 0.54588 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 53 1.56290 2.10784 2.41194 0.54588 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.11618 3.95251 2.40260 1.46634 0.26236 1.89385 0.16310 54 1.84893 2.06568 1.91590 0.56448 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.04224 3.87857 3.87857 1.46634 0.26236 0.78765 0.60681 55 2.05811 2.66658 0.42104 1.92107 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 56 0.14757 3.28431 3.00399 2.99282 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 57 2.01140 1.32459 2.54564 0.65035 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 58 1.52744 2.76563 0.46847 2.36430 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 59 2.74651 3.63064 0.14061 3.20604 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 60 1.52744 2.76563 0.46847 2.36430 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03917 3.95251 3.95251 1.46634 0.26236 1.89385 0.16310 61 1.94176 2.14313 0.47279 2.15416 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.01978 3.93312 * 1.46634 0.26236 0.00000 * //