INFERNAL1/a [1.1.5 | Sep 2023] NAME STnc350 ACC RF02063 DESC Salmonella enterica sRNA STnc350 STATES 213 NODES 61 CLEN 68 W 85 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 12:18:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02063/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.660156 CKSUM 213287941 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 87.90 NC 41.00 EFP7GF -6.1591 0.72479 ECMLC 0.52162 -10.32970 1.15842 1600000 480491 0.002497 ECMGC 0.37301 -16.68114 -2.54278 1600000 78061 0.005124 ECMLI 0.55180 -6.86581 3.33281 1600000 333582 0.003597 ECMGI 0.42646 -11.18637 0.82225 1600000 67014 0.005969 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 105 -6.833 -7.040 -0.058 -5.454 IL 1 1 2 1 4 4 27 88 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 4 27 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 5 26 85 105 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 4 2 3 5 3 1 23 83 104 -6.174 -1.687 -0.566 IL 5 5 3 5 3 4 26 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 4 25 84 104 -7.858 -0.022 -6.512 -1.292 -1.323 -2.015 1.558 D 7 5 3 8 3 1 23 82 103 -6.174 -1.687 -0.566 IL 8 8 3 8 3 3 25 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 4 24 83 103 -8.256 -0.020 -6.573 -1.353 -2.536 1.666 -1.922 D 10 8 3 11 3 1 22 81 102 -5.620 -0.734 -1.403 IL 11 11 3 11 3 3 24 83 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 68 - u - - MR 12 11 3 14 3 3 24 82 102 -8.256 -0.020 -6.573 0.537 -0.797 -0.998 0.559 D 13 11 3 14 3 0 21 80 100 -6.390 -1.568 -0.620 IR 14 14 3 14 3 3 24 82 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 67 - U - - MR 15 14 3 17 3 3 23 81 101 -8.256 -0.020 -6.573 -1.292 -1.323 -2.015 1.558 D 16 14 3 17 3 0 20 79 99 -6.390 -1.568 -0.620 IR 17 17 3 17 3 2 23 81 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 66 - a - - MR 18 17 3 20 3 2 22 80 100 -8.256 -0.020 -6.573 0.600 0.220 -1.042 -0.262 D 19 17 3 20 3 0 20 78 98 -6.390 -1.568 -0.620 IR 20 20 3 20 3 2 22 80 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 65 - G - - MR 21 20 3 23 2 1 21 79 99 -8.228 -0.005 -1.353 -2.536 1.666 -1.922 D 22 20 3 23 2 0 20 78 98 -4.432 -0.068 IR 23 23 3 23 2 1 21 80 100 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 8 ] - - - - - - B 24 23 3 25 69 0 20 78 98 [ BEGL 9 ] - - - - - - S 25 24 1 26 4 0 0 29 48 -0.046 -6.777 -6.184 -6.824 [ MATP 10 ] 4 17 u g - - MP 26 25 1 30 4 2 2 29 48 -6.833 -7.040 -0.058 -5.454 -3.877 -3.789 -3.628 -0.145 -2.455 -4.089 1.826 -3.206 -3.666 0.086 -3.981 -1.797 1.008 -3.982 2.856 -2.549 ML 27 25 1 30 4 1 1 29 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 28 25 1 30 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 29 25 1 30 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 30 30 5 30 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 31 31 6 31 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 5 - A - - - ML 32 31 6 34 3 1 1 26 45 -8.256 -0.020 -6.573 1.669 -2.158 -1.812 -1.681 D 33 31 6 34 3 0 0 25 44 -5.620 -0.734 -1.403 IL 34 34 3 34 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 16 - u - - MR 35 34 3 37 5 1 1 25 44 -7.001 -0.042 -6.817 -7.029 -7.920 -0.622 0.421 -1.389 0.705 D 36 34 3 37 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 37 37 3 37 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 6 15 C G - - MP 38 37 3 42 4 2 2 24 43 -6.833 -7.040 -0.058 -5.454 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 39 37 3 42 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 40 37 3 42 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 41 37 3 42 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 42 42 5 42 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 43 43 6 43 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 7 - U - - - ML 44 43 6 46 3 1 1 21 40 -7.858 -0.022 -6.512 -1.292 -1.323 -2.015 1.558 D 45 43 6 46 3 0 0 20 39 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 8 - G - - - ML 47 46 3 49 3 1 1 20 39 -7.858 -0.022 -6.512 -1.353 -2.536 1.666 -1.922 D 48 46 3 49 3 0 0 19 38 -6.174 -1.687 -0.566 IL 49 49 3 49 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 9 - A - - - ML 50 49 3 52 3 1 1 19 38 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 51 49 3 52 3 0 0 18 37 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 10 - G - - - ML 53 52 3 55 3 1 1 18 36 -7.858 -0.022 -6.512 -1.353 -2.536 1.666 -1.922 D 54 52 3 55 3 0 0 17 36 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 11 - u - - - ML 56 55 3 58 3 1 1 16 35 -7.858 -0.022 -6.512 0.537 -0.797 -0.998 0.559 D 57 55 3 58 3 0 0 16 34 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 12 - a - - - ML 59 58 3 61 3 1 1 15 33 -7.858 -0.022 -6.512 0.685 -1.306 0.463 -0.714 D 60 58 3 61 3 0 0 15 33 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 13 - C - - - ML 62 61 3 64 3 1 1 13 32 -7.858 -0.022 -6.512 -1.486 1.548 -2.300 -0.953 D 63 61 3 64 3 0 0 13 32 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 14 - U - - - ML 65 64 3 67 2 1 1 1 1 * 0.000 -1.292 -1.323 -2.015 1.558 D 66 64 3 67 2 0 0 0 0 * 0.000 IL 67 67 3 67 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 22 ] - - - - - - E 68 67 3 -1 0 0 0 0 0 [ BEGR 23 ] - - - - - - S 69 24 1 70 3 0 7 63 82 -7.858 -0.022 -6.512 IL 70 70 2 70 3 1 7 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - a - - - ML 71 70 2 73 3 1 8 63 82 -7.858 -0.022 -6.512 0.685 -1.306 0.463 -0.714 D 72 70 2 73 3 0 2 61 81 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 6 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - A - - - ML 74 73 3 76 3 1 7 62 81 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 75 73 3 76 3 0 2 60 80 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 6 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - a - - - ML 77 76 3 79 3 1 6 60 80 -7.858 -0.022 -6.512 0.685 -1.306 0.463 -0.714 D 78 76 3 79 3 0 1 59 79 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 5 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - A - - - ML 80 79 3 82 3 1 6 59 79 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 81 79 3 82 3 0 1 58 78 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 5 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - A - - - ML 83 82 3 85 3 1 5 58 78 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 84 82 3 85 3 0 0 57 77 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 4 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - G - - - ML 86 85 3 88 3 1 5 57 77 -7.858 -0.022 -6.512 -1.353 -2.536 1.666 -1.922 D 87 85 3 88 3 0 0 56 76 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 3 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - a - - - ML 89 88 3 91 3 1 4 56 76 -7.858 -0.022 -6.512 0.685 -1.306 0.463 -0.714 D 90 88 3 91 3 0 0 55 74 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 3 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - G - - - ML 92 91 3 94 3 1 4 55 75 -7.858 -0.022 -6.512 -1.353 -2.536 1.666 -1.922 D 93 91 3 94 3 0 0 54 73 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - G - - - ML 95 94 3 97 3 1 4 54 74 -7.858 -0.022 -6.512 -1.353 -2.536 1.666 -1.922 D 96 94 3 97 3 0 0 53 72 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 2 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - G - - - ML 98 97 3 100 3 1 3 53 72 -7.858 -0.022 -6.512 -1.353 -2.536 1.666 -1.922 D 99 97 3 100 3 0 0 52 71 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 2 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - a - - - ML 101 100 3 103 3 1 3 52 71 -7.858 -0.022 -6.512 0.685 -1.306 0.463 -0.714 D 102 100 3 103 3 0 0 51 70 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - A - - - ML 104 103 3 106 3 1 2 51 70 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 105 103 3 106 3 0 0 50 69 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - U - - - ML 107 106 3 109 3 1 2 50 69 -7.858 -0.022 -6.512 -1.292 -1.323 -2.015 1.558 D 108 106 3 109 3 0 0 48 68 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - A - - - ML 110 109 3 112 5 1 1 49 68 -7.001 -0.042 -6.817 -7.029 -7.920 1.669 -2.158 -1.812 -1.681 D 111 109 3 112 5 0 0 48 67 -4.959 -0.803 -4.221 -2.596 -2.508 IL 112 112 3 112 5 1 1 49 68 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 32 64 A U - - MP 113 112 3 117 6 2 3 48 67 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 114 112 3 117 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 3 117 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 3 117 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 33 63 A U - - MP 119 118 6 123 4 2 2 46 65 -6.833 -7.040 -0.503 -1.846 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 120 118 6 123 4 1 1 46 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 4 1 1 46 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 122 118 6 123 4 0 0 45 64 -4.568 -4.250 -2.265 -0.520 IL 123 123 5 123 4 1 1 48 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 124 124 6 124 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - C - - - ML 125 124 6 127 3 1 1 43 62 -7.899 -0.026 -6.217 -0.657 1.125 -1.416 -0.304 D 126 124 6 127 3 0 0 42 61 -6.778 -0.284 -2.561 IL 127 127 3 127 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 62 - G - - MR 128 127 3 130 5 1 1 42 61 -7.001 -0.042 -6.817 -7.029 -7.920 -1.353 -2.536 1.666 -1.922 D 129 127 3 130 5 0 0 41 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 130 130 3 130 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 35 61 A U - - MP 131 130 3 135 6 2 2 41 60 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 132 130 3 135 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 3 135 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 3 135 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 36 60 A U - - MP 137 136 6 141 4 2 2 39 58 -6.759 -8.005 -0.087 -4.458 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 138 136 6 141 4 1 1 39 58 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 4 1 1 38 57 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 140 136 6 141 4 0 0 36 55 -12.737 -14.007 -2.036 -0.404 IL 141 141 5 141 4 1 1 39 58 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 142 142 6 142 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 59 - a - - MR 143 142 6 145 5 1 1 37 56 -7.001 -0.042 -6.817 -7.029 -7.920 0.685 -1.306 0.463 -0.714 D 144 142 6 145 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 145 145 3 145 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 37 58 A U - - MP 146 145 3 150 6 2 2 36 55 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 147 145 3 150 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 3 150 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 3 150 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 38 57 A U - - MP 152 151 6 156 6 2 2 34 53 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -3.621 -2.697 -3.651 3.208 -3.905 -4.953 0.384 -3.703 -3.551 1.263 -4.090 -0.203 -0.034 -4.169 -1.558 -2.496 ML 153 151 6 156 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 39 56 C G - - MP 158 157 6 162 6 2 2 32 51 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 159 157 6 162 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 40 55 G C - - MP 164 163 6 168 6 2 2 30 49 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.538 -2.997 -4.620 0.334 -4.945 -4.612 -0.360 -4.847 -4.191 3.585 -4.544 -0.690 -0.751 -4.333 -2.386 -3.500 ML 165 163 6 168 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 41 54 C G - - MP 170 169 6 174 6 2 2 28 47 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 171 169 6 174 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 42 53 C G - - MP 176 175 6 180 6 2 2 26 45 -9.065 -9.004 -0.022 -7.781 -8.060 -8.455 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 177 175 6 180 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 43 52 C G - - MP 182 181 6 186 4 2 2 24 43 -6.833 -7.040 -0.058 -5.454 -4.337 -4.223 -4.062 -0.476 -2.829 -4.502 3.480 -3.617 -4.105 -0.203 -4.388 -2.168 0.706 -4.420 -0.531 -2.953 ML 183 181 6 186 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 186 186 5 186 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 44 - A - - - ML 188 187 6 190 3 1 1 21 40 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 189 187 6 190 3 0 0 20 39 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 45 - C - - - ML 191 190 3 193 3 1 1 20 39 -7.858 -0.022 -6.512 -1.486 1.548 -2.300 -0.953 D 192 190 3 193 3 0 0 19 38 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 46 - A - - - ML 194 193 3 196 3 1 1 19 38 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 195 193 3 196 3 0 0 18 37 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 47 - U - - - ML 197 196 3 199 3 1 1 18 36 -7.858 -0.022 -6.512 -1.292 -1.323 -2.015 1.558 D 198 196 3 199 3 0 0 17 36 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 48 - A - - - ML 200 199 3 202 3 1 1 16 35 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 201 199 3 202 3 0 0 16 34 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 49 - A - - - ML 203 202 3 205 3 1 1 15 33 -7.858 -0.022 -6.512 1.669 -2.158 -1.812 -1.681 D 204 202 3 205 3 0 0 15 33 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 50 - G - - - ML 206 205 3 208 3 1 1 13 32 -7.858 -0.022 -6.512 -1.353 -2.536 1.666 -1.922 D 207 205 3 208 3 0 0 13 32 -6.174 -1.687 -0.566 IL 208 208 3 208 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 51 - C - - - ML 209 208 3 211 2 1 1 1 1 * 0.000 -1.486 1.548 -2.300 -0.953 D 210 208 3 211 2 0 0 0 0 * 0.000 IL 211 211 3 211 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 212 211 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME STnc350 ACC RF02063 DESC Salmonella enterica sRNA STnc350 LENG 68 MAXL 157 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 12:18:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02063/CM NSEQ 2 EFFN 1.652344 CKSUM 213287941 STATS LOCAL MSV -8.3185 0.72479 STATS LOCAL VITERBI -9.5580 0.72479 STATS LOCAL FORWARD -3.2346 0.72479 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.21281 1.66527 1.25474 1.47687 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23082 2.87791 2.63811 2.54632 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.27791 2.30009 2.77872 0.30770 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.31963 3.13879 0.23319 2.71280 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.61723 1.41310 2.35597 0.52966 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23082 2.87791 2.63811 2.54632 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.83645 0.34758 2.56461 1.84504 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.27791 2.30009 2.77872 0.30770 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.31963 3.13879 0.23319 2.71280 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23082 2.87791 2.63811 2.54632 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.31963 3.13879 0.23319 2.71280 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 1.01464 1.93783 2.07725 0.99920 11 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.91230 2.28958 1.06585 1.87956 12 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.41133 0.31532 2.97533 2.04241 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.27791 2.30009 2.77872 0.30770 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.12221 2.73578 0.29944 2.60157 15 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 1.81568 1.09550 2.34728 0.89827 16 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.90286 2.52043 0.39208 2.35616 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.91230 2.28958 1.06585 1.87956 18 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23082 2.87791 2.63811 2.54632 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.91230 2.28958 1.06585 1.87956 20 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23082 2.87791 2.63811 2.54632 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23082 2.87791 2.63811 2.54632 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.31963 3.13879 0.23319 2.71280 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.91230 2.28958 1.06585 1.87956 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.31963 3.13879 0.23319 2.71280 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.31963 3.13879 0.23319 2.71280 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.31963 3.13879 0.23319 2.71280 27 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.91230 2.28958 1.06585 1.87956 28 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.23082 2.87791 2.63811 2.54632 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.27791 2.30009 2.77872 0.30770 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23082 2.87791 2.63811 2.54632 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.52311 2.36359 1.54139 2.31104 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.52303 2.36376 1.54139 2.31132 33 A - - < 1.38629 1.38629 1.38629 1.38629 0.33404 3.73767 1.34643 1.46634 0.26236 1.09861 0.40547 34 1.83916 0.60862 2.36464 1.59473 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.06439 3.46801 3.46801 1.46634 0.26236 0.16808 1.86617 35 0.52547 2.35823 1.54127 2.30230 35 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.52431 2.36086 1.54133 2.30658 36 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.52588 2.35731 1.54125 2.30080 37 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.52455 2.36032 1.54132 2.30570 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.83280 0.34817 2.56312 1.84449 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.35415 2.85722 0.23952 2.80356 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.83683 0.34751 2.56477 1.84510 41 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.83730 0.34744 2.56496 1.84517 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.83742 0.34742 2.56501 1.84519 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23082 2.87791 2.63811 2.54632 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.41133 0.31532 2.97533 2.04241 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.23082 2.87791 2.63811 2.54632 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.27791 2.30009 2.77872 0.30770 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 0.23082 2.87791 2.63811 2.54632 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.23082 2.87791 2.63811 2.54632 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.31963 3.13879 0.23319 2.71280 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.41133 0.31532 2.97533 2.04241 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.11807 2.73101 0.30117 2.59523 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.11818 2.73114 0.30112 2.59540 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.11831 2.73129 0.30107 2.59560 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.02155 0.27963 2.68835 2.06185 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.11866 2.73169 0.30092 2.59613 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.54120 1.79543 2.17894 0.44315 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.54162 1.79545 2.17907 0.44307 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.91230 2.28958 1.06585 1.87956 59 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.54201 1.79547 2.17919 0.44300 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.54262 1.79550 2.17937 0.44288 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.31963 3.13879 0.23319 2.71280 62 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.53858 1.79530 2.17815 0.44364 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.53478 1.79512 2.17700 0.44437 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 2.31963 3.13879 0.23319 2.71280 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 0.97074 1.23472 2.10743 1.56670 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 67 2.27791 2.30009 2.77872 0.30770 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 68 1.01464 1.93782 2.07725 0.99920 68 u - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //