INFERNAL1/a [1.1.5 | Sep 2023] NAME STnc450 ACC RF02051 DESC Enterobacterial sRNA STnc450 STATES 180 NODES 47 CLEN 57 W 73 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 20:58:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02051/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 3.612305 CKSUM 4086404259 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 37.40 NC 36.10 EFP7GF -11.6304 0.71936 ECMLC 0.56076 -9.25889 1.58081 1600000 523622 0.002292 ECMGC 0.45132 -15.68935 -2.96092 1600000 125002 0.003200 ECMLI 0.62949 -5.80121 3.12103 1600000 329898 0.003637 ECMGI 0.51253 -10.81210 -0.21904 1600000 91197 0.004386 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 73 92 -7.512 -7.719 -0.036 -6.133 IL 1 1 2 1 4 1 16 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 15 73 92 -8.855 -0.013 -7.173 -3.015 1.843 -3.820 -2.194 D 4 2 3 5 3 0 12 72 91 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 15 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 59 - U - - MR 6 5 3 8 3 1 14 72 91 -8.855 -0.013 -7.173 -1.696 -1.005 -2.446 1.590 D 7 5 3 8 3 0 11 70 90 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 58 - g - - MR 9 8 3 11 3 1 13 71 90 -8.855 -0.013 -7.173 0.661 -1.967 0.837 -1.407 D 10 8 3 11 3 0 10 69 89 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 57 - U - - MR 12 11 3 14 3 1 12 70 89 -8.855 -0.013 -7.173 0.145 -1.181 -1.513 1.072 D 13 11 3 14 3 0 10 68 88 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 56 - G - - MR 15 14 3 17 3 1 11 69 88 -8.855 -0.013 -7.173 -1.084 -2.924 1.680 -2.374 D 16 14 3 17 3 0 9 67 87 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 11 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 55 - U - - MR 18 17 3 20 3 1 10 68 87 -8.855 -0.013 -7.173 -1.363 -1.506 -1.465 1.535 D 19 17 3 20 3 0 9 67 86 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 10 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 54 - A - - MR 21 20 3 23 2 1 9 67 86 -8.973 -0.003 1.178 -1.349 -0.895 -0.309 D 22 20 3 23 2 0 8 66 85 -4.432 -0.068 IR 23 23 3 23 2 1 10 68 87 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 8 ] - - - - - - B 24 23 3 25 60 0 8 66 85 [ BEGL 9 ] - - - - - - S 25 24 1 26 4 0 0 24 43 -0.036 -7.145 -6.553 -7.193 [ MATP 10 ] 2 12 G C - - MP 26 25 1 30 6 2 2 24 43 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -5.760 -3.594 -6.035 -0.521 -6.642 -5.070 -1.754 -6.294 -4.932 3.810 -5.210 -1.350 -2.119 -5.116 -3.860 -4.898 ML 27 25 1 30 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 1 30 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 1 30 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 3 11 C G - - MP 32 31 6 36 6 2 2 22 41 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -4.686 -4.731 -4.491 -1.178 -3.384 0.074 3.576 -4.180 -4.567 -1.016 -4.854 -2.924 0.045 -4.817 -1.172 -3.485 ML 33 31 6 36 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 4 10 U A - - MP 38 37 6 42 6 2 2 20 39 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -5.599 -5.441 -5.270 -1.667 -3.959 -5.700 0.374 -4.736 -5.266 -1.565 -5.570 -3.305 3.733 -5.676 -1.603 -3.886 ML 39 37 6 42 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 5 9 A U - - MP 44 43 6 48 4 2 2 18 37 -7.512 -7.719 -0.036 -6.133 -4.813 -3.631 -4.699 3.731 -5.629 -6.833 -1.261 -4.671 -4.618 -0.036 -5.212 -0.979 -1.666 -5.806 -3.194 -3.521 ML 45 43 6 48 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 47 43 6 48 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 48 48 5 48 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 49 49 6 49 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 6 - U - - - ML 50 49 6 52 3 1 1 14 33 -8.494 -0.014 -7.148 -2.494 -2.322 -3.263 1.815 D 51 49 6 52 3 0 0 15 33 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 7 - A - - - ML 53 52 3 55 3 1 1 13 31 -8.494 -0.014 -7.148 1.872 -3.433 -2.966 -3.084 D 54 52 3 55 3 0 0 13 32 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 8 - C - - - ML 56 55 3 58 2 1 1 1 1 * 0.000 -3.015 1.843 -3.820 -2.194 D 57 55 3 58 2 0 0 0 0 * 0.000 IL 58 58 3 58 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 17 ] - - - - - - E 59 58 3 -1 0 0 0 0 0 [ BEGR 18 ] - - - - - - S 60 24 1 61 3 0 1 54 74 -8.494 -0.014 -7.148 IL 61 61 2 61 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 13 - c - - - ML 62 61 2 64 3 1 1 54 73 -8.494 -0.195 -3.016 -0.661 0.583 -0.747 0.350 D 63 61 2 64 3 0 0 53 72 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - a - - - ML 65 64 3 67 3 1 1 53 72 -8.315 -0.016 -6.969 0.674 -1.003 -0.342 0.159 D 66 64 3 67 3 0 0 52 71 -7.528 -0.454 -1.920 IL 67 67 3 67 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - C - - - ML 68 67 3 70 5 1 1 52 71 -7.566 -0.028 -7.381 -7.593 -8.485 -1.620 1.520 -1.499 -1.145 D 69 67 3 70 5 0 0 51 70 -4.959 -0.803 -4.221 -2.596 -2.508 IL 70 70 3 70 5 1 1 53 72 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 53 U A - - MP 71 70 3 75 6 2 2 51 70 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -3.945 -3.890 -3.941 -0.345 -3.180 -4.639 1.030 -3.785 -3.948 -0.208 -4.407 -1.949 3.270 -4.180 -0.926 0.361 ML 72 70 3 75 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 3 75 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 3 75 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 52 G C - - MP 77 76 6 81 6 2 2 49 68 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -5.024 -3.268 -5.104 0.049 -6.054 -4.958 -1.196 -5.522 -4.637 3.642 -4.956 0.234 -1.471 -4.685 -3.242 -3.986 ML 78 76 6 81 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 51 A U - - MP 83 82 6 87 6 2 2 47 66 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -4.315 -3.463 -4.261 3.559 -4.816 -5.768 -0.709 -4.355 -4.289 0.277 -4.855 -0.983 -1.028 -4.910 -2.564 -0.306 ML 84 82 6 87 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 50 A U - - MP 89 88 6 93 4 2 2 45 64 -7.512 -7.719 -0.036 -6.133 -4.227 -3.057 -4.318 3.473 -5.469 -6.288 -1.116 -4.423 -4.092 0.641 -4.701 0.844 -1.296 -5.132 -3.005 -3.066 ML 90 88 6 93 4 1 1 46 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 4 1 1 46 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 92 88 6 93 4 0 0 45 64 -4.568 -4.250 -2.265 -0.520 IL 93 93 5 93 4 1 1 47 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 94 94 6 94 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - A - - - ML 95 94 6 97 3 1 1 43 62 -8.494 -0.014 -7.148 1.183 -0.862 -1.430 -0.306 D 96 94 6 97 3 0 0 42 61 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - u - - - ML 98 97 3 100 3 1 1 42 60 -8.494 -0.014 -7.148 -0.040 -0.564 -1.412 0.982 D 99 97 3 100 3 0 0 41 60 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - u - - - ML 101 100 3 103 3 1 1 41 59 -8.855 -0.013 -7.173 0.143 -0.966 -1.239 0.971 D 102 100 3 103 3 0 0 39 58 -5.620 -0.734 -1.403 IL 103 103 3 103 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 49 - U - - MR 104 103 3 106 5 1 1 40 58 -7.566 -0.028 -7.381 -7.593 -8.485 -1.075 -1.358 -0.850 1.368 D 105 103 3 106 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 106 106 3 106 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 48 a u - - MP 107 106 3 111 6 2 2 39 57 -9.349 -9.288 -0.059 -4.990 -8.345 -8.740 -3.835 -2.751 -3.897 2.817 -4.716 -5.123 -0.342 -4.171 -3.837 2.035 -4.355 1.293 -0.565 -4.237 -2.245 -2.742 ML 108 106 3 111 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 3 111 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 3 111 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 47 C G - - MP 113 112 6 117 6 2 2 37 55 -9.309 -9.248 -0.018 -8.024 -8.304 -8.699 -4.494 -4.506 -4.201 -0.688 -2.881 -4.620 3.299 -3.681 -4.228 -0.524 -4.529 -2.513 0.689 -4.549 1.263 -3.060 ML 114 112 6 117 6 1 1 35 54 -6.772 -7.118 -0.775 -1.527 -6.968 -4.498 -0.147 -0.475 -0.762 0.838 MR 115 112 6 117 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 46 C G - - MP 119 118 6 123 6 2 2 35 53 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -4.868 -4.870 -4.494 -1.003 -3.086 -4.856 3.534 -3.919 -4.533 -0.839 -4.788 -2.843 1.062 -4.884 -0.758 -3.342 ML 120 118 6 123 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 45 G C - - MP 125 124 6 129 6 2 2 33 51 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -4.913 -3.269 -4.982 0.008 -5.600 -4.806 -0.944 -5.399 -4.580 3.648 -1.009 -1.009 -1.260 -4.534 -2.954 -3.928 ML 126 124 6 129 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 44 G C - - MP 131 130 6 135 6 2 2 31 49 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -5.187 -3.343 -5.301 -0.078 -6.231 -4.985 -1.348 -5.705 -4.711 3.694 -5.020 -0.108 -1.627 -4.783 -3.408 -4.181 ML 132 130 6 135 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 43 c g - - MP 137 136 6 141 6 2 2 29 47 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -4.307 -4.258 -4.115 -0.403 -2.903 -4.634 2.772 -3.657 -4.114 -0.219 -4.474 -2.182 2.574 -4.414 -0.551 -2.947 ML 138 136 6 141 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 42 u a - - MP 143 142 6 147 6 2 2 27 45 -9.349 -9.288 -0.018 -8.065 -8.345 -8.740 -4.019 -3.975 -3.915 -0.163 -2.833 -4.515 2.470 -3.544 -3.905 0.015 -4.313 -1.920 2.632 -4.172 0.390 -2.763 ML 144 142 6 147 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 30 41 C G - - MP 149 148 6 153 4 2 2 25 43 -7.512 -7.719 -0.036 -6.133 -5.512 -5.550 -5.147 -1.757 -1.184 -5.495 3.754 -4.718 -5.259 -1.617 -5.419 -3.592 -0.365 -5.575 -1.596 -4.099 ML 150 148 6 153 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 152 148 6 153 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 153 153 5 153 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - A - - - ML 155 154 6 157 3 1 1 22 40 -8.494 -0.014 -7.148 1.872 -3.433 -2.966 -3.084 D 156 154 6 157 3 0 0 21 40 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - c - - - ML 158 157 3 160 3 1 1 20 39 -8.494 -0.014 -7.148 0.101 0.694 -0.808 -0.438 D 159 157 3 160 3 0 0 20 39 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - u - - - ML 161 160 3 163 3 1 1 19 38 -8.494 -0.014 -7.148 -0.590 0.227 -1.617 0.879 D 162 160 3 163 3 0 0 19 37 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - u - - - ML 164 163 3 166 3 1 1 18 36 -2.684 -0.256 -7.148 -0.471 -0.227 0.062 0.464 D 165 163 3 166 3 0 0 16 34 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 18 36 -2.039 -0.476 -4.739 0.000 0.000 0.000 0.000 [ MATL 42 ] 36 - C - - - ML 167 166 3 169 3 1 1 16 35 -2.078 -0.403 -7.148 -3.015 1.843 -3.820 -2.194 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 16 34 -2.278 -0.392 -4.978 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - U - - - ML 170 169 3 172 3 1 1 14 33 -8.494 -0.014 -7.148 -1.534 -0.646 -2.292 1.491 D 171 169 3 172 3 0 0 15 33 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - u - - - ML 173 172 3 175 3 1 1 13 31 -8.494 -0.014 -7.148 0.418 -1.136 -1.397 0.871 D 174 172 3 175 3 0 0 13 32 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - C - - - ML 176 175 3 178 2 1 1 1 1 * 0.000 -3.015 1.843 -3.820 -2.194 D 177 175 3 178 2 0 0 0 0 * 0.000 IL 178 178 3 178 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 179 178 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME STnc450 ACC RF02051 DESC Enterobacterial sRNA STnc450 LENG 57 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 20:58:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02051/CM NSEQ 12 EFFN 5.170898 CKSUM 4086404259 STATS LOCAL MSV -7.6450 0.71936 STATS LOCAL VITERBI -8.2519 0.71936 STATS LOCAL FORWARD -3.2868 0.71936 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49529 1.28568 1.51309 1.27609 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 0.00000 * 1 3.98565 0.06684 4.48854 3.35703 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 2 3.26170 4.20543 0.07125 4.16462 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 3 3.65454 0.15558 3.49141 2.43322 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 4 4.26468 2.96557 4.14280 0.08498 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 5 0.10530 4.03965 2.77910 3.89991 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 6 3.56547 3.38171 4.10749 0.08199 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 7 0.05483 4.22696 3.87156 4.02145 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 8 3.98565 0.06684 4.48854 3.35703 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 9 4.09805 3.17283 3.83895 0.08339 9 U - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 10 0.09773 4.32852 2.79323 3.97954 10 A - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 11 2.71363 2.09866 0.25098 3.40974 11 G - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 12 4.23614 0.08982 4.03209 2.92434 12 C - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 13 2.00732 0.90334 1.93080 1.15390 13 c - - - 1.38629 1.38629 1.38629 1.38629 0.16716 4.41915 1.95270 1.46634 0.26236 1.09861 0.40547 14 0.88490 2.18785 1.62802 1.27737 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.02807 4.28006 4.28006 1.46634 0.26236 0.15681 1.93011 15 2.94577 0.23558 2.53969 2.54550 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 16 3.16374 2.16669 2.97511 0.23302 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 17 2.85452 3.79169 0.11178 3.66438 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 18 0.20357 3.71178 2.55681 2.49862 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 19 0.26917 3.88918 1.67201 3.58794 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 20 0.49773 2.05455 2.57294 1.67330 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 21 1.43266 1.82888 2.51221 0.65461 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 22 1.28770 2.18649 2.36319 0.65842 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 23 0.66810 3.29937 0.90524 3.07986 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 24 3.24936 0.41394 3.14289 1.35867 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 25 3.46295 0.25449 3.32595 1.84887 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 26 2.92383 3.72348 0.11044 3.62376 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 27 2.93120 3.87265 0.10277 3.74933 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 28 3.13731 0.78438 2.92366 0.80640 28 c - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 29 2.92720 1.01425 2.70337 0.66010 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 30 4.14032 0.08968 4.01483 2.96004 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 31 0.05483 4.22696 3.87156 4.02145 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 32 1.33592 0.82105 1.99443 1.82622 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 33 1.91097 1.17854 2.70544 0.73920 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 34 1.83362 1.52910 1.29269 1.05296 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.21611 1.70203 4.41915 0.12726 2.12445 1.09861 0.40547 35 3.98565 0.06684 4.48854 3.35703 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.33533 1.29883 4.41915 0.08606 2.49541 1.09861 0.40547 36 2.77453 1.89493 3.30348 0.28697 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 37 1.07211 2.35389 2.53175 0.72733 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 38 3.98565 0.06684 4.48854 3.35703 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 39 2.72775 4.16942 0.10557 3.94466 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 40 0.82293 2.87531 0.82821 2.69368 42 a - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 41 0.87507 3.09433 0.72772 2.90317 43 g - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 42 3.95032 0.16074 3.73119 2.25121 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 43 3.85751 0.16936 2.75258 2.64630 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 44 2.03445 3.53326 0.21880 3.30900 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.08956 4.41915 2.60875 1.46634 0.26236 1.09861 0.40547 45 2.43672 3.36499 0.18027 3.14786 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02601 4.35559 4.35559 1.46634 0.26236 0.28306 1.40030 46 3.31318 1.42348 3.09620 0.38934 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 47 2.41482 2.57729 2.01854 0.35412 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 48 3.76259 2.59348 3.65842 0.13211 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 49 3.75660 2.90257 3.50885 0.11449 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 50 3.83234 0.19505 3.61277 2.05130 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 51 0.40743 3.15916 2.00014 1.85237 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 52 0.50825 2.49111 2.08472 1.65397 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 53 2.64691 2.69944 2.51853 0.24678 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 54 2.27775 3.74512 0.17461 3.37942 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 55 1.28921 2.40505 2.63854 0.57486 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 56 0.89144 3.06541 0.74174 2.70286 58 g - - : 1.38629 1.38629 1.38629 1.38629 0.02438 4.41915 4.41915 1.46634 0.26236 1.09861 0.40547 57 2.89566 2.19234 3.41659 0.22282 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.01227 4.40703 * 1.46634 0.26236 0.00000 * //