INFERNAL1/a [1.1.5 | Sep 2023] NAME SECIS_3 ACC RF01989 DESC Selenocysteine insertion sequence 3 STATES 181 NODES 45 CLEN 59 W 74 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 03:39:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01989/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 24 EFFN 2.885742 CKSUM 1523359664 NULL 0.000 0.000 0.000 0.000 GA 63.00 TC 63.00 NC 62.90 EFP7GF -10.8473 0.71920 ECMLC 0.67512 -5.93625 3.03301 1600000 511673 0.002345 ECMGC 0.39752 -19.03918 -4.21274 1600000 145108 0.002757 ECMLI 0.67429 -3.98821 4.23592 1600000 307291 0.003905 ECMGI 0.42819 -14.32590 -1.51194 1600000 96599 0.004141 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 94 -7.295 -7.502 -0.042 -5.916 IL 1 1 2 1 4 1 16 78 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 15 74 94 -8.289 -0.016 -6.943 -0.111 -2.080 1.314 -1.512 D 4 2 3 5 3 0 10 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 15 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 14 73 93 -8.289 -0.016 -6.943 -0.606 -0.742 -1.638 1.277 D 7 5 3 8 3 0 9 72 91 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 14 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 13 72 92 -8.289 -0.016 -6.943 -1.184 1.123 -2.034 0.186 D 10 8 3 11 3 0 8 71 90 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 13 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 13 71 90 -8.289 -0.016 -6.943 -2.102 -1.994 -2.861 1.756 D 13 11 3 14 3 0 7 70 89 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 12 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 12 70 89 -8.289 -0.016 -6.943 -2.255 -3.567 1.839 -2.951 D 16 14 3 17 3 0 6 69 88 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 11 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 11 69 88 -8.660 -0.015 -6.978 1.828 -3.029 -2.597 -2.639 D 19 17 3 20 3 0 5 68 87 -5.620 -0.734 -1.403 IL 20 20 3 20 3 1 10 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 59 - C - - MR 21 20 3 23 3 1 10 68 87 -8.660 -0.015 -6.978 -2.536 1.783 -3.364 -1.795 D 22 20 3 23 3 0 3 66 86 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 9 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 58 - A - - MR 24 23 3 26 3 1 9 67 86 -8.660 -0.015 -6.978 1.828 -3.029 -2.597 -2.639 D 25 23 3 26 3 0 3 65 85 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 8 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 57 - G - - MR 27 26 3 29 3 1 8 66 85 -8.660 -0.015 -6.978 -2.255 -3.567 1.839 -2.951 D 28 26 3 29 3 0 2 64 84 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 7 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 56 - U - - MR 30 29 3 32 3 1 8 65 84 -8.660 -0.015 -6.978 -2.102 -1.994 -2.861 1.756 D 31 29 3 32 3 0 1 63 83 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 6 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 55 - A - - MR 33 32 3 35 3 1 7 64 83 -8.660 -0.015 -6.978 1.828 -3.029 -2.597 -2.639 D 34 32 3 35 3 0 1 62 82 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 5 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 54 - g - - MR 36 35 3 38 3 1 6 63 82 -8.660 -0.015 -6.978 -0.030 -0.224 0.536 -0.486 D 37 35 3 38 3 0 0 61 81 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 4 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 53 - C - - MR 39 38 3 41 3 1 6 62 81 -8.660 -0.015 -6.978 -2.536 1.783 -3.364 -1.795 D 40 38 3 41 3 0 0 60 80 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 4 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 52 - G - - MR 42 41 3 44 3 1 5 61 80 -8.660 -0.015 -6.978 -1.538 -2.572 1.659 -1.597 D 43 41 3 44 3 0 0 59 79 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 3 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 51 - u - - MR 45 44 3 47 3 1 4 60 79 -8.660 -0.015 -6.978 -0.188 -0.063 -1.325 0.820 D 46 44 3 47 3 0 0 58 78 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 3 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 50 - G - - MR 48 47 3 50 5 1 4 59 78 -7.380 -0.032 -7.196 -7.408 -8.300 -2.255 -3.567 1.839 -2.951 D 49 47 3 50 5 0 0 58 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 2 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 7 49 C G - - MP 51 50 3 55 6 2 5 58 77 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -5.270 -5.237 -4.833 -1.419 -3.412 -5.149 3.724 -4.294 -4.916 -1.261 -5.089 -3.203 0.017 -5.289 -1.145 -3.734 ML 52 50 3 55 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 8 48 a u - - MP 57 56 6 61 6 2 5 56 75 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -3.487 1.975 -3.628 2.645 -4.215 -4.944 -0.178 -3.813 -3.472 1.197 -4.029 -0.132 -0.405 -4.078 -1.980 -2.493 ML 58 56 6 61 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 9 47 C G - - MP 63 62 6 67 6 2 5 54 73 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -4.811 -4.816 -4.449 -0.988 -3.071 -4.812 3.584 -3.912 -4.502 -0.808 -4.745 -2.819 0.441 -4.837 -0.181 -3.323 ML 64 62 6 67 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 10 46 G C - - MP 69 68 6 73 6 2 4 52 71 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -3.631 -1.322 -3.610 0.884 -4.192 -4.109 0.153 -4.131 -3.767 3.258 -4.120 -0.345 -0.102 -1.209 -1.733 -2.646 ML 70 68 6 73 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 11 45 g c - - MP 75 74 6 79 6 2 4 50 69 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -3.051 -2.412 -3.079 1.080 -1.875 -3.812 1.095 -3.416 -3.247 2.613 -3.683 1.079 0.673 -3.102 -0.913 -2.115 ML 76 74 6 79 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 12 44 c g - - MP 81 80 6 85 6 2 3 48 67 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -2.934 -3.017 0.695 0.338 -2.427 -3.729 2.701 -2.993 -3.039 0.449 -3.529 -1.319 1.086 -3.189 0.611 -2.071 ML 82 80 6 85 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 13 43 C G - - MP 87 86 6 91 4 2 2 46 65 -7.295 -7.502 -0.042 -5.916 -5.270 -5.237 -4.833 -1.419 -3.412 -5.149 3.724 -4.294 -4.916 -1.261 -5.089 -3.203 0.017 -5.289 -1.145 -3.734 ML 88 86 6 91 4 1 1 47 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 46 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 45 65 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 48 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 14 - C - - - ML 93 92 6 95 5 1 1 44 63 -7.380 -0.032 -7.196 -7.408 -8.300 -2.536 1.783 -3.364 -1.795 D 94 92 6 95 5 0 0 42 61 -4.959 -0.803 -4.221 -2.596 -2.508 IL 95 95 3 95 5 1 1 44 63 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 15 42 a u - - MP 96 95 3 100 6 2 2 43 62 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -1.566 -0.920 -1.905 1.363 -1.905 -1.227 1.336 -1.371 -1.337 1.197 -2.111 0.777 1.140 -1.458 -0.116 -0.827 ML 97 95 3 100 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 16 41 A U - - MP 102 101 6 106 4 2 2 41 60 -7.295 -7.502 -0.042 -5.916 -1.165 -3.065 -3.713 3.420 -4.067 -4.933 -0.146 -3.893 -3.759 0.723 -4.311 -0.744 -0.417 -4.134 -1.928 -2.732 ML 103 101 6 106 4 1 1 41 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 41 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 40 59 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 43 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 17 - C - - - ML 108 107 6 110 3 1 1 38 57 -8.660 -0.015 -6.978 -2.536 1.783 -3.364 -1.795 D 109 107 6 110 3 0 0 37 56 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 40 - U - - MR 111 110 3 113 3 1 1 37 56 -8.660 -0.015 -6.978 -1.606 -1.246 -2.350 1.611 D 112 110 3 113 3 0 0 35 54 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 39 - a - - MR 114 113 3 116 3 1 1 36 55 -8.660 -0.015 -6.978 0.832 -1.234 0.049 -0.395 D 115 113 3 116 3 0 0 34 53 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 38 - C - - MR 117 116 3 119 3 1 1 35 54 -8.660 -0.015 -6.978 -1.656 1.579 -2.032 -1.148 D 118 116 3 119 3 0 0 33 52 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 37 - A - - MR 120 119 3 122 3 1 1 34 53 -8.660 -0.015 -6.978 1.596 -1.958 -1.872 -1.164 D 121 119 3 122 3 0 0 32 51 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 36 - a - - MR 123 122 3 125 5 1 1 33 52 -7.380 -0.032 -7.196 -7.408 -8.300 0.649 -0.762 0.004 -0.252 D 124 122 3 125 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 18 35 G C - - MP 126 125 3 130 6 2 2 32 51 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -5.374 -3.402 -5.562 -0.239 -6.116 -4.931 -1.323 -5.829 -4.716 3.759 -5.013 -1.132 -1.694 -4.875 -3.399 -4.429 ML 127 125 3 130 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 19 34 G C - - MP 132 131 6 136 4 2 2 30 49 -7.295 -7.502 -0.042 -5.916 -4.552 -3.075 -4.598 0.252 -5.127 -4.618 -0.567 -5.004 -4.334 3.589 -1.589 -0.815 -0.883 -4.263 -2.553 -3.557 ML 133 131 6 136 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 20 - U - - - ML 138 137 6 140 5 1 1 27 46 -7.380 -0.032 -7.196 -7.408 -8.300 -2.102 -1.994 -2.861 1.756 D 139 137 6 140 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 140 140 3 140 5 1 1 28 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 21 33 g c - - MP 141 140 3 145 6 2 2 26 45 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -3.402 -2.461 -3.359 1.616 -3.743 -4.057 0.865 -3.776 -3.590 2.804 -3.972 0.181 0.636 -3.332 -1.252 -2.341 ML 142 140 3 145 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 22 32 G C - - MP 147 146 6 151 6 2 2 24 43 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -3.874 -2.801 -3.801 0.754 -3.938 -4.330 0.579 -4.089 -3.924 3.203 -4.272 -0.508 0.154 -3.745 -0.004 -2.744 ML 148 146 6 151 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 23 31 C G - - MP 153 152 6 157 6 2 2 22 41 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -5.270 -5.237 -4.833 -1.419 -3.412 -5.149 3.724 -4.294 -4.916 -1.261 -5.089 -3.203 0.017 -5.289 -1.145 -3.734 ML 154 152 6 157 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 24 30 c g - - MP 159 158 6 163 6 2 2 20 39 -9.250 -9.189 -0.019 -7.966 -8.245 -8.640 -3.261 -2.890 -3.312 2.169 -2.889 -4.135 2.206 -3.315 -3.326 1.358 -3.818 -0.734 0.967 -3.487 -0.584 -2.246 ML 160 158 6 163 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 25 29 A U - - MP 165 164 6 169 4 2 2 18 37 -7.295 -7.502 -0.042 -5.916 -3.753 -2.679 -3.871 3.039 -4.717 -5.444 -0.437 -4.032 -3.679 1.166 -4.258 1.681 -0.650 -4.447 -2.319 -2.656 ML 166 164 6 169 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 26 - G - - - ML 171 170 6 173 3 1 1 15 33 -8.289 -0.016 -6.943 -2.255 -3.567 1.839 -2.951 D 172 170 6 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 27 - U - - - ML 174 173 3 176 3 1 1 13 31 -8.289 -0.016 -6.943 -2.102 -1.994 -2.861 1.756 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 28 - C - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -1.526 1.423 -2.386 -0.358 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SECIS_3 ACC RF01989 DESC Selenocysteine insertion sequence 3 LENG 59 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 03:39:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01989/CM NSEQ 24 EFFN 4.110352 CKSUM 1523359664 STATS LOCAL MSV -7.2540 0.71920 STATS LOCAL VITERBI -8.4331 0.71920 STATS LOCAL FORWARD -3.4385 0.71920 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.66548 1.23374 1.20372 1.51584 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 0.00000 * 1 1.51328 3.10312 0.40078 2.73178 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 2 1.92751 1.99697 2.73230 0.42515 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 3 2.46886 0.51987 3.09011 1.29018 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 4 3.27629 3.13290 3.81299 0.10919 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 5 3.37558 4.32954 0.07031 3.88632 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 6 0.07438 3.93152 3.59508 3.70478 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 7 3.94489 0.11452 3.79697 2.71191 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 8 0.26349 3.31471 1.90068 3.08297 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 9 3.54729 0.20568 3.37007 2.09789 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 10 2.01039 2.79931 0.34804 2.31125 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 11 1.90744 1.95039 0.54287 2.05383 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 12 1.58336 0.73014 2.45080 1.48434 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 13 3.92901 0.11532 3.78805 2.70883 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 14 3.66512 0.09096 4.20687 3.06936 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 15 1.45275 1.51027 1.17340 1.44430 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 16 0.20397 3.28579 2.27305 3.12125 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 17 3.66512 0.09096 4.20686 3.06936 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 18 3.04831 3.91932 0.09242 3.86403 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 19 2.72794 3.45944 0.14090 3.36314 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 20 3.27629 3.13290 3.81299 0.10919 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 21 1.51168 2.19517 0.61420 2.06319 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 22 2.26035 2.54266 0.37742 2.02951 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 23 3.94034 0.11474 3.79442 2.71103 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 24 1.07804 1.13556 1.71692 1.83963 24 a - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 25 0.51789 3.43460 1.10777 3.17752 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 26 3.37558 4.32954 0.07031 3.88632 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 27 3.27629 3.13290 3.81299 0.10919 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 28 2.77117 0.31578 3.39043 1.74583 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 29 3.37208 2.22556 3.21555 0.20145 29 U - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 30 2.07399 1.87762 1.04756 0.99271 30 u - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 31 2.99008 3.95264 0.09875 3.70716 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 32 2.76374 0.42253 1.93666 1.98505 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 33 2.27473 0.73393 2.03011 1.25233 33 c - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 34 3.58233 0.19331 2.80735 2.43495 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 35 4.05570 0.11052 3.78739 2.73868 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 36 0.90940 1.95536 1.35688 1.61818 36 a - - - 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 37 0.21685 3.00052 2.96555 2.36813 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 38 2.96115 0.19705 3.03241 2.53969 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 39 0.76643 2.37962 1.32211 1.73628 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 40 2.82185 2.42282 3.34034 0.20284 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 41 2.72406 2.56981 3.08295 0.20823 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 42 1.67481 1.47013 1.46168 1.04721 42 u - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 43 2.98894 3.95076 0.09891 3.70508 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 44 2.05992 2.61634 0.34364 2.40483 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 45 2.17348 0.82635 1.88339 1.21571 45 c - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 46 2.90294 0.32604 2.61257 1.89703 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 47 2.58189 3.52815 0.15255 3.31067 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 48 3.29244 0.88469 3.10338 0.68301 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 49 3.00415 3.97606 0.09680 3.73295 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 50 3.37558 4.32954 0.07031 3.88632 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 51 1.55965 1.40764 2.43537 0.78197 51 u - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 52 2.77384 3.51140 0.17471 2.68790 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 53 3.66512 0.09096 4.20686 3.06936 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 54 1.46692 1.51693 0.92759 1.86772 54 g - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 55 0.07438 3.93152 3.59508 3.70478 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 56 3.27629 3.13290 3.81299 0.10919 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 57 3.37558 4.32954 0.07031 3.88632 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 58 0.07438 3.93152 3.59508 3.70478 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.02976 4.22246 4.22246 1.46634 0.26236 1.09861 0.40547 59 3.66512 0.09096 4.20687 3.06936 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.20769 * 1.46634 0.26236 0.00000 * //