INFERNAL1/a [1.1.5 | Sep 2023] NAME H19_2 ACC RF01973 DESC H19 conserved region 2 STATES 211 NODES 71 CLEN 69 W 151 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 21:01:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01973/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 23 EFFN 2.928345 CKSUM 2393426131 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 57.20 NC 36.80 EFP7GF -8.1575 0.71874 ECMLC 0.72522 -9.31462 -0.82019 1600000 568290 0.002112 ECMGC 0.37431 -20.57185 -6.16629 1600000 87868 0.004552 ECMLI 0.65957 -7.80511 0.63210 1600000 313337 0.003830 ECMGI 0.45883 -10.87836 0.06581 1600000 60659 0.006594 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 151 235 -7.308 -7.515 -0.041 -5.929 IL 1 1 2 1 4 2 27 153 237 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 27 153 237 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 2 26 151 236 -5.680 -0.057 -5.680 -0.459 1.114 -1.289 -0.517 D 4 2 3 5 3 0 23 149 232 -11.551 -1.585 -0.585 IL 5 5 3 5 3 3 28 158 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 2 25 150 234 -5.680 -0.057 -5.680 0.985 -0.957 -0.631 -0.217 D 7 5 3 8 3 0 22 147 231 -11.551 -1.585 -0.585 IL 8 8 3 8 3 2 27 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 24 149 233 -5.680 -0.171 -3.442 -0.601 -1.119 1.279 -1.143 D 10 8 3 11 3 0 22 146 230 -11.551 -1.585 -0.585 IL 11 11 3 11 3 2 26 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 24 148 231 -5.572 -0.109 -4.273 -1.916 1.631 -2.114 -1.296 D 13 11 3 14 3 0 21 146 229 -12.714 -0.510 -1.749 IL 14 14 3 14 3 2 25 154 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 23 146 230 -5.639 -0.059 -5.639 -0.308 -0.656 -1.004 1.042 D 16 14 3 17 3 0 20 143 227 -12.123 -2.157 -0.367 IL 17 17 3 17 3 2 25 153 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 22 145 228 -5.639 -0.059 -5.639 -2.055 1.667 -2.261 -1.413 D 19 17 3 20 3 0 19 143 226 -12.123 -0.859 -1.157 IL 20 20 3 20 3 1 24 151 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 21 144 227 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 22 20 3 23 3 0 18 141 224 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 23 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 20 142 226 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 25 23 3 26 3 0 17 140 223 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 22 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 19 141 224 -1.808 -0.848 -2.653 -1.810 1.527 -2.028 -0.765 D 28 26 3 29 3 0 17 139 222 -11.551 -1.585 -0.585 IL 29 29 3 29 3 2 20 141 224 -6.119 -0.021 -13.763 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - u - - - ML 30 29 3 32 3 1 19 140 223 -5.464 -0.067 -5.464 -0.651 -0.502 -0.213 0.843 D 31 29 3 32 3 0 16 138 221 -13.309 -0.317 -2.344 IL 32 32 3 32 3 1 20 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - u - - - ML 33 32 3 35 3 1 18 139 221 -5.680 -0.057 -5.680 -0.932 0.024 -0.860 0.932 D 34 32 3 35 3 0 14 136 218 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 19 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - G - - - ML 36 35 3 38 3 1 17 137 220 -5.680 -0.057 -5.680 -0.465 -1.917 1.420 -1.576 D 37 35 3 38 3 0 14 134 217 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 18 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - U - - - ML 39 38 3 41 3 1 16 136 219 -5.680 -0.057 -5.680 -1.032 -1.237 -1.589 1.462 D 40 38 3 41 3 0 13 133 215 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 18 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - C - - - ML 42 41 3 44 3 1 15 135 217 -5.680 -0.121 -4.041 -2.142 1.687 -2.353 -1.487 D 43 41 3 44 3 0 13 132 214 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 17 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - C - - - ML 45 44 3 47 3 1 14 133 216 -5.620 -0.405 -2.155 -1.689 1.484 -1.898 -0.680 D 46 44 3 47 3 0 12 131 213 -12.321 -2.355 -0.314 IL 47 47 3 47 3 1 17 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - g - - - ML 48 47 3 50 3 1 14 132 214 -5.290 -0.076 -5.290 0.166 -1.104 0.864 -0.753 D 49 47 3 50 3 0 12 131 212 -13.888 -0.204 -2.922 IL 50 50 3 50 3 1 16 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - A - - - ML 51 50 3 53 3 1 13 131 213 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 52 50 3 53 3 0 9 128 209 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 15 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - C - - - ML 54 53 3 56 3 1 13 130 211 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 55 53 3 56 3 0 8 126 208 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 14 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - C - - - ML 57 56 3 59 3 1 12 128 210 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 58 56 3 59 3 0 7 125 206 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 14 135 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 60 59 3 62 3 1 11 127 208 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 61 59 3 62 3 0 7 124 205 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 13 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - G - - - ML 63 62 3 65 3 1 11 126 207 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 64 62 3 65 3 0 6 122 203 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 12 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - C - - - ML 66 65 3 68 3 1 10 124 205 -5.680 -0.057 -5.680 -1.687 1.440 -1.897 -0.499 D 67 65 3 68 3 0 5 121 202 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 12 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - C - - - ML 69 68 3 71 3 1 9 123 204 -5.680 -0.057 -5.680 -1.368 1.080 -1.557 0.212 D 70 68 3 71 3 0 5 120 200 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 11 130 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - - - ML 72 71 3 74 3 1 9 121 202 -5.680 -0.057 -5.680 -1.113 -2.280 1.621 -1.967 D 73 71 3 74 3 0 4 118 199 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 10 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - C - - - ML 75 74 3 77 3 1 8 120 201 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 76 74 3 77 3 0 3 117 197 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 10 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 78 77 3 80 3 1 7 119 199 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 79 77 3 80 3 0 3 115 196 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 9 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - A - - - ML 81 80 3 83 3 1 7 117 198 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 82 80 3 83 3 0 2 114 194 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 8 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 84 83 3 86 3 1 6 116 196 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 85 83 3 86 3 0 2 113 193 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 8 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - G - - - ML 87 86 3 89 3 1 6 115 195 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 88 86 3 89 3 0 1 111 191 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 7 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - U - - - ML 90 89 3 92 3 1 5 113 193 -5.680 -0.057 -5.680 -0.100 -0.993 -1.109 1.071 D 91 89 3 92 3 0 1 110 189 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 6 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - C - - - ML 93 92 3 95 3 1 4 112 191 -5.680 -0.057 -5.680 -1.687 1.440 -1.897 -0.499 D 94 92 3 95 3 0 0 109 188 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 6 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - C - - - ML 96 95 3 98 3 1 3 110 190 -5.680 -0.101 -4.382 -2.142 1.687 -2.353 -1.487 D 97 95 3 98 3 0 0 107 187 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 5 117 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - U - - - ML 99 98 3 101 3 1 3 109 188 -5.639 -0.059 -5.639 -1.796 -1.447 -1.962 1.627 D 100 98 3 101 3 0 0 106 185 -12.123 -0.859 -1.157 IL 101 101 3 101 3 1 5 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - G - - - ML 102 101 3 104 3 1 3 108 187 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 103 101 3 104 3 0 0 104 183 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 4 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - u - - - ML 105 104 3 107 3 1 2 106 185 -5.680 -0.057 -5.680 0.363 -0.934 -0.979 0.751 D 106 104 3 107 3 0 0 103 182 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 4 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - A - - - ML 108 107 3 110 3 1 2 105 183 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 109 107 3 110 3 0 0 102 180 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 3 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - A - - - ML 111 110 3 113 3 1 2 103 182 -3.869 -0.133 -5.680 1.760 -2.460 -2.197 -2.223 D 112 110 3 113 3 0 0 100 179 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 3 103 182 -3.792 -0.109 -11.436 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - C - - - ML 114 113 3 116 3 1 1 102 181 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 115 113 3 116 3 0 0 99 177 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - - - ML 117 116 3 119 3 1 1 101 179 -5.680 -0.057 -5.680 -1.226 1.523 -1.928 -1.202 D 118 116 3 119 3 0 0 98 175 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 2 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - A - - - ML 120 119 3 122 3 1 1 99 178 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 121 119 3 122 3 0 0 96 174 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - - - ML 123 122 3 125 3 1 1 98 176 -5.680 -0.057 -5.680 1.469 -1.742 -0.830 -1.430 D 124 122 3 125 3 0 0 95 172 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - A - - - ML 126 125 3 128 3 1 1 97 174 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 127 125 3 128 3 0 0 93 170 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - A - - - ML 129 128 3 131 3 1 1 95 173 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 130 128 3 131 3 0 0 92 169 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - g - - - ML 132 131 3 134 3 1 1 94 171 -5.680 -0.057 -5.680 -0.303 -0.711 0.582 0.114 D 133 131 3 134 3 0 0 90 167 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - U - - - ML 135 134 3 137 3 1 1 92 169 -5.680 -0.057 -5.680 -0.825 -1.176 -1.472 1.396 D 136 134 3 137 3 0 0 89 165 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - G - - - ML 138 137 3 140 3 1 1 91 167 -5.680 -0.057 -5.680 -0.529 -1.953 1.445 -1.614 D 139 137 3 140 3 0 0 87 164 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - A - - - ML 141 140 3 143 3 1 1 89 166 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 142 140 3 143 3 0 0 86 162 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - C - - - ML 144 143 3 146 3 1 1 88 164 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 145 143 3 146 3 0 0 84 160 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - C - - - ML 147 146 3 149 3 1 1 86 162 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 148 146 3 149 3 0 0 83 158 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - G - - - ML 150 149 3 152 3 1 1 85 160 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 151 149 3 152 3 0 0 81 156 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - G - - - ML 153 152 3 155 3 1 1 83 159 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 154 152 3 155 3 0 0 79 155 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - G - - - ML 156 155 3 158 3 1 1 81 157 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 157 155 3 158 3 0 0 78 153 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - A - - - ML 159 158 3 161 3 1 1 80 155 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 160 158 3 161 3 0 0 76 151 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - U - - - ML 162 161 3 164 3 1 1 78 153 -5.680 -0.057 -5.680 -1.879 -1.515 -2.048 1.649 D 163 161 3 164 3 0 0 74 149 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - G - - - ML 165 164 3 167 3 1 1 77 151 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 166 164 3 167 3 0 0 73 147 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - A - - - ML 168 167 3 170 3 1 1 75 149 -5.680 -0.057 -5.680 1.760 -2.460 -2.197 -2.223 D 169 167 3 170 3 0 0 71 145 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - A - - - ML 171 170 3 173 3 1 1 73 147 -5.680 -0.057 -5.680 1.543 -1.869 -1.074 -1.571 D 172 170 3 173 3 0 0 69 143 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - U - - - ML 174 173 3 176 3 1 1 72 145 -5.680 -0.057 -5.680 -1.879 -1.515 -2.048 1.649 D 175 173 3 176 3 0 0 68 141 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - G - - - ML 177 176 3 179 3 1 1 70 143 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 178 176 3 179 3 0 0 66 138 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - c - - - ML 180 179 3 182 3 1 1 68 141 -5.680 -0.057 -5.680 -1.229 0.697 -1.410 0.657 D 181 179 3 182 3 0 0 64 136 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - C - - - ML 183 182 3 185 3 1 1 66 139 -5.680 -0.057 -5.680 -2.142 1.687 -2.353 -1.487 D 184 182 3 185 3 0 0 62 134 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - U - - - ML 186 185 3 188 3 1 1 64 136 -5.680 -0.057 -5.680 -1.879 -1.515 -2.048 1.649 D 187 185 3 188 3 0 0 60 131 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 65 - G - - - ML 189 188 3 191 3 1 1 62 134 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 190 188 3 191 3 0 0 58 129 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - G - - - ML 192 191 3 194 3 1 1 60 131 -5.680 -0.057 -5.680 -1.900 -2.718 1.764 -2.438 D 193 191 3 194 3 0 0 55 126 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - C - - - ML 195 194 3 197 3 1 1 58 129 -5.680 -0.057 -5.680 -1.819 1.532 -2.037 -0.784 D 196 194 3 197 3 0 0 52 123 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - U - - - ML 198 197 3 200 3 1 1 55 126 -5.680 -0.057 -5.680 -0.936 -0.709 -1.355 1.307 D 199 197 3 200 3 0 0 49 119 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - C - - - ML 201 200 3 203 3 1 1 52 122 -5.680 -0.057 -5.680 -1.288 1.272 -0.928 -0.620 D 202 200 3 203 3 0 0 44 114 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 70 - C - - - ML 204 203 3 206 3 1 1 48 117 -5.680 -0.057 -5.680 -0.988 1.460 -1.801 -1.125 D 205 203 3 206 3 0 0 32 101 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 71 - C - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -1.817 1.531 -2.035 -0.780 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME H19_2 ACC RF01973 DESC H19 conserved region 2 LENG 69 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 16 21:01:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01973/CM NSEQ 23 EFFN 2.928345 CKSUM 2393426131 STATS LOCAL MSV -8.6311 0.71874 STATS LOCAL VITERBI -8.9055 0.71874 STATS LOCAL FORWARD -3.6247 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41033 1.12130 1.45606 1.62492 1.38629 1.38629 1.38629 1.38629 0.02348 5.06568 4.08051 0.39730 1.11515 0.00000 * 1 1.70464 0.61406 2.27983 1.74463 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 2 0.70378 2.04943 1.82388 1.53674 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 3 1.80272 2.16169 0.49949 2.17876 - G - - : 1.38629 1.38629 1.38629 1.38629 0.11826 3.93737 2.38559 1.46634 0.26236 1.09861 0.40547 4 2.71431 0.25599 2.85129 2.28445 - C - - : 1.38629 1.38629 1.38629 1.38629 0.07553 3.86207 2.96179 1.46634 0.26236 0.35329 1.21192 5 1.59952 1.84072 2.08251 0.66420 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04097 3.90848 3.90848 1.46634 0.26236 1.49521 0.25386 6 2.81070 0.23089 2.95351 2.36600 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04097 3.90848 3.90848 1.46634 0.26236 0.59494 0.80206 7 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 8 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 9 2.64104 0.32811 2.79213 1.91638 - C - - : 1.38629 1.38629 1.38629 1.38629 0.58785 1.25338 1.83921 0.01449 4.24157 1.09861 0.40547 10 1.83771 1.73397 1.53376 0.80182 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04638 3.78719 3.78719 1.46634 0.26236 0.21943 1.62444 11 2.03247 1.36997 1.98208 0.74005 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 12 1.70888 2.71489 0.40217 2.47868 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 13 2.10147 2.24402 2.48801 0.37307 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 14 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.08365 3.93737 2.80107 1.46634 0.26236 1.09861 0.40547 15 2.55697 0.35757 2.70205 1.85780 - C - - : 1.38629 1.38629 1.38629 1.38629 0.28085 3.89525 1.49378 1.46634 0.26236 1.63222 0.21753 16 1.27116 2.15180 0.78773 1.90822 - g - - : 1.38629 1.38629 1.38629 1.38629 0.05247 3.66686 3.66686 1.46634 0.26236 0.14153 2.02516 17 0.16663 3.09157 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 18 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 19 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 20 0.16663 3.09157 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 21 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 22 2.55551 0.38818 2.70153 1.73185 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 23 2.33425 0.63765 2.46538 1.23923 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 24 2.15799 2.96686 0.26261 2.74989 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 25 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 26 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 27 0.16663 3.09157 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 28 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 29 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 30 1.45569 2.07447 2.15479 0.64396 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 31 2.55551 0.38818 2.70153 1.73185 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 32 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.06986 3.93737 3.03710 1.46634 0.26236 1.09861 0.40547 33 2.63139 2.38924 2.74620 0.25857 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04097 3.90848 3.90848 1.46634 0.26236 0.59494 0.80206 34 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 35 1.13487 2.03352 2.06467 0.86559 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 36 0.16663 3.09157 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 37 0.16663 3.09157 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.09205 2.68176 3.93737 0.07494 2.62828 1.09861 0.40547 38 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 39 2.23579 0.33030 2.72289 2.21919 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 40 0.16663 3.09157 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 41 0.36828 2.59379 1.96189 2.37784 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 42 0.16663 3.09157 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 43 0.16663 3.09157 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 44 1.59663 1.87928 0.98322 1.30706 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 45 1.95781 2.20164 2.40672 0.41840 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 46 1.75279 2.73997 0.38495 2.50528 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 47 0.16663 3.09158 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 48 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 49 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 50 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 51 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 52 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 53 0.16663 3.09158 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 54 2.68871 2.43658 2.80591 0.24319 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 55 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 56 0.16663 3.09157 2.90932 2.92717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 57 0.31647 2.68209 2.13105 2.47517 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 58 2.68871 2.43658 2.80591 0.24319 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 59 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 60 2.23835 0.90346 2.36334 0.93116 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 61 2.87094 0.21663 3.01718 2.41705 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 62 2.68871 2.43658 2.80591 0.24319 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 63 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 64 2.70325 3.27053 0.16383 3.07602 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 65 2.64716 0.32426 2.79855 1.92971 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 66 2.03486 1.87756 2.32540 0.48030 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 67 2.27883 0.50489 2.02982 1.81606 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 68 2.07080 0.37462 2.63499 2.16590 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03978 3.93737 3.93737 1.46634 0.26236 1.09861 0.40547 69 2.64579 0.32512 2.79712 1.92672 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //