INFERNAL1/a [1.1.5 | Sep 2023] NAME c-di-GMP-II ACC RF01786 DESC Cyclic di-GMP-II riboswitch aptamer STATES 256 NODES 64 CLEN 84 W 111 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 20:50:44 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /homes/nancyontiveros/3D_families/3D_release15/RF01786/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 54 EFFN 4.848267 CKSUM 1526816564 NULL 0.000 0.000 0.000 0.000 GA 53.50 TC 53.50 NC 53.30 EFP7GF -15.9025 0.71857 ECMLC 0.66166 -4.63863 3.15885 1600000 208841 0.005746 ECMGC 0.43636 -16.97925 -4.79936 1600000 81331 0.004918 ECMLI 0.65223 -2.99998 4.50386 1600000 160221 0.007490 ECMGI 0.45925 -12.43942 -1.71281 1600000 55141 0.007254 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 111 144 -9.504 -9.443 -0.025 -8.220 -8.500 -6.911 IL 1 1 2 1 6 1 29 113 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 30 112 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 113 u a - - MP 3 2 3 7 6 2 35 111 144 -9.495 -9.434 -0.016 -8.211 -8.491 -8.886 -0.077 -0.798 -0.339 1.188 -0.926 -2.000 1.322 -2.185 -1.376 0.998 -2.474 -0.405 1.325 -1.681 0.223 -0.716 ML 4 2 3 7 6 1 27 109 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 26 109 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 20 106 139 -9.236 -7.934 -3.731 -4.413 -4.431 -0.276 IL 7 7 5 7 6 1 29 111 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 29 110 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 112 a u - - MP 9 8 6 13 6 2 34 109 142 -9.495 -9.434 -0.016 -8.211 -8.491 -8.886 -1.006 -1.572 -0.769 1.543 -0.928 -2.004 1.283 -1.613 -1.663 0.900 -1.767 -0.347 1.480 -1.595 0.314 -0.988 ML 10 8 6 13 6 1 26 107 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 26 107 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 20 104 137 -9.236 -7.934 -3.731 -4.413 -4.431 -0.276 IL 13 13 5 13 6 1 28 109 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 29 108 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 111 u a - - MP 15 14 6 19 6 2 33 107 140 -9.495 -9.434 -0.016 -8.211 -8.491 -8.886 0.101 -1.848 -1.480 1.253 -1.306 -2.109 1.330 -1.711 -1.258 1.015 -1.645 -0.120 1.353 -1.560 0.061 -0.259 ML 16 14 6 19 6 1 26 105 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 25 105 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 19 102 135 -9.236 -7.934 -3.731 -4.413 -4.431 -0.276 IL 19 19 5 19 6 1 28 107 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 28 106 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 110 c g - - MP 21 20 6 25 6 2 32 105 138 -9.495 -9.434 -0.016 -8.211 -8.491 -8.886 -0.140 -1.315 -1.835 1.317 -1.240 -1.883 1.382 -1.846 -1.201 0.917 -1.654 -0.532 1.249 -1.974 0.438 0.027 ML 22 20 6 25 6 1 25 103 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 25 103 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 19 100 133 -9.236 -7.934 -3.731 -4.413 -2.574 -0.506 IL 25 25 5 25 6 1 27 105 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 27 104 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 109 c g - - MP 27 26 6 31 6 2 31 103 136 -9.495 -9.434 -0.031 -6.229 -8.491 -8.886 -0.217 -1.070 -1.564 1.203 -1.135 -2.685 1.459 -2.186 -1.138 0.946 -2.475 -0.056 1.398 -1.281 0.201 -0.465 ML 28 26 6 31 6 1 24 101 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 24 101 134 -7.118 -5.847 -1.387 -5.825 -0.959 -4.039 0.181 -0.365 -0.401 0.414 D 30 26 6 31 6 0 18 98 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 26 103 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 27 102 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 108 a u - - MP 33 32 6 37 6 2 29 101 134 -9.490 -9.429 -0.063 -5.113 -6.848 -8.880 -0.659 -1.333 -1.836 1.457 -1.233 -2.687 1.352 -1.728 -1.903 1.275 -2.053 -0.543 1.434 -1.313 -0.002 -0.336 ML 34 32 6 37 6 1 24 100 132 -6.480 -6.827 -1.541 -0.805 -6.676 -4.206 0.113 0.184 -0.569 0.149 MR 35 32 6 37 6 1 23 99 132 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 17 96 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 26 101 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 26 100 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 107 u a - - MP 39 38 6 43 6 2 28 99 132 -9.444 -9.383 -0.078 -8.159 -4.515 -8.834 -0.998 -1.497 -1.284 1.349 -1.809 -2.668 1.455 -1.812 -1.885 1.174 -2.045 -0.369 1.532 -1.656 0.444 -0.726 ML 40 38 6 43 6 1 24 98 130 -6.942 -7.288 -0.665 -1.697 -7.138 -4.667 0.179 -0.495 -0.687 0.621 MR 41 38 6 43 6 1 23 98 130 -7.110 -5.839 -1.399 -5.817 -0.951 -4.031 0.191 -0.365 -0.391 0.400 D 42 38 6 43 6 0 17 94 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 25 99 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 25 98 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 106 u a - - MP 45 44 6 49 6 2 27 97 130 -9.446 -9.386 -0.033 -6.114 -8.442 -8.837 -2.120 -2.241 -2.294 1.543 -2.149 -3.139 1.556 -1.908 -2.347 1.139 -2.908 -0.264 1.853 -2.433 0.272 -0.930 ML 46 44 6 49 6 1 22 96 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 22 96 128 -7.662 -6.391 -0.795 -6.369 -1.503 -4.583 0.307 -0.640 0.049 0.119 D 48 44 6 49 6 0 16 93 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 24 97 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 24 96 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 105 u a - - MP 51 50 6 55 6 2 25 95 128 -9.489 -9.428 -0.016 -8.204 -8.484 -8.879 -1.945 -2.593 -2.691 1.104 -2.393 -3.533 1.976 -2.839 -2.722 1.276 -3.274 -0.651 2.070 -2.832 -0.150 -1.447 ML 52 50 6 55 6 1 21 94 126 -6.494 -6.840 -1.012 -1.249 -6.690 -4.219 0.101 0.204 -0.582 0.147 MR 53 50 6 55 6 1 20 93 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 16 91 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 23 95 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 23 95 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 104 g c - - MP 57 56 6 61 6 2 23 93 126 -9.504 -9.443 -0.016 -8.220 -8.500 -8.895 -3.650 -1.997 -3.558 1.679 -4.167 -4.213 0.625 -4.084 -3.878 2.948 -4.213 -0.286 0.394 -3.481 -1.187 -2.551 ML 58 56 6 61 6 1 20 92 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 18 92 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 15 90 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 21 93 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 21 93 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 103 G C - - MP 63 62 6 67 4 2 21 91 124 -7.819 -8.026 -0.053 -5.151 -5.264 -1.189 -5.327 0.114 -6.323 -5.038 -1.398 -5.825 -4.857 3.698 -5.138 -1.146 -1.671 -4.795 -3.452 -4.243 ML 64 62 6 67 4 1 19 91 123 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 16 90 123 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 15 89 122 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 20 92 124 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 20 91 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 69 68 6 71 3 1 20 89 122 -9.114 -0.011 -7.432 1.552 -2.504 -0.604 -2.095 D 70 68 6 71 3 0 14 88 121 -5.832 -0.608 -1.615 IL 71 71 3 71 3 1 18 90 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 102 - g - - MR 72 71 3 74 3 1 19 88 121 -9.137 -0.011 -7.454 0.658 -1.539 0.736 -1.280 D 73 71 3 74 3 0 13 86 119 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 17 89 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 101 - G - - MR 75 74 3 77 3 1 18 87 120 -9.137 -0.011 -7.454 -1.724 -2.255 1.688 -1.916 D 76 74 3 77 3 0 12 85 118 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 16 88 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 100 - C - - MR 78 77 3 80 3 1 17 86 119 -9.137 -0.011 -7.454 -3.624 1.895 -4.367 -2.728 D 79 77 3 80 3 0 11 84 117 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 15 87 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 99 - C - - MR 81 80 3 83 3 1 16 85 118 -9.137 -0.011 -7.454 -3.069 1.818 -3.869 -1.808 D 82 80 3 83 3 0 10 83 116 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 15 86 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 98 - A - - MR 84 83 3 86 3 1 16 84 117 -9.137 -0.011 -7.454 1.613 -1.742 -1.478 -1.824 D 85 83 3 86 3 0 9 82 115 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 14 85 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 97 - A - - MR 87 86 3 89 3 1 15 83 116 -9.137 -0.011 -7.454 1.697 -2.775 -1.234 -2.430 D 88 86 3 89 3 0 8 81 114 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 13 84 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 96 - C - - MR 90 89 3 92 3 1 14 82 115 -9.137 -0.011 -7.454 -0.911 1.440 -2.504 -0.788 D 91 89 3 92 3 0 8 80 113 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 13 83 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 95 - G - - MR 93 92 3 95 3 1 13 81 114 -9.137 -0.011 -7.454 -3.150 -4.552 1.917 -3.892 D 94 92 3 95 3 0 7 79 112 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 12 82 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 94 - U - - MR 96 95 3 98 3 1 13 80 113 -9.137 -0.011 -7.454 -1.802 -0.447 -2.576 1.491 D 97 95 3 98 3 0 6 78 111 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 11 81 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 93 - G - - MR 99 98 3 101 3 1 12 79 112 -9.137 -0.011 -7.454 -0.839 -3.045 1.653 -2.524 D 100 98 3 101 3 0 5 77 110 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 10 80 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 92 - g - - MR 102 101 3 104 3 1 11 78 111 -9.137 -0.011 -7.454 0.480 -1.740 0.805 -0.840 D 103 101 3 104 3 0 4 76 109 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 9 79 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 91 - U - - MR 105 104 3 107 3 1 11 77 110 -9.137 -0.011 -7.454 -1.847 -1.549 -2.249 1.664 D 106 104 3 107 3 0 4 75 108 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 9 78 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 90 - G - - MR 108 107 3 110 3 1 10 76 109 -9.137 -0.011 -7.454 -0.516 -1.305 1.264 -1.015 D 109 107 3 110 3 0 3 75 107 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 8 77 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 89 - A - - MR 111 110 3 113 5 1 9 75 108 -7.835 -0.023 -7.650 -7.862 -8.754 1.715 -2.556 -1.767 -1.986 D 112 110 3 113 5 0 2 74 106 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 6 76 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 13 88 g c - - MP 114 113 3 118 6 2 10 74 107 -9.504 -9.443 -0.016 -8.220 -8.500 -8.895 -2.474 -2.281 -1.904 1.921 -2.044 -3.396 1.165 -2.957 -2.719 2.197 -3.234 -0.032 0.904 -2.681 -0.680 -1.398 ML 115 113 3 118 6 1 4 73 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 3 72 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 70 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 5 74 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 5 74 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 14 87 g c - - MP 120 119 6 124 6 2 8 72 105 -9.504 -9.443 -0.016 -8.220 -8.500 -8.895 -3.914 -2.708 -3.806 1.984 -4.536 -4.464 0.350 -4.322 -4.089 2.982 -4.415 -0.356 0.069 -3.739 -1.842 -2.756 ML 121 119 6 124 6 1 3 71 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 2 71 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 68 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 4 72 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 4 72 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 15 86 C G - - MP 126 125 6 130 4 2 7 70 103 -6.005 -8.026 -0.045 -6.440 -4.504 -4.420 -4.332 0.261 -3.121 -4.882 3.334 -3.866 -4.314 -0.312 -4.690 -2.280 0.809 -4.619 0.434 -3.129 ML 127 125 6 130 4 1 2 70 102 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 69 102 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 68 100 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 4 71 103 -1.809 -2.492 -0.985 -4.978 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 4 70 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 17 - g - - - ML 132 131 6 134 3 1 5 68 101 -8.788 -0.012 -7.442 -0.132 -1.149 0.554 0.224 D 133 131 6 134 3 0 0 66 99 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 3 69 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 18 - a - - - ML 135 134 3 137 3 1 5 67 100 -8.788 -0.012 -7.442 0.753 -1.069 -0.487 0.170 D 136 134 3 137 3 0 0 65 98 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 3 68 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 19 - U - - - ML 138 137 3 140 3 1 4 66 99 -8.788 -0.012 -7.442 -0.452 -0.907 -1.373 1.232 D 139 137 3 140 3 0 0 64 97 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 2 67 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 20 - G - - - ML 141 140 3 143 3 1 4 65 98 -8.788 -0.012 -7.442 -3.150 -4.552 1.917 -3.892 D 142 140 3 143 3 0 0 63 96 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 2 66 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 21 - A - - - ML 144 143 3 146 3 1 3 64 97 -8.788 -0.012 -7.442 1.914 -3.979 -3.473 -3.675 D 145 143 3 146 3 0 0 63 95 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 65 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 22 - a - - - ML 147 146 3 149 3 1 2 63 96 -9.137 -0.011 -7.454 0.708 -0.722 -0.898 0.291 D 148 146 3 149 3 0 0 62 94 -5.620 -0.734 -1.403 IL 149 149 3 149 3 1 1 64 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 85 - A - - MR 150 149 3 152 3 1 2 62 95 -9.137 -0.011 -7.454 1.914 -3.979 -3.473 -3.675 D 151 149 3 152 3 0 0 60 93 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 63 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 84 - G - - MR 153 152 3 155 3 1 2 61 94 -9.137 -0.011 -7.454 -3.150 -4.552 1.917 -3.892 D 154 152 3 155 3 0 0 59 92 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 62 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 83 - g - - MR 156 155 3 158 5 1 1 60 93 -5.921 -0.041 -7.650 -7.862 -8.754 -0.659 -0.788 0.884 -0.086 D 157 155 3 158 5 0 0 59 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 60 93 -2.488 -0.465 -5.999 -4.167 -5.273 0.000 0.000 0.000 0.000 [ MATP 39 ] 23 81 g c - - MP 159 158 3 163 6 2 2 59 92 -9.504 -9.443 -0.016 -8.220 -8.500 -8.895 -3.153 -2.586 -3.215 1.060 -3.203 -3.935 1.655 -3.474 -3.329 2.269 -3.770 1.143 0.964 -3.248 -0.914 -1.613 ML 160 158 3 163 6 1 1 57 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 57 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 54 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 59 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 58 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 24 80 c g - - MP 165 164 6 169 6 2 2 57 90 -9.504 -9.443 -0.016 -8.220 -8.500 -8.895 -3.488 -3.419 -3.550 1.309 -2.792 -4.345 2.394 -3.378 -3.517 0.515 -4.030 -1.368 2.135 -3.726 0.126 -2.423 ML 166 164 6 169 6 1 1 55 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 55 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 52 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 57 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 56 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 25 79 g c - - MP 171 170 6 175 6 2 2 55 88 -9.504 -9.443 -0.016 -8.220 -8.500 -8.895 -3.145 -2.508 -3.170 1.931 -3.404 -2.768 1.174 -3.571 -3.371 2.531 -3.805 -0.208 0.690 -3.178 -1.130 -2.236 ML 172 170 6 175 6 1 1 53 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 53 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 50 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 55 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 54 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 26 78 u a - - MP 177 176 6 181 6 2 2 53 86 -6.042 -9.443 -0.036 -8.220 -8.500 -8.895 -3.086 -2.081 -3.198 0.910 -2.643 -4.037 2.158 -3.163 -3.186 0.967 -3.726 -1.093 2.346 -3.350 -0.240 -2.148 ML 178 176 6 181 6 1 1 51 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 51 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 48 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 53 85 -1.973 -3.282 -0.819 -4.937 -5.713 -5.374 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 52 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 29 77 g c - - MP 183 182 6 187 6 2 2 51 84 -9.504 -9.443 -0.016 -8.220 -8.500 -8.895 -2.808 -2.007 -2.916 1.623 -2.744 -3.722 1.570 -3.124 -2.997 1.962 -3.512 -0.687 1.643 -3.014 -0.217 -1.989 ML 184 182 6 187 6 1 1 49 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 49 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 46 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 51 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 50 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 30 76 c g - - MP 189 188 6 193 6 2 2 49 82 -9.504 -9.443 -0.016 -8.220 -8.500 -8.895 -2.931 -2.921 -3.057 0.824 -1.913 -3.899 2.138 -3.075 -3.057 1.411 -3.602 -0.414 2.018 -3.205 -0.028 -2.048 ML 190 188 6 193 6 1 1 47 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 47 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 44 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 49 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 48 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 31 75 c g - - MP 195 194 6 199 6 2 2 47 80 -5.910 -9.443 -0.038 -8.220 -8.500 -8.895 -2.436 -2.540 -2.598 1.057 -1.717 -3.446 2.031 -2.762 -1.802 1.331 -3.187 -0.893 1.850 -2.744 0.330 -1.716 ML 196 194 6 199 6 1 1 45 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 45 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 42 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 47 79 -2.839 -2.388 -0.778 -4.757 -5.533 -5.194 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 46 79 -2.485 -0.466 -5.996 -4.163 -5.269 0.000 0.000 0.000 0.000 [ MATP 46 ] 33 73 c g - - MP 201 200 6 205 4 2 2 45 78 -7.819 -1.662 -0.582 -6.440 -3.503 -3.404 -3.570 0.669 -2.789 -4.388 2.706 -3.374 -3.522 0.731 -4.044 -1.297 1.946 -3.741 -0.230 -1.586 ML 202 200 6 205 4 1 1 43 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 4 1 1 42 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 41 73 -4.568 -4.250 -2.265 -0.520 IL 205 205 5 205 4 1 1 45 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 45 78 -0.815 -1.256 -6.251 0.000 0.000 0.000 0.000 [ MATL 47 ] 34 - U - - - ML 207 206 6 209 3 1 1 30 49 -8.788 -0.012 -7.442 -0.692 -0.728 -1.958 1.333 D 208 206 6 209 3 0 0 29 48 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 35 - g - - - ML 210 209 3 212 3 1 1 29 48 -8.788 -0.202 -2.964 -0.075 -0.699 0.336 0.230 D 211 209 3 212 3 0 0 28 47 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 36 - U - - - ML 213 212 3 215 3 1 1 28 47 -2.101 -0.395 -7.253 -0.280 -0.545 -1.318 1.063 D 214 212 3 215 3 0 0 26 45 -7.761 -0.376 -2.152 IL 215 215 3 215 3 1 1 28 47 -2.314 -0.381 -5.015 0.000 0.000 0.000 0.000 [ MATL 50 ] 38 - A - - - ML 216 215 3 218 3 1 1 26 45 -8.788 -0.076 -4.355 1.821 -2.577 -2.784 -2.706 D 217 215 3 218 3 0 0 26 44 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 39 - U - - - ML 219 218 3 221 3 1 1 25 44 -8.724 -0.012 -7.378 -0.531 -0.584 -1.472 1.189 D 220 218 3 221 3 0 0 24 43 -6.944 -0.747 -1.336 IL 221 221 3 221 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 40 - u - - - ML 222 221 3 224 3 1 1 24 43 -8.788 -0.012 -7.442 -0.069 -0.329 -0.466 0.611 D 223 221 3 224 3 0 0 23 42 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 41 - U - - - ML 225 224 3 227 3 1 1 23 42 -8.788 -0.033 -5.635 -2.078 -1.114 -2.830 1.660 D 226 224 3 227 3 0 0 22 41 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 42 - G - - - ML 228 227 3 230 3 1 1 22 41 -8.767 -0.012 -7.421 -3.116 -4.516 1.915 -3.858 D 229 227 3 230 3 0 0 21 40 -6.479 -1.992 -0.440 IL 230 230 3 230 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 43 - G - - - ML 231 230 3 233 3 1 1 21 39 -8.767 -0.012 -7.421 -3.116 -4.516 1.915 -3.858 D 232 230 3 233 3 0 0 20 39 -6.479 -1.178 -0.871 IL 233 233 3 233 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 44 - G - - - ML 234 233 3 236 3 1 1 20 38 -8.788 -0.012 -7.442 -0.793 -2.128 1.419 -0.944 D 235 233 3 236 3 0 0 19 38 -6.174 -1.687 -0.566 IL 236 236 3 236 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 45 - C - - - ML 237 236 3 239 3 1 1 19 37 -5.671 -0.037 -7.442 -2.814 1.767 -3.651 -1.417 D 238 236 3 239 3 0 0 17 36 -6.174 -1.687 -0.566 IL 239 239 3 239 3 1 1 21 39 -1.541 -0.728 -4.241 0.000 0.000 0.000 0.000 [ MATL 58 ] 47 - A - - - ML 240 239 3 242 3 1 1 17 35 -8.788 -0.012 -7.442 1.506 -2.481 -0.432 -2.058 D 241 239 3 242 3 0 0 17 35 -6.174 -1.687 -0.566 IL 242 242 3 242 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 48 - C - - - ML 243 242 3 245 3 1 1 16 34 -8.788 -0.012 -7.442 -1.987 1.467 -2.907 -0.235 D 244 242 3 245 3 0 0 16 34 -6.174 -1.687 -0.566 IL 245 245 3 245 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 49 - u - - - ML 246 245 3 248 3 1 1 14 33 -8.788 -0.012 -7.442 -1.500 0.782 -2.369 0.794 D 247 245 3 248 3 0 0 15 33 -6.174 -1.687 -0.566 IL 248 248 3 248 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 50 - U - - - ML 249 248 3 251 3 1 1 12 31 -8.788 -0.012 -7.442 -0.947 -1.317 -2.245 1.520 D 250 248 3 251 3 0 0 13 32 -6.174 -1.687 -0.566 IL 251 251 3 251 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 51 - u - - - ML 252 251 3 254 2 1 1 1 1 * 0.000 0.042 -0.905 -0.012 0.530 D 253 251 3 254 2 0 0 0 0 * 0.000 IL 254 254 3 254 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 255 254 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME c-di-GMP-II ACC RF01786 DESC Cyclic di-GMP-II riboswitch aptamer LENG 84 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 20:50:44 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /homes/nancyontiveros/3D_families/3D_release15/RF01786/CM NSEQ 54 EFFN 20.892700 CKSUM 1526816564 STATS LOCAL MSV -8.6015 0.71857 STATS LOCAL VITERBI -9.2317 0.71857 STATS LOCAL FORWARD -4.0077 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37821 1.55375 1.23737 1.40091 1.38629 1.38629 1.38629 1.38629 0.02271 5.48184 4.00123 1.46634 0.26236 0.00000 * 1 0.95878 1.70255 1.73424 1.35523 1 a - - < 1.38629 1.38629 1.38629 1.38629 0.00848 5.46760 5.46760 1.46634 0.26236 1.85561 0.17003 2 1.07408 1.66895 1.78636 1.19609 2 a - - < 1.38629 1.38629 1.38629 1.38629 0.00848 5.46760 5.46760 1.46634 0.26236 1.85561 0.17003 3 1.19596 1.73993 1.44860 1.24774 3 a - - < 1.38629 1.38629 1.38629 1.38629 0.00848 5.46760 5.46760 1.46634 0.26236 1.85561 0.17003 4 1.20144 1.63067 1.72574 1.12270 4 u - - < 1.38629 1.38629 1.38629 1.38629 0.00848 5.46760 5.46760 1.46634 0.26236 1.85561 0.17003 5 1.25921 1.63076 1.56323 1.16834 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.00848 5.46760 5.46760 1.46634 0.26236 0.37500 1.16247 6 1.22213 1.72316 1.51069 1.18371 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.02184 5.48184 4.04902 1.46634 0.26236 1.09861 0.40547 7 1.35701 1.74937 1.58997 1.00853 7 u - - < 1.38629 1.38629 1.38629 1.38629 0.10406 5.46847 2.35796 1.46634 0.26236 0.39020 1.12987 8 1.36369 1.81334 1.74561 0.89983 8 u - - < 1.38629 1.38629 1.38629 1.38629 0.00918 5.38841 5.38841 1.46634 0.26236 0.08540 2.50276 9 1.87784 1.32655 1.75191 0.89589 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 10 1.38321 2.63885 0.53695 2.37239 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 11 2.55922 5.20459 0.09308 5.11222 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02879 5.48184 3.72063 1.46634 0.26236 1.09861 0.40547 12 0.21023 4.72684 1.76532 4.64450 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.00853 5.46157 5.46157 1.46634 0.26236 0.29541 1.36347 13 0.98803 2.20988 0.88591 2.24774 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 14 1.13213 2.93084 0.56622 2.87110 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 15 2.83549 0.21834 4.57483 2.06237 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.02201 4.03965 5.48184 0.42016 1.06985 1.09861 0.40547 16 1.70599 2.80854 0.78088 1.20360 17 g - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 17 0.72400 2.69591 1.77761 1.27773 18 a - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 18 1.91882 2.39508 2.75919 0.35852 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 19 5.03917 6.20692 0.01244 5.55582 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 20 0.01034 5.93807 5.50048 5.63549 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 21 0.75947 2.13176 2.29141 1.16368 22 a - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 22 2.26364 1.51748 0.60161 2.04923 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 23 1.66944 1.00369 3.13979 0.91172 24 u - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 24 1.08178 1.96594 0.82925 2.46974 25 g - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 25 2.13252 1.22060 2.32275 0.71661 26 u - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.33647 5.48184 0.77559 0.61698 1.09861 0.40547 26 1.32066 1.78495 1.29064 1.23739 29 u - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 27 2.44661 1.17283 1.45795 0.99099 30 u - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 28 2.05620 1.21304 1.54853 1.01554 31 u - - < 1.38629 1.38629 1.38629 1.38629 0.04400 3.24727 5.48184 0.20184 1.69950 1.09861 0.40547 29 2.55024 0.64763 2.55599 1.13620 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 30 2.16987 2.11196 4.04190 0.29137 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 31 1.63059 2.04921 0.96428 1.22386 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.17706 5.48184 1.84445 1.46634 0.26236 1.09861 0.40547 32 1.74884 1.93815 2.81183 0.47488 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.37172 1.18569 5.31466 0.03189 3.46125 0.05130 2.99554 33 0.04553 3.63392 4.75862 4.65477 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06457 5.48184 2.84102 1.46634 0.26236 1.09861 0.40547 34 2.05519 1.95560 2.96778 0.38708 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00884 5.42611 5.42611 1.46634 0.26236 0.13331 2.08098 35 1.59914 1.64414 1.69198 0.86608 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 36 4.23203 2.34157 4.74215 0.12717 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02676 5.48184 3.80575 1.46634 0.26236 1.09861 0.40547 37 5.02131 6.18692 0.01267 5.53762 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00851 5.46359 5.46359 1.46634 0.26236 1.99396 0.14636 38 5.02131 6.18692 0.01267 5.53762 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00851 5.46359 5.46359 1.46634 0.26236 0.31788 1.30082 39 2.31251 3.93110 0.26215 2.18950 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 40 4.92692 0.07382 5.31643 2.83013 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03063 3.64953 5.48184 0.29415 1.36715 1.09861 0.40547 41 0.24185 4.76930 1.62392 4.68642 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 42 4.32107 0.23324 4.98121 1.67191 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 43 4.00622 0.68742 4.72514 0.75490 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 44 2.32755 2.87687 4.26664 0.18377 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 45 1.46780 2.43356 1.26337 0.91843 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.48606 0.96550 5.48184 0.99467 0.46179 1.09861 0.40547 46 1.30958 2.69334 0.59048 2.22235 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.02433 3.91844 5.48184 0.37648 1.15924 1.09861 0.40547 47 1.17137 1.70417 1.00629 1.94798 75 g - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 48 1.09159 1.68800 1.07117 1.98908 76 g - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 49 1.41506 1.30013 1.54770 1.30248 77 c - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 50 0.78280 2.27025 1.12759 2.15612 78 a - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 51 2.61584 0.88471 1.98291 0.97712 79 c - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 52 1.08039 3.32065 0.85129 1.62181 80 g - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 53 2.31456 1.13519 1.46578 1.05288 81 u - - > 1.38629 1.38629 1.38629 1.38629 0.02514 3.87950 5.48184 0.36336 1.18855 1.09861 0.40547 54 2.67277 2.07665 0.52017 1.55508 83 G - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 55 5.03917 6.20692 0.01244 5.55582 84 G - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 56 0.01034 5.93807 5.50048 5.63549 85 A - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 57 3.15693 4.73075 0.11927 2.79594 86 G - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 58 3.05319 0.60079 2.80629 1.06715 87 C - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 59 2.39988 1.03687 2.08375 0.84340 88 u - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 60 0.10253 4.27107 2.98462 3.41371 89 A - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 61 2.06830 2.51054 0.32469 2.66470 90 G - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 62 3.87059 3.02036 3.45602 0.10668 91 U - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 63 0.99093 3.84440 0.63767 2.54021 92 G - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 64 2.11034 4.95168 0.14901 4.58802 93 G - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 65 4.19509 1.70127 4.72976 0.23111 94 U - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 66 5.03917 6.20692 0.01244 5.55582 95 G - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 67 2.22789 0.21702 4.45572 2.58070 96 C - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 68 0.12151 4.79040 2.33269 4.70245 97 A - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 69 0.14719 2.91170 2.75918 3.95572 98 A - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 70 5.04784 0.05032 5.37917 3.26918 99 C - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 71 5.47010 0.01521 5.78680 4.85149 100 C - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 72 3.69314 3.24616 0.10898 3.23310 101 G - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 73 0.83888 3.03084 0.69763 3.82722 102 g - - - 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 74 5.09809 0.05663 5.06959 3.15446 103 C - - > 1.38629 1.38629 1.38629 1.38629 0.00836 5.48184 5.48184 1.46634 0.26236 1.09861 0.40547 75 2.67267 0.55458 2.36639 1.33636 104 C - - > 1.38629 1.38629 1.38629 1.38629 0.03280 5.48184 3.57173 1.46634 0.26236 1.09861 0.40547 76 0.97768 1.89951 1.22395 1.71420 105 a - - > 1.38629 1.38629 1.38629 1.38629 0.00856 5.45760 5.45760 1.46634 0.26236 0.25938 1.47634 77 1.19025 2.06716 1.45960 1.08773 106 u - - > 1.38629 1.38629 1.38629 1.38629 0.09248 5.48184 2.47495 1.46634 0.26236 1.09861 0.40547 78 1.38066 1.64975 1.22980 1.33129 107 g - - > 1.38629 1.38629 1.38629 1.38629 0.00909 5.39845 5.39845 1.46634 0.26236 0.40573 1.09808 79 1.32955 1.42899 1.69166 1.16590 108 u - - > 1.38629 1.38629 1.38629 1.38629 0.00855 5.45905 5.45905 1.46634 0.26236 0.27149 1.43652 80 1.12721 1.74136 1.43132 1.34021 109 a - - > 1.38629 1.38629 1.38629 1.38629 0.02271 5.48184 4.00123 1.46634 0.26236 1.09861 0.40547 81 1.26247 1.89367 1.33580 1.19211 110 u - - > 1.38629 1.38629 1.38629 1.38629 0.00848 5.46760 5.46760 1.46634 0.26236 1.85561 0.17003 82 1.10209 1.83752 1.55953 1.20939 111 a - - > 1.38629 1.38629 1.38629 1.38629 0.00848 5.46760 5.46760 1.46634 0.26236 1.85561 0.17003 83 1.27274 1.92990 1.33840 1.16312 112 u - - > 1.38629 1.38629 1.38629 1.38629 0.00848 5.46760 5.46760 1.46634 0.26236 1.85561 0.17003 84 1.14501 1.59939 1.28914 1.58841 113 a - - > 1.38629 1.38629 1.38629 1.38629 0.00425 5.46337 * 1.46634 0.26236 0.00000 * //