INFERNAL1/a [1.1.5 | Sep 2023] NAME Guanidine-III ACC RF01763 DESC Guanidine-III riboswitch aptamer (yKKC-III) STATES 210 NODES 60 CLEN 67 W 91 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 01:37:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/3Dfams/3Dreview/RF01763/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 41 EFFN 6.488831 CKSUM 186447487 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.00 NC 35.90 EFP7GF -17.1669 0.71901 ECMLC 0.56671 -10.64765 -0.10825 1600000 471109 0.002547 ECMGC 0.39348 -18.42572 -5.06762 1600000 76699 0.005215 ECMLI 0.57837 -7.71323 1.16669 1600000 204017 0.005882 ECMGI 0.43694 -13.90656 -2.32104 1600000 63172 0.006332 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 91 120 -8.146 -8.353 -0.064 -4.761 IL 1 1 2 1 4 2 25 93 122 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 93 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 3 24 91 120 -9.064 -0.010 -7.718 0.032 -0.521 0.394 -0.048 D 4 2 3 5 3 0 20 88 117 -6.803 -2.316 -0.340 IL 5 5 3 5 3 1 24 92 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 2 23 90 119 -9.064 -0.010 -7.718 0.025 0.105 0.009 -0.150 D 7 5 3 8 3 0 20 88 116 -6.803 -2.316 -0.340 IL 8 8 3 8 3 1 23 91 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 2 22 89 118 -9.064 -0.010 -7.718 0.308 -0.250 -0.075 -0.041 D 10 8 3 11 3 0 19 87 116 -6.803 -2.316 -0.340 IL 11 11 3 11 3 1 22 90 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 21 88 117 -9.064 -0.166 -3.227 0.048 -0.824 0.423 0.085 D 13 11 3 14 3 0 19 86 115 -6.803 -2.316 -0.340 IL 14 14 3 14 3 1 21 89 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 1 20 87 116 -9.253 -0.428 -1.971 0.157 -0.252 -0.362 0.342 D 16 14 3 17 3 0 19 86 115 -6.978 -1.186 -0.856 IL 17 17 3 17 3 1 21 88 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 85 - u - - MR 18 17 3 20 3 1 20 86 115 -8.926 -0.013 -7.244 -0.369 0.220 -0.972 0.633 D 19 17 3 20 3 0 18 85 114 -9.049 -0.495 -1.793 IR 20 20 3 20 3 1 20 87 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 84 - c - - MR 21 20 3 23 3 1 19 85 114 -9.342 -0.009 -7.660 -0.043 0.193 -0.225 0.043 D 22 20 3 23 3 0 17 84 113 -7.509 -1.050 -0.967 IR 23 23 3 23 3 1 19 86 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 83 - a - - MR 24 23 3 26 2 1 18 84 113 -9.603 -0.002 0.301 -0.130 0.092 -0.343 D 25 23 3 26 2 0 17 83 112 -4.998 -0.046 IR 26 26 3 26 2 1 18 85 114 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 9 ] - - - - - - B 27 26 3 28 75 0 17 83 112 [ BEGL 10 ] - - - - - - S 28 27 1 29 4 0 0 39 68 -0.078 -7.559 -5.477 -5.348 [ MATP 11 ] 6 28 g c - - MP 29 28 1 33 6 2 2 39 68 -9.645 -9.585 -0.015 -8.361 -8.641 -9.036 -3.744 -2.821 -3.685 0.928 -3.899 -4.373 1.585 -4.035 -3.921 2.812 -4.298 0.384 0.295 -3.653 -0.480 -2.638 ML 30 28 1 33 6 1 1 37 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 1 33 6 1 1 37 66 -7.261 -5.990 -1.182 -5.968 -1.102 -4.182 0.833 -0.714 -0.440 -0.198 D 32 28 1 33 6 0 0 34 62 -9.545 -8.244 -4.041 -4.723 -4.740 -0.219 IL 33 33 5 33 6 1 1 38 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 38 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 27 c g - - MP 35 34 6 39 6 2 2 37 66 -9.663 -9.602 -0.060 -8.379 -8.659 -4.925 -3.170 -3.152 -3.287 0.445 -0.657 -4.129 2.452 -3.257 -3.275 1.344 -3.817 -0.180 1.778 -3.441 -0.477 -2.245 ML 36 34 6 39 6 1 1 35 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 35 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 31 60 -9.545 -8.244 -4.041 -4.723 -4.740 -0.219 IL 39 39 5 39 6 1 1 36 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 36 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 26 c g - - MP 41 40 6 45 6 2 2 35 64 -9.618 -9.557 -0.082 -8.333 -8.613 -4.404 -3.806 -3.644 -3.847 0.528 -2.962 -4.659 2.674 -3.570 -3.780 1.101 -4.292 -1.438 1.998 -4.022 -0.246 -2.615 ML 42 40 6 45 6 1 1 33 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 33 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 29 58 -10.175 -8.874 -4.671 -5.353 -5.370 -0.137 IL 45 45 5 45 6 1 1 34 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 34 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 25 c g - - MP 47 46 6 51 6 2 2 33 62 -9.551 -9.490 -0.248 -8.267 -8.546 -2.746 -1.526 -2.651 -2.754 1.548 -2.450 -3.594 2.270 -2.898 -2.784 1.185 -3.335 -0.925 1.470 -2.895 -0.044 -1.846 ML 48 46 6 51 6 1 1 32 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 31 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 27 56 -10.761 -9.459 -5.256 -5.938 -5.955 -0.090 IL 51 51 5 51 6 1 1 33 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 32 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 24 c g - - MP 53 52 6 57 4 2 2 31 60 -3.413 -2.401 -0.511 -6.074 -3.170 -2.909 -3.240 0.751 -2.742 -4.047 2.162 -3.226 -3.261 1.828 -3.767 -0.261 1.822 -3.361 -0.407 -2.159 ML 54 52 6 57 4 1 1 30 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 4 1 1 29 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 56 52 6 57 4 0 0 26 54 -7.222 -1.810 -0.899 -2.540 IL 57 57 5 57 4 1 1 33 62 -0.921 -1.823 -2.507 -6.245 0.000 0.000 0.000 0.000 IR 58 58 6 58 3 1 1 26 49 -1.139 -0.913 -6.077 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - c - - - ML 59 58 6 61 3 1 1 17 35 -9.064 -0.010 -7.718 0.036 0.143 -0.219 0.016 D 60 58 6 61 3 0 0 16 35 -6.803 -2.316 -0.340 IL 61 61 3 61 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - u - - - ML 62 61 3 64 3 1 1 15 34 -9.064 -0.010 -7.718 0.233 -0.097 -0.543 0.267 D 63 61 3 64 3 0 0 15 34 -6.803 -2.316 -0.340 IL 64 64 3 64 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - a - - - ML 65 64 3 67 3 1 1 14 32 -9.064 -0.225 -2.809 0.368 -0.166 -0.650 0.240 D 66 64 3 67 3 0 0 14 32 -6.803 -2.316 -0.340 IL 67 67 3 67 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - c - - - ML 68 67 3 70 3 1 1 12 31 -8.850 -0.307 -2.401 -0.051 0.229 -0.289 0.062 D 69 67 3 70 3 0 0 12 30 -8.272 -3.785 -0.114 IL 70 70 3 70 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - u - - - ML 71 70 3 73 2 1 1 1 1 * 0.000 -0.025 0.112 -0.355 0.207 D 72 70 3 73 2 0 0 0 0 * 0.000 IL 73 73 3 73 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 74 73 3 -1 0 0 0 0 0 [ BEGR 22 ] - - - - - - S 75 27 1 76 3 0 7 60 80 -2.122 -0.881 -2.137 IL 76 76 2 76 3 1 10 61 81 -1.789 -0.539 -5.481 0.000 0.000 0.000 0.000 [ MATL 23 ] 31 - c - - - ML 77 76 2 79 3 1 10 59 79 -8.740 -0.012 -7.394 -0.283 0.543 -0.880 0.236 D 78 76 2 79 3 0 5 58 77 -8.643 -0.721 -1.355 IL 79 79 3 79 3 1 9 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 32 - c - - - ML 80 79 3 82 3 1 9 58 78 -8.994 -0.010 -7.648 -0.197 0.593 -1.248 0.261 D 81 79 3 82 3 0 3 57 77 -7.489 -0.468 -1.881 IL 82 82 3 82 3 1 7 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 33 - C - - - ML 83 82 3 85 3 1 8 57 77 -9.103 -0.009 -7.757 -3.138 1.828 -2.694 -2.453 D 84 82 3 85 3 0 2 56 75 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 6 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 34 - C - - - ML 86 85 3 88 3 1 7 56 75 -9.103 -0.009 -7.757 -4.168 1.927 -4.828 -3.241 D 87 85 3 88 3 0 1 55 74 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 5 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 35 - G - - - ML 89 88 3 91 3 1 6 55 74 -9.103 -0.009 -7.757 -1.884 -1.200 1.631 -2.346 D 90 88 3 91 3 0 1 54 73 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - G - - - ML 92 91 3 94 3 1 5 54 73 -9.103 -0.009 -7.757 -3.624 -5.075 1.941 -4.363 D 93 91 3 94 3 0 1 53 72 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 4 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - A - - - ML 95 94 3 97 3 1 4 53 72 -9.103 -0.009 -7.757 1.941 -4.516 -3.983 -4.234 D 96 94 3 97 3 0 1 52 71 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 4 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 38 - C - - - ML 98 97 3 100 3 1 3 52 71 -9.103 -0.009 -7.757 -4.168 1.927 -4.828 -3.241 D 99 97 3 100 3 0 0 51 70 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 3 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 39 - G - - - ML 101 100 3 103 3 1 2 51 70 -9.103 -0.009 -7.757 -3.624 -5.075 1.941 -4.363 D 102 100 3 103 3 0 0 50 69 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 40 - A - - - ML 104 103 3 106 3 1 1 50 69 -9.103 -0.405 -2.042 1.941 -4.516 -3.983 -4.234 D 105 103 3 106 3 0 0 49 68 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 41 - G - - - ML 107 106 3 109 3 1 2 49 68 -8.711 -0.012 -7.365 -1.823 -2.809 1.676 -1.395 D 108 106 3 109 3 0 0 48 67 -8.723 -0.181 -3.114 IL 109 109 3 109 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 42 - g - - - ML 110 109 3 112 3 1 2 48 67 -9.103 -0.009 -7.757 0.189 -0.883 0.928 -1.269 D 111 109 3 112 3 0 0 47 66 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - g - - - ML 113 112 3 115 5 1 2 47 66 -8.129 -0.019 -7.944 -8.156 -9.048 -0.665 0.052 0.469 -0.076 D 114 112 3 115 5 0 0 46 65 -4.959 -0.803 -4.221 -2.596 -2.508 IL 115 115 3 115 5 1 1 47 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 44 82 G C - - MP 116 115 3 120 6 2 3 46 65 -9.687 -9.626 -0.014 -8.403 -8.682 -9.077 -6.311 -3.977 -6.688 -0.967 -7.646 -5.439 -2.530 -7.014 -5.353 3.830 -5.619 -0.517 -2.814 -5.545 -4.680 -5.549 ML 117 115 3 120 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 3 120 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 3 120 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 45 81 c g - - MP 122 121 6 126 6 2 2 44 63 -5.417 -9.626 -0.113 -4.428 -8.682 -9.077 -1.983 -0.523 -2.177 0.976 -2.103 -2.230 2.404 -2.479 -2.227 0.713 -2.787 -0.730 1.068 -0.434 0.178 -1.408 ML 123 121 6 126 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 45 64 -1.623 -3.620 -1.127 -3.292 -6.052 -5.712 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 49 80 G C - - MP 128 127 6 132 6 2 2 42 61 -9.609 -5.321 -0.050 -8.325 -8.605 -9.000 -3.686 -1.275 -3.618 1.009 -4.293 -1.790 0.135 -4.183 -3.915 3.164 -4.255 -0.384 -0.120 -3.529 -0.139 -2.646 ML 129 127 6 132 6 1 1 41 60 -7.280 -7.626 -0.499 -2.035 -7.476 -5.005 -0.090 -0.092 -0.435 0.467 MR 130 127 6 132 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 41 60 -2.671 -0.401 -6.182 -4.350 -5.456 0.000 0.000 0.000 0.000 [ MATP 39 ] 50 78 c g - - MP 134 133 6 138 6 2 2 40 59 -9.687 -9.626 -0.014 -8.403 -8.682 -9.077 -1.496 -4.054 -3.988 -0.474 1.608 -4.653 2.990 -3.791 -4.001 -0.381 -4.452 -2.202 0.740 -4.214 -0.413 -2.953 ML 135 133 6 138 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 51 77 C G - - MP 140 139 6 144 6 2 2 38 57 -9.687 -9.626 -0.014 -8.403 -8.682 -9.077 -5.004 -4.745 -4.788 1.440 -3.579 -5.353 3.397 -4.296 -4.750 -0.735 -5.110 -2.474 0.133 -5.162 -1.207 -3.571 ML 141 139 6 144 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 52 76 G C - - MP 146 145 6 150 6 2 2 36 55 -9.687 -9.626 -0.014 -8.403 -8.682 -9.077 -6.808 -4.134 -7.498 -1.308 -8.013 -5.468 -2.868 -7.623 -5.486 3.896 -5.727 -1.965 -3.229 -5.750 -5.084 -6.349 ML 147 145 6 150 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 53 75 U A - - MP 152 151 6 156 4 2 2 34 53 -8.146 -8.353 -0.023 -6.768 -7.282 -7.149 -6.781 -3.396 -5.296 -7.082 -1.006 -6.136 -6.754 -3.414 -7.023 -5.047 3.909 -7.222 -2.866 -4.842 ML 153 151 6 156 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 155 151 6 156 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 156 156 5 156 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 54 - A - - - ML 158 157 6 160 3 1 1 32 50 -9.441 -0.009 -7.759 1.941 -4.516 -3.983 -4.234 D 159 157 6 160 3 0 0 30 49 -5.620 -0.734 -1.403 IL 160 160 3 160 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 74 - G - - MR 161 160 3 163 3 1 1 31 49 -9.441 -0.009 -7.759 -3.624 -5.075 1.941 -4.363 D 162 160 3 163 3 0 0 29 48 -6.390 -1.568 -0.620 IR 163 163 3 163 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 73 - A - - MR 164 163 3 166 3 1 1 30 48 -9.441 -0.009 -7.759 1.941 -4.516 -3.983 -4.234 D 165 163 3 166 3 0 0 28 47 -6.390 -1.568 -0.620 IR 166 166 3 166 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 72 - A - - MR 167 166 3 169 3 1 1 28 47 -4.330 -0.081 -7.759 1.941 -4.516 -3.983 -4.234 D 168 166 3 169 3 0 0 27 46 -6.390 -1.568 -0.620 IR 169 169 3 169 3 1 1 29 48 -1.795 -0.567 -4.754 0.000 0.000 0.000 0.000 [ MATR 47 ] - 69 - C - - MR 170 169 3 172 3 1 1 27 46 -9.441 -0.009 -7.759 -1.072 1.442 -2.152 -0.779 D 171 169 3 172 3 0 0 26 45 -6.390 -1.568 -0.620 IR 172 172 3 172 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 68 - A - - MR 173 172 3 175 5 1 1 26 45 -8.129 -0.019 -7.944 -8.156 -9.048 1.512 -1.650 -1.390 -1.157 D 174 172 3 175 5 0 0 25 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 175 175 3 175 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 55 67 C G - - MP 176 175 3 180 4 2 2 25 44 -8.146 -8.353 -0.023 -6.768 -7.687 -7.818 -6.778 -4.047 -5.197 -2.378 3.934 -6.589 -7.294 -3.939 -6.799 -5.993 -2.321 -7.654 -3.412 -6.108 ML 177 175 3 180 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 178 175 3 180 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 179 175 3 180 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 180 180 5 180 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 181 181 6 181 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 56 - C - - - ML 182 181 6 184 3 1 1 23 42 -9.103 -0.009 -7.757 -4.168 1.927 -4.828 -3.241 D 183 181 6 184 3 0 0 22 41 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 57 - C - - - ML 185 184 3 187 3 1 1 22 40 -9.103 -0.009 -7.757 -2.467 1.655 -1.327 -1.881 D 186 184 3 187 3 0 0 21 40 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 58 - G - - - ML 188 187 3 190 3 1 1 21 39 -9.103 -0.009 -7.757 -3.624 -5.075 1.941 -4.363 D 189 187 3 190 3 0 0 20 39 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 59 - G - - - ML 191 190 3 193 3 1 1 20 38 -9.103 -0.009 -7.757 -2.483 -2.536 1.820 -3.073 D 192 190 3 193 3 0 0 19 38 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 60 - u - - - ML 194 193 3 196 3 1 1 19 37 -9.103 -0.009 -7.757 -0.564 0.327 -1.954 0.856 D 195 193 3 196 3 0 0 18 36 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 61 - c - - - ML 197 196 3 199 3 1 1 18 36 -9.103 -0.009 -7.757 0.130 0.326 -0.756 0.084 D 198 196 3 199 3 0 0 16 35 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 62 - a - - - ML 200 199 3 202 3 1 1 17 35 -4.407 -0.643 -1.678 0.950 -0.509 -0.903 -0.267 D 201 199 3 202 3 0 0 14 33 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 19 37 -1.452 -0.754 -4.587 0.000 0.000 0.000 0.000 [ MATL 57 ] 65 - G - - - ML 203 202 3 205 3 1 1 13 31 -8.572 -0.013 -7.226 -1.129 -2.450 1.591 -1.523 D 204 202 3 205 3 0 0 11 30 -9.036 -0.580 -1.603 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 66 - c - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -0.429 0.988 -0.745 -0.564 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Guanidine-III ACC RF01763 DESC Guanidine-III riboswitch aptamer (yKKC-III) LENG 67 MAXL 132 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 01:37:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/3Dfams/3Dreview/RF01763/CM NSEQ 41 EFFN 14.186340 CKSUM 186447487 STATS LOCAL MSV -7.9389 0.71901 STATS LOCAL VITERBI -8.8658 0.71901 STATS LOCAL FORWARD -4.3901 0.71901 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47568 1.17454 1.15654 1.91161 1.38629 1.38629 1.38629 1.38629 0.01124 5.18696 5.18696 1.46634 0.26236 0.00000 * 1 1.42163 1.76513 1.01304 1.49431 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.01124 5.18696 5.18696 1.46634 0.26236 1.09861 0.40547 2 1.43218 1.21640 1.31122 1.63257 2 c - - : 1.38629 1.38629 1.38629 1.38629 0.01124 5.18696 5.18696 1.46634 0.26236 1.09861 0.40547 3 1.16673 1.52536 1.38488 1.51087 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.01124 5.18696 5.18696 1.46634 0.26236 1.09861 0.40547 4 1.40465 2.07515 0.99161 1.35467 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.13617 5.18696 2.10607 1.46634 0.26236 1.09861 0.40547 5 1.30268 1.55036 1.62166 1.14427 5 u - - : 1.38629 1.38629 1.38629 1.38629 0.03984 5.06352 3.41922 1.46634 0.26236 0.08786 2.47561 6 2.22585 1.59620 0.53101 2.28921 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.01151 5.16334 5.16334 1.46634 0.26236 0.32663 1.27779 7 2.72746 0.80858 1.46996 1.35019 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.07269 5.18696 2.74072 1.46634 0.26236 1.09861 0.40547 8 2.49831 0.78954 1.91477 1.15092 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.10583 5.12622 2.35934 1.46634 0.26236 2.60601 0.07670 9 1.40046 1.02128 1.84151 1.44900 9 c - - < 1.38629 1.38629 1.38629 1.38629 0.37713 5.03351 1.17878 1.46634 0.26236 3.34828 0.03578 10 2.36952 1.13397 1.25186 1.20815 10 c - - < 1.38629 1.38629 1.38629 1.38629 0.12957 2.18746 4.67520 1.10914 0.40024 0.02715 3.61993 11 1.41901 1.19444 1.49576 1.46492 15 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01124 5.18696 5.18696 1.46634 0.26236 1.09861 0.40547 12 1.22940 1.41200 1.78533 1.21694 16 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01124 5.18696 5.18696 1.46634 0.26236 1.09861 0.40547 13 1.10764 1.47252 1.89096 1.23999 17 a - - _ 1.38629 1.38629 1.38629 1.38629 0.18411 5.18696 1.81669 1.46634 0.26236 1.09861 0.40547 14 1.50720 1.12005 1.55069 1.42667 18 c - - _ 1.38629 1.38629 1.38629 1.38629 0.21328 5.01620 1.68503 1.46634 0.26236 3.43678 0.03270 15 1.48225 1.21756 1.60809 1.28500 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.75553 1.04701 1.71896 0.70682 0.67966 0.62629 0.76480 16 1.33066 1.44034 1.04381 1.91910 24 g - - > 1.38629 1.38629 1.38629 1.38629 0.05426 4.88809 3.09493 1.46634 0.26236 0.60876 0.78531 17 1.59810 1.95734 0.89571 1.39366 25 g - - > 1.38629 1.38629 1.38629 1.38629 0.01312 5.03351 5.03351 1.46634 0.26236 0.58140 0.81897 18 1.29083 2.00845 0.71093 2.30686 26 g - - > 1.38629 1.38629 1.38629 1.38629 0.01195 5.12622 5.12622 1.46634 0.26236 0.15977 1.91286 19 1.27325 1.76483 0.86645 2.05242 27 g - - > 1.38629 1.38629 1.38629 1.38629 0.01124 5.18696 5.18696 1.46634 0.26236 1.09861 0.40547 20 2.74513 0.70277 1.40642 1.63204 28 c - - > 1.38629 1.38629 1.38629 1.38629 0.70657 1.30164 1.44995 0.30002 1.35017 1.09861 0.40547 21 1.73068 0.87604 2.08305 1.26635 31 c - - - 1.38629 1.38629 1.38629 1.38629 0.01460 4.92691 4.92691 1.46634 0.26236 0.30859 1.32606 22 1.61251 0.85636 2.45929 1.23645 32 c - - - 1.38629 1.38629 1.38629 1.38629 0.01189 5.13137 5.13137 1.46634 0.26236 0.17172 1.84653 23 4.42850 0.07025 3.27773 4.00665 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 24 5.09782 0.02210 5.43599 4.47536 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 25 3.50322 2.13828 0.18494 3.86859 35 G - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 26 4.68792 5.80653 0.01790 5.19828 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 27 0.01584 5.48513 5.07591 5.23610 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 28 5.09782 0.02210 5.43599 4.47536 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 29 4.68792 5.80653 0.01790 5.19828 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 30 0.01584 5.48513 5.07591 5.23610 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.32976 5.21783 1.28923 1.46634 0.26236 1.09861 0.40547 31 3.39811 4.12782 0.14550 2.45508 41 G - - - 1.38629 1.38629 1.38629 1.38629 0.01496 4.90304 4.90304 1.46634 0.26236 0.03859 3.27404 32 1.27397 2.03635 0.61856 2.97478 42 G - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 33 2.22358 1.25641 0.93259 1.54378 43 g - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 34 4.00439 5.14121 0.03056 5.11324 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 35 1.74990 0.74165 2.26987 1.40016 45 c - - < 1.38629 1.38629 1.38629 1.38629 0.05379 3.05869 5.21783 0.85496 0.55391 1.09861 0.40547 36 2.00035 2.51761 0.42570 2.03451 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 37 3.14474 0.16731 3.99763 2.37918 50 C - - < 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 38 1.66633 0.28837 3.98028 3.14896 51 C - - < 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 39 4.03422 5.07771 0.03085 5.04468 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 40 5.64898 4.71125 5.76253 0.01578 53 U - - < 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 41 0.01584 5.48513 5.07591 5.23610 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 42 5.35729 0.02917 5.30399 3.96007 55 C - - < 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 43 5.09782 0.02210 5.43599 4.47536 56 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 44 4.20827 0.15807 2.22851 3.74454 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 45 4.68792 5.80653 0.01790 5.19828 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 46 3.94420 3.22277 0.07474 4.35822 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 47 1.95312 1.07426 3.35628 0.73032 60 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 48 1.31714 1.06013 1.97358 1.39945 61 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 49 0.64181 1.75495 2.13019 1.70413 62 A - - _ 1.38629 1.38629 1.38629 1.38629 0.52978 2.86843 1.03710 0.54490 0.86726 1.09861 0.40547 50 2.47585 3.61395 0.19769 2.68321 65 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01679 4.78849 4.78849 1.46634 0.26236 0.34455 1.23285 51 1.86019 0.54499 1.92810 2.12792 66 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01206 5.11731 5.11731 1.46634 0.26236 0.10188 2.33449 52 4.24853 3.46859 0.05221 5.21713 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 53 0.24726 2.83110 2.56217 2.48916 68 A - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 54 2.31558 0.28617 3.16532 2.22604 69 C - - - 1.38629 1.38629 1.38629 1.38629 0.06969 2.78234 5.21783 0.50833 0.92005 1.09861 0.40547 55 0.01584 5.48513 5.07591 5.23610 72 A - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 56 0.01584 5.48514 5.07591 5.23610 73 A - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 57 4.68792 5.80653 0.01790 5.19828 74 G - - - 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 58 0.01872 5.98625 4.48017 5.36060 75 A - - > 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 59 5.13223 0.03691 5.03086 3.73793 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 60 3.44878 4.24101 0.27346 1.64466 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 61 1.04582 4.23218 0.48494 3.99869 78 G - - > 1.38629 1.38629 1.38629 1.38629 0.16364 3.04903 2.26774 0.21478 1.64362 1.09861 0.40547 62 3.22527 0.34028 2.15449 2.01952 80 C - - > 1.38629 1.38629 1.38629 1.38629 0.01209 5.11455 5.11455 1.46634 0.26236 0.09955 2.35649 63 2.12252 1.54720 0.63711 1.97608 81 G - - > 1.38629 1.38629 1.38629 1.38629 0.01090 5.21783 5.21783 1.46634 0.26236 1.09861 0.40547 64 5.11797 0.07585 4.99278 2.80899 82 C - - > 1.38629 1.38629 1.38629 1.38629 0.01124 5.18696 5.18696 1.46634 0.26236 1.09861 0.40547 65 1.17658 1.40444 1.25036 1.83408 83 a - - : 1.38629 1.38629 1.38629 1.38629 0.06156 5.18696 2.91667 1.46634 0.26236 1.09861 0.40547 66 1.49736 1.15299 1.49783 1.43981 84 c - - : 1.38629 1.38629 1.38629 1.38629 0.36919 5.13722 1.19459 1.46634 0.26236 2.45807 0.08949 67 1.82024 1.13433 2.17544 0.90927 85 u - - : 1.38629 1.38629 1.38629 1.38629 0.00846 4.77650 * 1.46634 0.26236 0.00000 * //