INFERNAL1/a [1.1.5 | Sep 2023] NAME Pyrobac-1 ACC RF01722 DESC Pyrobac-1 RNA STATES 184 NODES 48 CLEN 60 W 80 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 05:42:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01722/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 4.800781 CKSUM 1155749080 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 58.80 NC 37.40 EFP7GF -12.1590 0.72017 ECMLC 0.53246 -8.45240 2.49939 1600000 408980 0.002934 ECMGC 0.38698 -18.97852 -3.70696 1600000 147447 0.002713 ECMLI 0.55165 -6.04076 3.60984 1600000 246179 0.004875 ECMGI 0.41110 -14.70322 -1.13514 1600000 105797 0.003781 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 102 -7.808 -8.015 -0.029 -6.429 IL 1 1 2 1 4 1 15 83 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 82 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 14 80 103 -8.778 -0.012 -7.432 1.633 -2.221 -2.248 -1.076 D 4 2 3 5 3 0 10 78 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 81 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 1 13 79 102 -8.778 -0.012 -7.432 -0.130 0.678 -0.299 -0.569 D 7 5 3 8 3 0 9 77 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 80 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 12 78 101 -8.778 -0.266 -2.588 0.453 -0.583 -0.708 0.434 D 10 8 3 11 3 0 9 76 99 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 13 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 12 77 100 -8.525 -0.014 -7.179 -0.183 -1.403 0.901 -0.194 D 13 11 3 14 3 0 8 76 98 -8.026 -0.306 -2.417 IL 14 14 3 14 3 1 11 78 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 11 76 99 -8.778 -0.012 -7.432 -2.094 1.530 -3.008 -0.407 D 16 14 3 17 3 0 4 74 97 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 10 77 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 10 75 98 -8.778 -0.012 -7.432 -1.150 1.608 -2.911 -1.443 D 19 17 3 20 3 0 3 73 96 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 9 76 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 9 74 97 -8.778 -0.012 -7.432 -1.631 -2.547 1.577 -0.935 D 22 20 3 23 3 0 2 72 95 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 8 75 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - g - - - ML 24 23 3 26 3 1 8 73 96 -8.778 -0.012 -7.432 -0.105 -0.096 0.625 -0.756 D 25 23 3 26 3 0 2 71 94 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 7 74 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 7 72 95 -8.778 -0.012 -7.432 -3.133 -4.534 1.916 -3.875 D 28 26 3 29 3 0 1 70 93 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 6 73 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 6 71 94 -9.127 -0.011 -7.444 1.913 -3.960 -3.456 -3.656 D 31 29 3 32 3 0 1 69 92 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 4 71 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 65 - U - - MR 33 32 3 35 3 1 6 70 93 -9.127 -0.011 -7.444 -0.805 -1.735 -2.330 1.550 D 34 32 3 35 3 0 0 68 91 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 4 70 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 64 - g - - MR 36 35 3 38 3 1 5 69 92 -9.127 -0.011 -7.444 -0.697 0.077 0.553 -0.215 D 37 35 3 38 3 0 0 67 90 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 3 69 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 63 - u - - MR 39 38 3 41 3 1 4 68 91 -9.127 -0.011 -7.444 -1.484 0.644 -2.337 0.912 D 40 38 3 41 3 0 0 66 89 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 2 68 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 62 - G - - MR 42 41 3 44 3 1 4 67 90 -9.127 -0.011 -7.444 -1.775 -2.730 1.641 -1.188 D 43 41 3 44 3 0 0 65 88 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 67 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 61 - g - - MR 45 44 3 47 3 1 3 66 89 -9.127 -0.011 -7.444 -0.648 -0.662 0.509 0.386 D 46 44 3 47 3 0 0 64 87 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 66 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 60 - g - - MR 48 47 3 50 3 1 3 65 88 -9.127 -0.011 -7.444 -0.975 0.483 0.659 -0.957 D 49 47 3 50 3 0 0 63 86 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 65 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 59 - a - - MR 51 50 3 53 5 1 3 64 87 -7.825 -0.023 -7.641 -7.853 -8.745 0.884 -2.294 0.728 -1.765 D 52 50 3 53 5 0 0 62 85 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 1 64 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 58 C G - - MP 54 53 3 58 6 2 3 63 86 -2.335 -9.438 -0.336 -8.214 -8.494 -8.889 -5.139 -5.199 -4.719 -1.332 -3.257 -5.041 3.476 -4.102 -4.762 -1.199 -5.003 -3.229 0.240 -5.124 1.191 -3.568 ML 55 53 3 58 6 1 1 59 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 1 58 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 55 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 63 86 -1.168 -5.443 -0.958 -7.098 -7.874 -7.534 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 57 c g - - MP 60 59 6 64 6 2 3 56 75 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -3.643 -3.059 -3.757 1.151 -3.345 -4.574 2.524 -3.685 -3.642 0.762 -4.111 1.791 0.595 -3.965 -0.998 -2.605 ML 61 59 6 64 6 1 1 55 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 56 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 56 G C - - MP 66 65 6 70 6 2 3 54 73 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -6.269 -3.853 -6.710 -0.901 -7.316 -5.257 -2.306 -6.925 -5.202 3.859 -5.460 -1.645 -2.667 -5.427 -4.460 -5.566 ML 67 65 6 70 6 1 1 53 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 54 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 55 g c - - MP 72 71 6 76 6 2 3 52 71 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -4.228 -3.525 -4.133 0.181 -3.521 -4.749 2.514 -4.022 -4.176 2.646 -4.564 -1.237 0.421 -4.251 -1.086 -2.981 ML 73 71 6 76 6 1 1 51 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 52 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 54 C G - - MP 78 77 6 82 6 2 2 50 69 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -6.347 -6.405 -5.701 -2.579 -4.142 -5.876 3.866 -5.149 -5.880 -2.500 -5.875 -4.456 -0.889 -6.293 -1.964 -4.684 ML 79 77 6 82 6 1 1 49 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 50 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 53 g c - - MP 84 83 6 88 6 2 2 48 67 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -3.551 -3.125 -3.561 0.505 -3.128 -4.293 1.235 -3.591 -3.638 2.444 -4.094 -0.987 1.775 -3.662 0.949 -2.500 ML 85 83 6 88 6 1 1 47 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 48 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 52 G C - - MP 90 89 6 94 6 2 2 46 65 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -4.983 -3.319 -5.014 1.123 -6.031 -5.095 -1.165 -5.453 -4.706 3.583 -5.036 -0.963 -1.439 -4.720 -3.200 -3.891 ML 91 89 6 94 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 45 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 46 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 51 g c - - MP 96 95 6 100 6 2 2 44 63 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -3.107 -2.798 -3.187 1.211 -2.908 -3.986 1.722 -3.313 -3.255 1.947 -3.756 0.197 1.836 -3.281 -0.635 -2.180 ML 97 95 6 100 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 44 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 50 u a - - MP 102 101 6 106 4 2 2 42 61 -7.808 -8.015 -0.029 -6.429 -1.811 -2.000 -2.004 1.322 -1.946 -0.766 1.548 -2.321 -0.615 0.814 -2.633 -0.628 1.655 -2.145 0.790 -1.248 ML 103 101 6 106 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 43 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 42 61 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 45 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - G - - - ML 108 107 6 110 3 1 1 39 58 -8.778 -0.012 -7.432 0.008 -2.558 1.368 -2.035 D 109 107 6 110 3 0 0 39 57 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - A - - - ML 111 110 3 113 3 1 1 38 56 -8.778 -0.012 -7.432 1.913 -3.960 -3.456 -3.656 D 112 110 3 113 3 0 0 37 56 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - G - - - ML 114 113 3 116 3 1 1 37 55 -8.778 -0.012 -7.432 -3.133 -4.534 1.916 -3.875 D 115 113 3 116 3 0 0 36 55 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - A - - - ML 117 116 3 119 3 1 1 36 54 -9.127 -0.011 -7.444 1.633 -2.633 -0.918 -2.259 D 118 116 3 119 3 0 0 35 53 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 37 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 49 - A - - MR 120 119 3 122 3 1 1 35 53 -9.127 -0.011 -7.444 1.649 -2.664 -0.995 -2.296 D 121 119 3 122 3 0 0 33 51 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 48 - G - - MR 123 122 3 125 3 1 1 34 52 -9.127 -0.011 -7.444 -3.133 -4.534 1.916 -3.875 D 124 122 3 125 3 0 0 32 50 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 47 - U - - MR 126 125 3 128 3 1 1 33 51 -9.127 -0.011 -7.444 -3.009 -2.762 -3.789 1.870 D 127 125 3 128 3 0 0 31 49 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 46 - G - - MR 129 128 3 131 3 1 1 32 50 -9.127 -0.011 -7.444 -3.133 -4.534 1.916 -3.875 D 130 128 3 131 3 0 0 30 48 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 45 - U - - MR 132 131 3 134 3 1 1 31 49 -9.127 -0.011 -7.444 -1.993 -0.940 -2.749 1.622 D 133 131 3 134 3 0 0 29 47 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 32 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 44 - C - - MR 135 134 3 137 3 1 1 30 48 -9.127 -0.011 -7.444 -3.604 1.894 -4.350 -2.710 D 136 134 3 137 3 0 0 28 46 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 43 - g - - MR 138 137 3 140 5 1 1 29 47 -7.825 -0.023 -7.641 -7.853 -8.745 0.183 -1.006 0.920 -1.076 D 139 137 3 140 5 0 0 28 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 26 42 G C - - MP 141 140 3 145 6 2 2 28 46 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -5.762 -3.664 -5.937 -0.600 -6.522 -0.338 -1.660 -6.402 -5.058 3.733 -5.288 -1.483 -2.002 -4.988 -3.740 -4.918 ML 142 140 3 145 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 27 41 C G - - MP 147 146 6 151 6 2 2 26 44 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -6.347 -6.405 -5.701 -2.579 -4.142 -5.876 3.866 -5.149 -5.880 -2.500 -5.875 -4.456 -0.889 -6.293 -1.964 -4.684 ML 148 146 6 151 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 28 40 g c - - MP 153 152 6 157 6 2 2 24 42 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -4.226 -3.540 -4.132 0.172 -3.503 -4.752 2.538 -4.011 -4.173 2.622 -4.562 -1.253 0.436 -4.256 -1.071 -2.978 ML 154 152 6 157 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 29 39 G C - - MP 159 158 6 163 6 2 2 22 40 -9.498 -9.438 -0.016 -8.214 -8.494 -8.889 -6.269 -3.853 -6.710 -0.901 -7.316 -5.257 -2.306 -6.925 -5.202 3.859 -5.460 -1.645 -2.667 -5.427 -4.460 -5.566 ML 160 158 6 163 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 18 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 22 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 30 38 C G - - MP 165 164 6 169 4 2 2 20 38 -3.457 -2.324 -0.520 -6.429 -6.347 -6.405 -5.701 -2.579 -4.142 -5.876 3.866 -5.149 -5.880 -2.500 -5.875 -4.456 -0.889 -6.293 -1.964 -4.684 ML 166 164 6 169 4 1 1 18 36 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 18 36 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 17 35 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 19 37 -2.441 -0.937 -1.873 -5.610 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 18 36 -1.790 -0.540 -5.432 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - u - - - ML 171 170 6 173 3 1 1 16 34 -8.778 -0.012 -7.432 -0.892 -1.466 0.487 0.764 D 172 170 6 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - u - - - ML 174 173 3 176 3 1 1 14 33 -8.778 -0.012 -7.432 -0.193 0.178 -0.773 0.495 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - a - - - ML 177 176 3 179 3 1 1 12 31 -8.778 -0.012 -7.432 0.226 0.056 -0.264 -0.062 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - c - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -0.145 0.217 -0.282 0.152 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Pyrobac-1 ACC RF01722 DESC Pyrobac-1 RNA LENG 60 MAXL 133 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 05:42:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01722/CM NSEQ 8 EFFN 7.105469 CKSUM 1155749080 STATS LOCAL MSV -8.1842 0.72017 STATS LOCAL VITERBI -8.6274 0.72017 STATS LOCAL FORWARD -3.8672 0.72017 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.73467 1.25983 0.99153 1.77885 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 0.00000 * 1 0.20236 3.24094 3.29609 2.23454 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 2 1.53584 0.82756 1.57386 1.96351 2 c - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 3 1.05024 1.83407 1.91236 1.07103 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.21618 4.62497 1.68955 1.46634 0.26236 1.09861 0.40547 4 1.59044 2.56169 0.67114 1.57087 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.02405 4.43285 4.43285 1.46634 0.26236 0.10095 2.34322 5 3.22689 0.26782 3.87866 1.74528 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 6 2.31553 0.20077 3.85414 2.78070 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 7 2.87341 3.53652 0.23586 2.08357 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 8 1.52989 1.40741 0.86411 2.14356 8 g - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 9 3.99647 5.01367 0.03672 4.50753 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 10 0.03639 4.63156 4.25741 4.43648 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 11 3.91296 0.28738 3.75983 1.57745 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.52518 0.91943 4.62497 0.71038 0.67621 1.09861 0.40547 12 1.90848 0.89233 1.05626 2.36194 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 13 3.51859 4.51931 0.05323 4.48258 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 14 2.82113 0.90691 0.80869 2.39413 16 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 15 4.68510 0.05288 4.62967 3.42587 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 16 2.48327 2.03624 0.90193 0.96698 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 17 1.94127 3.78133 0.21395 3.63825 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 18 1.81108 1.52239 1.11611 1.23518 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 19 1.60175 1.39612 1.65140 1.02410 21 u - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 20 1.39328 3.51252 0.38517 3.18006 22 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 21 0.03639 4.63156 4.25741 4.43648 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 22 3.99647 5.01367 0.03672 4.50753 24 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 23 0.21090 3.60151 2.04277 3.40537 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 24 3.43280 2.60502 0.12824 4.25760 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 25 4.73145 0.05182 4.65870 3.43553 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 26 2.83454 0.88832 0.82560 2.38668 28 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 27 3.52968 4.53798 0.05238 4.50813 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 28 4.70234 0.05248 4.64053 3.42951 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.11662 2.29988 4.62497 0.18524 1.77729 1.09861 0.40547 29 2.28743 2.68382 0.96942 0.79658 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 30 1.57222 1.22151 1.94980 1.03471 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 31 1.23567 1.30210 1.55638 1.48500 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 32 1.54322 1.18290 1.56268 1.30804 35 c - - _ 1.38629 1.38629 1.38629 1.38629 0.37778 1.18804 4.62497 0.31176 1.31736 1.09861 0.40547 33 3.70116 4.79443 0.04483 4.52182 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 34 4.61187 0.06450 4.42385 3.20543 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 35 2.64624 0.86061 0.84491 2.56937 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 36 3.71821 4.82593 0.04375 4.55537 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 37 4.43896 0.07392 4.17429 3.12227 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 38 1.28214 2.14141 0.66304 2.41037 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 39 4.38301 0.04532 4.82205 3.73931 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 40 3.15469 2.11268 3.67740 0.20931 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 41 3.99647 5.01367 0.03672 4.50753 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 42 3.96125 3.73219 4.50986 0.05549 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 43 3.99647 5.01367 0.03672 4.50753 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 44 0.19995 3.61982 2.10368 3.42840 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 45 1.26599 1.76855 1.14115 1.47837 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 46 1.35528 1.35562 1.39775 1.43891 51 a - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 47 3.84280 0.23860 3.60571 1.80991 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 48 1.42513 0.95165 1.32156 2.23774 53 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 49 3.69465 4.78251 0.04525 4.50915 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 50 2.65145 0.84368 0.86320 2.55728 55 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 51 4.58804 0.06511 4.41071 3.20117 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 52 2.59199 2.53709 0.84987 0.87093 57 g - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 53 2.83375 3.91753 0.10993 3.67235 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 54 0.72555 3.41016 0.82722 3.08690 59 a - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 55 2.39598 0.96245 0.83217 2.38751 60 g - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 56 2.01799 1.88995 0.95138 1.10929 61 g - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 57 2.97740 3.66553 0.19834 2.26924 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 58 2.77044 0.87722 3.39407 0.71774 63 u - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 59 2.07920 1.27708 0.91764 1.62628 64 g - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 60 2.04167 2.91267 3.37090 0.24654 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.00995 4.61512 * 1.46634 0.26236 0.00000 * //