INFERNAL1/a [1.1.5 | Sep 2023] NAME Bacillus-plasmid ACC RF01691 DESC Bacillus-plasmid RNA STATES 187 NODES 54 CLEN 61 W 123 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 14:13:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01691/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 31 EFFN 6.126587 CKSUM 3666427543 NULL 0.000 0.000 0.000 0.000 GA 31.00 TC 31.00 NC 30.90 EFP7GF -11.6996 0.71907 ECMLC 0.67674 -5.25503 3.06454 1600000 334452 0.003588 ECMGC 0.47052 -15.69677 -3.57758 1600000 119831 0.003338 ECMLI 0.64750 -4.30521 3.57559 1600000 197383 0.006080 ECMGI 0.50202 -11.86563 -1.06746 1600000 90429 0.004423 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 123 204 -7.931 -9.177 -0.038 -5.630 IL 1 1 2 1 4 1 12 124 206 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 124 206 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 80 - a - - MR 3 2 3 5 3 1 14 123 205 -9.379 -0.009 -7.697 0.599 -0.666 -0.466 0.177 D 4 2 3 5 3 0 8 121 202 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 13 123 205 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 79 - C - - MR 6 5 3 8 3 1 13 122 204 -9.379 -0.009 -7.697 -0.901 1.084 -2.281 0.188 D 7 5 3 8 3 0 8 120 201 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 12 122 204 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 78 - a - - MR 9 8 3 11 3 1 12 121 203 -9.379 -0.009 -7.697 0.822 -0.248 -0.244 -0.872 D 10 8 3 11 3 0 7 119 200 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 11 121 203 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 77 - u - - MR 12 11 3 14 3 1 11 120 202 -9.379 -0.009 -7.697 0.271 -0.151 -0.675 0.341 D 13 11 3 14 3 0 6 118 199 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 120 202 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 76 - c - - MR 15 14 3 17 3 1 10 119 201 -9.379 -0.009 -7.697 -0.032 0.724 -0.710 -0.399 D 16 14 3 17 3 0 6 117 199 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 10 119 201 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 75 - A - - MR 18 17 3 20 3 1 9 118 200 -9.379 -0.087 -4.141 1.583 -2.174 -1.714 -1.069 D 19 17 3 20 3 0 5 116 198 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 9 118 200 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 74 - c - - MR 21 20 3 23 3 1 10 117 199 -9.302 -0.010 -7.620 -0.150 0.564 -1.725 0.398 D 22 20 3 23 3 0 4 116 197 -7.300 -0.627 -1.530 IR 23 23 3 23 3 1 8 117 199 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 73 - U - - MR 24 23 3 26 3 1 10 116 198 -9.379 -0.009 -7.697 -0.558 -0.092 -1.923 1.083 D 25 23 3 26 3 0 3 114 196 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 7 116 198 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 72 - u - - MR 27 26 3 29 5 1 9 115 197 -8.069 -0.020 -7.884 -8.096 -8.988 -0.806 0.194 -1.475 0.945 D 28 26 3 29 5 0 2 113 195 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 6 115 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 1 71 u a - - MP 30 29 3 34 6 2 10 114 196 -9.648 -4.752 -0.068 -8.364 -8.644 -9.039 -3.392 -3.144 -3.463 0.928 -2.984 -4.266 1.501 -3.466 -3.492 2.018 -3.999 -1.070 2.174 -3.581 0.308 -2.396 ML 31 29 3 34 6 1 4 112 193 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 4 112 193 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 0 107 189 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 5 113 195 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 6 113 195 -2.798 -0.362 -6.309 -4.477 -5.583 0.000 0.000 0.000 0.000 [ MATP 11 ] 2 69 g c - - MP 36 35 6 40 6 2 10 112 194 -9.648 -9.588 -0.014 -8.364 -8.644 -9.039 -3.593 -3.049 -3.612 0.985 -3.304 -4.378 2.064 -3.698 -3.703 2.348 -4.165 -0.323 1.328 -3.673 -0.893 -2.520 ML 37 35 6 40 6 1 4 110 192 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 4 110 191 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 105 187 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 5 111 193 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 5 111 193 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 3 68 u a - - MP 42 41 6 46 6 2 10 110 192 -9.648 -9.588 -0.014 -8.364 -8.644 -9.039 -3.001 -2.987 -0.355 1.669 -2.816 -3.983 1.122 -3.250 -3.152 0.463 -3.694 -1.171 2.671 -3.313 -0.722 -2.214 ML 43 41 6 46 6 1 3 108 190 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 3 108 189 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 103 185 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 4 109 191 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 5 109 191 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 4 67 G C - - MP 48 47 6 52 6 2 9 108 190 -9.648 -9.588 -0.014 -8.364 -8.644 -9.039 -6.015 -3.849 -6.278 -0.746 -7.300 -5.378 -2.245 -6.651 -5.231 3.784 -5.510 -0.063 -2.520 -5.384 -4.360 -5.143 ML 49 47 6 52 6 1 3 106 188 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 3 106 187 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 101 183 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 4 107 189 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 4 107 189 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 5 66 U A - - MP 54 53 6 58 6 2 9 106 188 -9.648 -9.588 -0.014 -8.364 -8.644 -9.039 -7.118 -6.982 -6.630 -3.222 -5.155 -6.940 -0.860 -5.990 -6.607 -3.230 -6.875 -4.872 3.898 -7.074 -2.737 -4.767 ML 55 53 6 58 6 1 3 104 186 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 3 104 185 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 100 181 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 4 105 187 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 4 105 187 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 6 65 C G - - MP 60 59 6 64 6 2 8 104 186 -9.648 -9.588 -0.014 -8.364 -8.644 -9.039 -7.073 -7.193 -6.323 -3.353 -1.908 -6.421 3.899 -5.919 -6.643 -3.245 -6.428 -5.312 -1.623 -7.019 -2.727 -5.444 ML 61 59 6 64 6 1 3 102 184 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 3 102 183 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 98 180 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 4 103 185 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 4 103 185 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 7 64 A U - - MP 66 65 6 70 6 2 8 102 184 -9.648 -9.588 -0.014 -8.364 -8.644 -9.039 -7.129 -6.009 -3.050 3.941 -8.096 -9.082 -3.911 -5.497 -6.977 -2.479 -7.555 -3.250 -4.233 -8.105 -5.772 -5.092 ML 67 65 6 70 6 1 2 100 182 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 2 100 181 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 97 178 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 3 101 183 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 3 101 183 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 8 63 A U - - MP 72 71 6 76 6 2 6 100 182 -9.648 -9.588 -0.014 -8.364 -8.644 -9.039 -5.802 -4.530 -5.375 3.879 -7.031 -8.353 -2.640 -5.299 -5.560 -1.122 -6.182 -1.813 -2.993 -7.080 -4.550 -4.336 ML 73 71 6 76 6 1 2 99 180 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 2 98 180 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 96 177 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 3 99 181 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 3 99 181 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 9 62 C G - - MP 78 77 6 82 4 2 5 98 180 -8.080 -8.287 -0.024 -6.701 -5.337 -5.349 -4.940 -1.418 -3.483 -5.291 3.431 -4.319 -4.966 -1.270 -5.224 -3.292 1.792 -5.334 -1.134 -3.758 ML 79 77 6 82 4 1 1 97 179 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 1 96 178 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 0 95 177 -4.568 -4.250 -2.265 -0.520 IL 82 82 5 82 4 1 3 98 180 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 2 98 179 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 10 - G - - - ML 84 83 6 86 3 1 4 96 178 -9.039 -0.010 -7.693 -3.532 -4.973 1.937 -4.273 D 85 83 6 86 3 0 0 94 175 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 2 97 178 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 11 - G - - - ML 87 86 3 89 3 1 3 95 177 -4.561 -0.070 -7.693 -2.154 -4.160 1.862 -3.588 D 88 86 3 89 3 0 0 93 174 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 96 177 -1.702 -0.632 -4.402 0.000 0.000 0.000 0.000 [ MATL 21 ] 13 - U - - - ML 90 89 3 92 3 1 3 94 176 -9.039 -0.010 -7.693 -3.450 -3.147 -4.237 1.904 D 91 89 3 92 3 0 0 92 173 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 95 176 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 14 - A - - - ML 93 92 3 95 3 1 3 93 175 -9.039 -0.010 -7.693 1.937 -4.411 -3.883 -4.127 D 94 92 3 95 3 0 0 90 172 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 94 175 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - a - - - ML 96 95 3 98 3 1 2 92 174 -9.039 -0.010 -7.693 0.427 0.154 -0.089 -0.730 D 97 95 3 98 3 0 0 89 171 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 93 174 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - C - - - ML 99 98 3 101 3 1 2 91 173 -9.039 -0.010 -7.693 -1.897 1.443 -0.627 -1.457 D 100 98 3 101 3 0 0 88 169 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 92 173 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - G - - - ML 102 101 3 104 3 1 2 90 172 -9.039 -0.010 -7.693 -1.374 -0.122 1.242 -1.599 D 103 101 3 104 3 0 0 85 167 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 91 172 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - G - - - ML 105 104 3 107 3 1 1 89 171 -3.507 -0.539 -2.159 -2.644 -3.764 1.831 -2.268 D 106 104 3 107 3 0 0 80 162 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 99 181 -0.326 -2.387 -6.523 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - A - - - ML 108 107 3 110 3 1 1 65 113 -8.683 -0.141 -3.463 1.766 -2.903 -1.755 -2.572 D 109 107 3 110 3 0 0 62 111 -8.571 -4.084 -0.092 IL 110 110 3 110 3 1 1 66 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - C - - - ML 111 110 3 113 3 1 1 64 112 -1.254 -0.919 -4.267 -0.446 1.063 -0.964 -0.590 D 112 110 3 113 3 0 0 62 110 -8.886 -0.378 -2.130 IL 113 113 3 113 3 1 1 64 112 -2.739 -0.274 -5.439 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - G - - - ML 114 113 3 116 3 1 1 63 111 -8.928 -0.011 -7.582 -1.218 -3.427 1.741 -2.906 D 115 113 3 116 3 0 0 58 107 -7.468 -2.981 -0.205 IL 116 116 3 116 3 1 1 63 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - A - - - ML 117 116 3 119 3 1 1 62 110 -8.928 -0.011 -7.582 1.446 -0.933 -1.359 -1.465 D 118 116 3 119 3 0 0 57 105 -7.468 -2.981 -0.205 IL 119 119 3 119 3 1 1 62 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 34 - g - - - ML 120 119 3 122 3 1 1 61 109 -8.928 -0.011 -7.582 0.128 -0.021 0.139 -0.286 D 121 119 3 122 3 0 0 55 103 -7.468 -2.981 -0.205 IL 122 122 3 122 3 1 1 61 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 35 - C - - - ML 123 122 3 125 3 1 1 60 108 -2.068 -0.403 -7.582 -1.096 1.282 -0.744 -0.989 D 124 122 3 125 3 0 0 49 97 -7.468 -2.981 -0.205 IL 125 125 3 125 3 1 1 62 111 -0.550 -1.707 -6.568 0.000 0.000 0.000 0.000 [ MATL 33 ] 41 - g - - - ML 126 125 3 128 3 1 1 34 53 -8.928 -0.011 -7.582 0.389 -1.566 0.664 -0.380 D 127 125 3 128 3 0 0 32 51 -7.468 -2.981 -0.205 IL 128 128 3 128 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 42 - a - - - ML 129 128 3 131 3 1 1 33 51 -8.928 -0.056 -4.797 0.706 -1.254 -0.516 0.323 D 130 128 3 131 3 0 0 31 50 -7.468 -2.981 -0.205 IL 131 131 3 131 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - A - - - ML 132 131 3 134 3 1 1 32 50 -8.883 -0.011 -7.537 1.019 -0.908 -0.320 -0.645 D 133 131 3 134 3 0 0 30 49 -7.762 -1.008 -1.005 IL 134 134 3 134 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - G - - - ML 135 134 3 137 3 1 1 30 49 -8.977 -0.010 -7.631 -1.145 -1.830 1.527 -1.378 D 136 134 3 137 3 0 0 29 48 -7.040 -2.553 -0.283 IL 137 137 3 137 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - g - - - ML 138 137 3 140 3 1 1 29 48 -8.977 -0.010 -7.631 -0.327 -0.362 0.420 0.120 D 139 137 3 140 3 0 0 28 47 -7.040 -2.553 -0.283 IL 140 140 3 140 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - G - - - ML 141 140 3 143 3 1 1 28 47 -8.977 -0.010 -7.631 -1.292 -2.595 1.592 -1.279 D 142 140 3 143 3 0 0 27 46 -7.040 -2.553 -0.283 IL 143 143 3 143 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 47 - a - - - ML 144 143 3 146 3 1 1 27 46 -8.977 -0.058 -4.753 0.923 -0.588 -1.071 -0.056 D 145 143 3 146 3 0 0 26 45 -7.040 -0.686 -1.431 IL 146 146 3 146 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - G - - - ML 147 146 3 149 3 1 1 26 45 -8.994 -0.010 -7.648 -0.687 -1.820 1.501 -1.914 D 148 146 3 149 3 0 0 25 44 -6.850 -0.815 -1.242 IL 149 149 3 149 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - G - - - ML 150 149 3 152 3 1 1 25 44 -9.039 -0.293 -2.460 -0.742 -0.402 1.090 -0.952 D 151 149 3 152 3 0 0 24 43 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 50 - G - - - ML 153 152 3 155 3 1 1 24 43 -8.758 -0.012 -7.412 -3.102 -4.501 1.914 -3.844 D 154 152 3 155 3 0 0 22 41 -8.327 -3.840 -0.109 IL 155 155 3 155 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 51 - A - - - ML 156 155 3 158 3 1 1 23 42 -8.758 -0.012 -7.412 1.748 -2.894 -1.570 -2.567 D 157 155 3 158 3 0 0 21 40 -8.327 -3.840 -0.109 IL 158 158 3 158 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 52 - G - - - ML 159 158 3 161 3 1 1 22 40 -8.758 -0.012 -7.412 -1.874 -2.056 1.722 -2.405 D 160 158 3 161 3 0 0 21 39 -8.327 -0.243 -2.718 IL 161 161 3 161 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 53 - g - - - ML 162 161 3 164 3 1 1 21 39 -9.039 -0.010 -7.693 0.251 -0.068 0.365 -0.816 D 163 161 3 164 3 0 0 20 39 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 54 - A - - - ML 165 164 3 167 3 1 1 19 38 -9.039 -0.010 -7.693 1.295 -1.802 -1.933 -0.002 D 166 164 3 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 55 - U - - - ML 168 167 3 170 3 1 1 18 37 -3.507 -0.141 -7.693 -3.450 -3.147 -4.237 1.904 D 169 167 3 170 3 0 0 17 35 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.949 -0.512 -4.649 0.000 0.000 0.000 0.000 [ MATL 48 ] 57 - A - - - ML 171 170 3 173 3 1 1 17 35 -9.039 -0.010 -7.693 1.937 -4.411 -3.883 -4.127 D 172 170 3 173 3 0 0 17 35 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 58 - A - - - ML 174 173 3 176 3 1 1 15 34 -9.039 -0.010 -7.693 1.937 -4.411 -3.883 -4.127 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 59 - G - - - ML 177 176 3 179 3 1 1 14 32 -9.039 -0.010 -7.693 -3.532 -4.973 1.937 -4.273 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 60 - G - - - ML 180 179 3 182 3 1 1 12 31 -9.039 -0.010 -7.693 -3.532 -4.973 1.937 -4.273 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 61 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.937 -4.411 -3.883 -4.127 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Bacillus-plasmid ACC RF01691 DESC Bacillus-plasmid RNA LENG 61 MAXL 193 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 14:13:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01691/CM NSEQ 31 EFFN 8.624146 CKSUM 3666427543 STATS LOCAL MSV -8.0656 0.71907 STATS LOCAL VITERBI -8.5699 0.71907 STATS LOCAL FORWARD -3.8476 0.71907 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.20755 1.69220 1.18142 1.56010 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 0.00000 * 1 2.04561 1.74012 1.21543 0.91975 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 2 2.01436 1.26406 0.94779 1.62713 2 g - - < 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 3 1.23278 2.20949 2.45514 0.66766 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 4 3.43260 4.47907 0.05776 4.38381 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 5 5.08960 3.84420 5.07732 0.03439 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 6 4.98587 0.03788 4.95023 3.76139 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 7 0.02221 5.39820 4.41459 5.23192 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 8 0.05223 4.76818 3.43782 4.57985 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 9 3.89034 0.33618 3.72391 1.42326 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 10 4.20029 5.24417 0.02972 4.70896 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 11 3.01822 4.62401 0.07637 4.21145 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06100 2.96555 4.87421 0.27403 1.42841 1.09861 0.40547 12 4.20135 3.95012 4.75453 0.04379 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 13 0.02859 4.87434 4.49123 4.67340 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 14 1.07745 1.22603 1.42232 2.08001 15 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 15 3.18149 0.30830 1.81107 2.80837 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 16 2.66841 1.41830 0.45918 2.86976 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 17 3.55793 4.35177 0.09411 3.02761 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.42519 2.29253 1.40510 2.27570 0.10839 1.09861 0.40547 18 0.12618 3.72852 2.72073 3.55120 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12095 4.60280 2.26432 1.46634 0.26236 3.52953 0.02976 19 1.79937 0.55560 2.11473 1.96465 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.77821 0.73612 2.78385 0.04557 3.11124 0.20308 1.69398 20 2.31296 4.07688 0.15100 3.72030 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01677 4.78994 4.78994 1.46634 0.26236 2.60833 0.07651 21 0.33072 2.05467 2.44997 2.70067 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01677 4.78994 4.78994 1.46634 0.26236 2.60833 0.07651 22 1.31530 1.36097 1.25300 1.66312 34 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01677 4.78994 4.78994 1.46634 0.26236 2.60833 0.07651 23 2.37082 0.41156 1.91680 2.33402 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.32154 1.32181 4.78994 1.40831 0.28045 2.60833 0.07651 24 1.11040 2.66722 0.86567 1.71281 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01677 4.78994 4.78994 1.46634 0.26236 2.60833 0.07651 25 0.86375 2.40432 1.76104 1.15129 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05152 4.78994 3.17233 1.46634 0.26236 2.60833 0.07651 26 0.63242 2.06448 1.61011 1.95231 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01735 4.75577 4.75577 1.46634 0.26236 0.60425 0.79072 27 2.32577 2.74486 0.28452 2.45735 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82736 4.82736 1.46634 0.26236 2.19609 0.11792 28 1.69175 1.63310 1.04081 1.31934 45 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82736 4.82736 1.46634 0.26236 2.19609 0.11792 29 2.42547 3.42540 0.24661 2.32703 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82736 4.82736 1.46634 0.26236 2.19609 0.11792 30 0.70545 1.81736 2.20783 1.45362 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05225 4.82736 3.14880 1.46634 0.26236 0.25164 1.50294 31 1.94005 2.72244 0.30253 2.96336 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01593 4.84034 4.84034 1.46634 0.26236 0.31720 1.30262 32 2.05369 1.64186 0.56040 2.23365 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.23220 4.87421 1.61158 1.46634 0.26236 1.09861 0.40547 33 3.92228 4.93073 0.03966 4.43438 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01909 4.66110 4.66110 1.46634 0.26236 3.33642 0.03621 34 0.13971 3.72146 2.55894 3.54710 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01909 4.66110 4.66110 1.46634 0.26236 3.33642 0.03621 35 3.00146 2.87459 0.15070 3.38903 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01909 4.66110 4.66110 1.46634 0.26236 0.07378 2.64327 36 1.21957 1.39202 1.07737 2.15778 53 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 37 0.43318 2.91278 3.01637 1.39332 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 38 4.20135 3.95012 4.75453 0.04379 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.11502 2.29253 4.87421 0.14498 2.00279 1.09861 0.40547 39 0.02859 4.87434 4.49123 4.67340 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 40 0.02859 4.87434 4.49123 4.67340 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 41 4.20029 5.24417 0.02972 4.70896 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 42 4.20029 5.24417 0.02972 4.70896 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 43 0.02859 4.87434 4.49123 4.67340 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 44 1.50237 3.87839 0.31375 3.64916 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 45 4.77503 3.85836 4.58081 0.04060 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 46 5.45772 4.83161 4.55393 0.02303 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 47 3.40378 5.08450 0.04848 4.84242 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 48 0.04021 5.26547 3.65220 4.79016 66 A - - > 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 49 4.50625 0.12113 4.33708 2.40834 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 50 0.71325 2.66783 1.67143 1.37607 68 a - - > 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 51 1.78047 1.06504 1.18233 1.71388 69 c - - > 1.38629 1.38629 1.38629 1.38629 0.08397 2.61867 4.87421 0.19787 1.71744 1.09861 0.40547 52 1.13829 1.28594 1.38644 1.87547 71 a - - > 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 53 2.07481 1.21627 2.51842 0.69816 72 u - - : 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 54 1.84880 1.43855 2.94834 0.59262 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.07626 4.87421 2.72132 1.46634 0.26236 1.09861 0.40547 55 1.52443 0.93585 2.79066 1.11284 74 c - - : 1.38629 1.38629 1.38629 1.38629 0.01636 4.81431 4.81431 1.46634 0.26236 0.20888 1.66862 56 0.24631 3.14431 2.72084 2.21270 75 A - - : 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 57 1.43655 0.81607 1.89935 1.76947 76 c - - : 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 58 1.19496 1.48051 1.87795 1.14929 77 u - - : 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 59 0.77445 1.53150 1.54638 2.20898 78 a - - : 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 60 2.12655 0.57562 3.24514 1.27500 79 C - - : 1.38629 1.38629 1.38629 1.38629 0.01540 4.87421 4.87421 1.46634 0.26236 1.09861 0.40547 61 0.94626 1.88581 1.71725 1.27102 80 a - - : 1.38629 1.38629 1.38629 1.38629 0.00773 4.86654 * 1.46634 0.26236 0.00000 * //