INFERNAL1/a [1.1.5 | Sep 2023] NAME Acido-Lenti-1 ACC RF01687 DESC Acido-Lenti-1 RNA STATES 147 NODES 39 CLEN 46 W 57 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 23:03:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01687/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 87 EFFN 87.000000 CKSUM 2523491175 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 37.00 NC 36.90 EFP7GF -15.1511 0.72842 ECMLC 0.64722 -9.01330 1.13374 1600000 853830 0.001405 ECMGC 0.40778 -27.54086 -11.18512 1600000 315216 0.001269 ECMLI 0.62586 -8.87280 1.47495 1600000 779441 0.001540 ECMGI 0.41934 -24.72002 -9.64905 1600000 222205 0.001800 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 57 76 -11.400 -12.645 -0.003 -9.099 IL 1 1 2 1 4 1 19 59 78 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 60 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 46 - U - - MR 3 2 3 5 2 1 18 57 76 -13.161 -0.000 -2.770 -5.197 -1.826 1.825 D 4 2 3 5 2 0 17 57 75 -4.432 -0.068 IR 5 5 3 5 2 1 18 59 77 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 2 ] - - - - - - B 6 5 3 7 69 0 17 56 75 [ BEGL 3 ] - - - - - - S 7 6 1 8 4 0 0 30 49 -0.003 -10.556 -9.964 -10.604 [ MATP 4 ] 1 20 C G - - MP 8 7 1 12 6 2 2 30 49 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -9.432 -9.710 -1.396 -5.947 -7.101 -8.894 3.903 -8.016 -8.853 -5.919 -2.318 -8.108 -3.833 -9.267 -1.603 -7.655 ML 9 7 1 12 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 10 7 1 12 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 11 7 1 12 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 12 12 5 12 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 13 13 6 13 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 19 C G - - MP 14 13 6 18 6 2 2 28 47 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -9.322 -9.398 -8.709 -1.044 -7.122 -8.918 3.795 -8.004 -8.781 -0.013 -8.938 -7.487 -3.814 -9.235 -0.906 -7.591 ML 15 13 6 18 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 16 13 6 18 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 17 13 6 18 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 18 18 5 18 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 19 19 6 19 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 18 U A - - MP 20 19 6 24 6 2 2 26 45 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -7.007 -6.723 -6.981 -1.080 -2.647 -7.783 2.393 -6.487 -6.850 -0.037 -7.345 -4.303 3.137 -3.157 -3.294 -5.573 ML 21 19 6 24 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 6 24 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 6 24 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 17 A U - - MP 26 25 6 30 6 2 2 24 43 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -6.948 1.742 -6.820 3.011 -7.899 -7.560 -0.855 -7.387 -7.116 1.007 -7.441 -0.797 0.258 -2.627 -5.037 -5.736 ML 27 25 6 30 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 16 G C - - MP 32 31 6 36 6 2 2 22 41 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -6.544 -2.291 -6.366 0.079 -7.471 -6.954 1.170 -7.044 -6.786 3.463 -7.036 -1.722 0.026 -6.220 -4.553 -5.328 ML 33 31 6 36 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 15 C G - - MP 38 37 6 42 6 2 2 20 39 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -7.507 -7.240 -7.404 -3.113 -6.180 -8.093 3.122 -6.885 -7.309 2.344 -7.750 -1.794 0.242 -7.638 -0.854 -6.040 ML 39 37 6 42 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 14 g c - - MP 44 43 6 48 6 2 2 18 37 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -6.631 -5.290 -6.458 1.949 -7.450 -7.076 -0.837 -7.085 -6.859 2.852 -7.122 -2.920 1.853 -6.338 -4.575 -1.067 ML 45 43 6 48 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 13 C G - - MP 50 49 6 54 4 2 2 16 35 -11.601 -11.808 -0.002 -10.222 -8.008 -7.832 -7.804 0.108 -2.892 -8.364 3.647 -7.230 -7.743 -0.760 -8.122 -5.518 0.624 -8.097 -4.031 -6.488 ML 51 49 6 54 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 53 49 6 54 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 54 54 5 54 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 55 55 6 55 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - U - - - ML 56 55 6 58 3 1 1 13 31 -12.515 -0.001 -11.169 -5.913 -5.727 -2.937 1.939 D 57 55 6 58 3 0 0 16 34 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - g - - - ML 59 58 3 61 3 1 1 12 30 -12.515 -0.001 -11.169 -2.568 0.431 0.460 0.147 D 60 58 3 61 3 0 0 15 33 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - A - - - ML 62 61 3 64 3 1 1 10 28 -12.515 -0.031 -5.588 1.715 -1.462 -2.520 -2.468 D 63 61 3 64 3 0 0 13 32 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - C - - - ML 65 64 3 67 2 1 1 1 1 * 0.000 -0.153 1.625 -7.827 -6.527 D 66 64 3 67 2 0 0 0 0 * 0.000 IL 67 67 3 67 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 16 ] - - - - - - E 68 67 3 -1 0 0 0 0 0 [ BEGR 17 ] - - - - - - S 69 6 1 70 3 0 0 36 55 -12.515 -0.001 -11.169 IL 70 70 2 70 3 1 1 42 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 21 - C - - - ML 71 70 2 73 3 1 1 36 54 -12.515 -0.001 -11.169 -7.390 1.969 -7.763 -3.739 D 72 70 2 73 3 0 0 37 55 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 41 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 22 - U - - - ML 74 73 3 76 3 1 1 35 53 -12.515 -0.001 -11.169 -6.948 -3.489 -7.722 1.963 D 75 73 3 76 3 0 0 36 54 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 40 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 23 - A - - - ML 77 76 3 79 3 1 1 34 52 -12.515 -0.001 -11.169 1.447 -3.103 -0.220 -1.743 D 78 76 3 79 3 0 0 35 53 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 39 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 24 - a - - - ML 80 79 3 82 3 1 1 33 51 -12.515 -0.001 -11.169 0.999 -0.878 -2.928 0.407 D 81 79 3 82 3 0 0 34 52 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 25 - u - - - ML 83 82 3 85 3 1 1 32 50 -12.515 -0.001 -11.169 -0.400 -0.872 -0.300 0.914 D 84 82 3 85 3 0 0 33 51 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - u - - - ML 86 85 3 88 3 1 1 31 49 -12.515 -0.001 -11.169 0.267 -1.006 -0.755 0.771 D 87 85 3 88 3 0 0 32 50 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - U - - - ML 89 88 3 91 3 1 1 30 48 -12.515 -0.001 -11.169 -0.996 -0.804 -3.243 1.496 D 90 88 3 91 3 0 0 31 49 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - A - - - ML 92 91 3 94 3 1 1 29 47 -12.515 -0.001 -11.169 1.554 -0.553 -1.862 -3.219 D 93 91 3 94 3 0 0 30 48 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 34 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - U - - - ML 95 94 3 97 3 1 1 27 46 -12.515 -0.001 -11.169 -1.518 -2.224 -1.400 1.612 D 96 94 3 97 3 0 0 29 47 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 33 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 30 - g - - - ML 98 97 3 100 3 1 1 26 45 -12.515 -0.001 -11.169 -0.283 -2.567 0.959 0.091 D 99 97 3 100 3 0 0 28 46 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 32 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 31 - c - - - ML 101 100 3 103 3 1 1 25 44 -12.515 -0.001 -11.169 -0.795 0.414 -0.070 0.188 D 102 100 3 103 3 0 0 26 45 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 31 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - C - - - ML 104 103 3 106 5 1 1 24 43 -11.456 -0.002 -11.272 -11.484 -12.376 -7.344 1.920 -7.753 -2.288 D 105 103 3 106 5 0 0 23 41 -4.959 -0.803 -4.221 -2.596 -2.508 IL 106 106 3 106 5 1 1 25 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 33 45 G C - - MP 107 106 3 111 6 2 2 23 42 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -10.069 -7.026 -11.451 0.302 -11.847 -8.304 -6.306 -11.245 -8.371 3.876 -8.603 -4.893 -6.625 -8.725 -8.685 -10.220 ML 108 106 3 111 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 3 111 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 3 111 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 44 U A - - MP 113 112 6 117 6 2 2 21 40 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -2.354 -6.960 -7.204 -0.922 -6.029 -7.977 1.664 -6.702 -7.080 0.592 -7.558 -4.543 3.377 -7.429 -3.521 -5.811 ML 114 112 6 117 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 43 g c - - MP 119 118 6 123 6 2 2 19 38 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -6.463 -1.943 -6.424 0.629 -2.702 -7.167 2.599 -6.410 -3.319 2.681 -3.117 -3.420 0.125 -6.465 -3.451 -5.226 ML 120 118 6 123 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 36 42 C G - - MP 125 124 6 129 6 2 2 17 36 -12.461 -12.400 -0.002 -11.176 -11.456 -11.851 -8.950 -8.138 -8.687 -1.222 -7.702 -9.459 3.614 -8.214 -8.548 1.678 -8.914 -5.600 -4.321 -9.459 -5.380 -7.460 ML 126 124 6 129 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 19 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 19 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 18 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 37 41 C G - - MP 131 130 6 135 4 2 2 15 34 -11.601 -11.808 -0.002 -10.222 -9.420 -9.695 -8.743 -5.925 1.480 -8.891 3.137 -8.010 -8.845 -5.892 -8.968 -8.082 2.016 -9.257 -1.690 -7.646 ML 132 130 6 135 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 134 130 6 135 4 0 0 18 36 -4.568 -4.250 -2.265 -0.520 IL 135 135 5 135 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 136 136 6 136 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - U - - - ML 137 136 6 139 3 1 1 12 30 -12.515 -0.001 -11.169 -3.827 -2.997 -1.957 1.826 D 138 136 6 139 3 0 0 15 33 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - U - - - ML 140 139 3 142 3 1 1 10 28 -12.515 -0.001 -11.169 -0.919 -0.723 -1.153 1.273 D 141 139 3 142 3 0 0 13 32 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - C - - - ML 143 142 3 145 2 1 1 1 1 * 0.000 -3.436 1.785 -6.451 -1.155 D 144 142 3 145 2 0 0 0 0 * 0.000 IL 145 145 3 145 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 146 145 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Acido-Lenti-1 ACC RF01687 DESC Acido-Lenti-1 RNA LENG 46 MAXL 99 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 23:03:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01687/CM NSEQ 87 EFFN 80.540314 CKSUM 2523491175 STATS LOCAL MSV -7.4918 0.72842 STATS LOCAL VITERBI -7.7959 0.72842 STATS LOCAL FORWARD -3.6231 0.72842 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.74120 1.13804 1.39240 1.36349 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 0.00000 * 1 3.68121 0.06765 4.25676 3.64768 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 2 3.47365 0.14242 2.76838 3.24478 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 3 3.43266 1.08137 2.71570 0.57553 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 4 0.34343 3.31393 1.79699 2.42476 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 5 2.50471 1.95393 0.34646 2.66790 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 6 4.63533 0.60887 1.09415 2.19366 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 7 1.41029 3.29235 0.77453 1.35542 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 8 2.67679 0.23699 3.22579 2.27794 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 9 5.38886 5.26248 3.41903 0.04342 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 10 3.13496 1.08903 1.07008 1.28382 10 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 11 0.19866 2.39901 3.12836 3.08838 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02278 6.79347 3.84431 1.46634 0.26236 1.09861 0.40547 12 1.49599 0.25911 6.70847 5.80450 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00229 6.77298 6.77298 1.46634 0.26236 0.09964 2.35564 13 2.24094 3.26093 0.24246 2.65082 13 G - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 14 1.48619 0.78967 3.22161 1.27339 14 c - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 15 2.56241 1.14902 0.54859 3.56941 15 G - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 16 2.72197 0.35555 1.93451 2.41946 16 C - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 17 2.57135 1.06065 3.25845 0.61824 17 U - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 18 0.58292 2.66442 1.09084 3.31979 18 A - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 19 5.13093 2.77355 0.10533 3.45396 19 G - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 20 5.14918 6.40684 0.00972 6.11132 20 G - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 21 6.42853 0.02194 6.68709 3.97186 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 22 6.09469 3.79532 6.62924 0.02640 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 23 0.38431 3.52039 1.54016 2.58831 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 24 0.69595 1.99217 3.38645 1.10512 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 25 1.65920 1.98742 1.59521 0.75546 25 u - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 26 1.20131 2.07949 1.90760 0.85386 26 u - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 27 2.07533 1.94305 3.61776 0.35044 27 U - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 28 0.30973 1.77157 2.67525 3.59723 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 29 2.43473 2.91980 2.35708 0.26953 29 U - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 30 1.58091 3.14742 0.72328 1.32392 30 g - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 31 1.93015 1.10172 1.43700 1.25550 31 c - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 32 6.39127 0.05563 6.67661 2.97251 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 33 2.55614 6.71576 0.08340 6.72094 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 34 3.05606 1.60441 2.31811 0.42548 34 U - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 35 2.16160 0.94731 0.86969 2.55113 35 g - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 36 3.58250 0.26814 1.60142 5.15237 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 37 6.32168 0.32354 6.26276 1.29933 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 38 4.01694 3.45197 2.74423 0.12103 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 39 2.01672 1.88581 2.18301 0.50667 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 40 3.75531 0.14948 5.78197 2.18598 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 41 0.85113 6.39352 0.56360 6.10191 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 42 5.43471 1.60785 0.26640 3.53391 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 43 2.45392 0.87520 0.93888 2.24245 43 c - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 44 0.41603 2.34499 1.58070 3.25289 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 45 6.75267 0.08539 6.60983 2.53411 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 46 3.29899 4.91701 2.65391 0.12174 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.00112 6.79234 * 1.46634 0.26236 0.00000 * //