INFERNAL1/a [1.1.5 | Sep 2023] NAME mascRNA-menRNA ACC RF01684 DESC MALAT1-associated small cytoplasmic RNA/MEN beta RNA STATES 182 NODES 45 CLEN 56 W 86 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 10:32:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01684/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 53 EFFN 4.357361 CKSUM 3030777057 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.00 NC 41.90 EFP7GF -12.3456 0.71931 ECMLC 0.73027 -4.86667 2.93514 1600000 357716 0.003355 ECMGC 0.38621 -17.93382 -3.29683 1600000 114061 0.003507 ECMLI 0.60798 -5.34249 3.76133 1600000 304062 0.003947 ECMGI 0.40026 -14.08844 -0.78205 1600000 82252 0.004863 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 86 130 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 IL 1 1 2 1 6 1 18 88 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 18 88 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 61 G C - - MP 3 2 3 7 6 2 22 87 130 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -4.454 -2.981 -4.382 0.871 -5.249 -2.446 -0.480 -4.981 -4.432 3.482 -4.702 -0.316 -0.756 -4.074 -2.481 -3.363 ML 4 2 3 7 6 1 16 85 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 16 85 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 12 82 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 17 86 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 18 86 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 60 a u - - MP 9 8 6 13 6 2 20 85 128 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -3.526 -2.655 -3.540 2.312 -3.962 -4.379 0.335 -3.909 -3.676 2.242 -4.118 1.141 0.678 -3.620 -1.570 -2.514 ML 10 8 6 13 6 1 15 83 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 15 83 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 11 81 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 17 84 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 17 84 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 59 c g - - MP 15 14 6 19 6 2 19 83 126 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -2.951 -3.040 -3.055 0.351 -1.305 -2.453 2.509 -3.077 -3.076 0.399 -3.598 -1.317 1.476 -3.230 1.544 -2.113 ML 16 14 6 19 6 1 15 82 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 15 82 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 11 80 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 16 82 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 16 82 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 58 g c - - MP 21 20 6 25 6 2 17 81 124 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -2.060 -1.623 -2.249 1.286 -2.331 -2.322 1.020 -1.700 -0.967 2.232 -2.793 0.530 0.861 -2.328 -0.480 -0.937 ML 22 20 6 25 6 1 14 81 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 14 81 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 11 80 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 15 80 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 15 80 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 57 C G - - MP 27 26 6 31 6 2 15 78 122 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -4.583 -4.574 -4.356 -0.741 -3.105 -4.835 3.450 -1.926 -4.369 -0.583 -4.704 -2.545 0.535 -4.675 0.488 -3.206 ML 28 26 6 31 6 1 13 80 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 13 81 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 10 80 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 14 79 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 14 79 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 56 u g - - MP 33 32 6 37 6 2 13 76 120 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -2.994 -3.097 -3.085 0.227 -2.574 -3.842 1.708 -3.117 -3.121 0.289 -3.629 -1.430 1.822 -0.494 2.199 -2.171 ML 34 32 6 37 6 1 12 80 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 12 81 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 10 80 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 12 78 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 12 78 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 55 G C - - MP 39 38 6 43 3 2 11 74 118 -6.180 -16.649 -0.020 -4.285 -2.916 -4.235 0.720 -5.132 -4.676 -0.431 -4.758 -1.968 3.379 -4.628 0.676 -0.693 -4.085 -2.412 -3.178 ML 40 38 6 43 3 1 11 81 124 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 3 1 11 81 124 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 D 42 38 6 43 3 0 10 80 123 -1.585 -1.585 -1.585 IL 43 43 5 43 3 1 11 82 126 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 44 44 6 44 2 1 11 62 83 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 8 ] - - - - - - B 45 44 6 100 46 0 9 60 81 [ BEGR 31 ] - - - - - - S 46 45 1 47 5 0 0 33 54 -7.734 -0.025 -7.549 -7.761 -8.653 IL 47 47 2 47 5 1 1 34 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 54 C G - - MP 48 47 2 52 6 2 2 33 54 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -5.049 -5.077 -4.658 -1.190 -3.222 -5.005 3.565 -4.063 -4.697 -1.035 -4.946 -3.065 0.759 -5.051 -0.094 -3.501 ML 49 47 2 52 6 1 1 31 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 2 52 6 1 1 31 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 2 52 6 0 0 29 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 32 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 53 g c - - MP 54 53 6 58 6 2 2 31 52 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -3.394 -2.507 -3.463 1.763 -3.972 -4.229 0.148 -3.851 -0.612 2.504 -3.955 1.601 -0.089 -3.528 -1.667 -2.461 ML 55 53 6 58 6 1 1 29 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 29 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 27 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 30 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 52 G C - - MP 60 59 6 64 6 2 2 29 50 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -4.790 -3.179 -4.781 0.205 -5.707 -4.829 -0.886 -5.307 -4.598 3.585 -2.853 0.212 -1.159 -4.428 -2.907 -3.717 ML 61 59 6 64 6 1 1 28 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 27 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 25 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 28 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 39 51 G C - - MP 66 65 6 70 6 2 2 27 48 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -5.407 -3.485 -5.545 -0.252 -6.540 -5.107 -1.599 -5.955 -4.867 3.716 -5.167 0.014 -1.874 -4.951 -3.671 -4.421 ML 67 65 6 70 6 1 1 26 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 26 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 24 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 27 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 26 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 40 50 G C - - MP 72 71 6 76 4 2 2 25 46 -7.705 -7.912 -0.031 -6.326 -6.094 -3.763 -6.471 -0.770 -7.086 -5.192 -2.119 -6.705 -5.110 3.844 -5.375 -1.543 -2.481 -5.321 -4.255 -5.330 ML 73 71 6 76 4 1 1 25 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 27 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - U - - - ML 78 77 6 80 3 1 1 23 43 -3.922 -0.108 -7.332 -2.833 -2.610 -3.609 1.854 D 79 77 6 80 3 0 0 20 41 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 25 45 -1.282 -0.861 -4.711 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - U - - - ML 81 80 3 83 3 1 1 18 37 -8.678 -0.013 -7.332 -2.833 -2.610 -3.609 1.854 D 82 80 3 83 3 0 0 18 37 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - C - - - ML 84 83 3 86 3 1 1 17 36 -8.678 -0.013 -7.332 -1.341 1.636 -2.914 -1.452 D 85 83 3 86 3 0 0 17 35 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - a - - - ML 87 86 3 89 3 1 1 16 34 -8.678 -0.013 -7.332 0.804 -1.040 0.311 -0.924 D 88 86 3 89 3 0 0 16 34 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - A - - - ML 90 89 3 92 3 1 1 14 33 -8.678 -0.013 -7.332 1.901 -3.780 -3.287 -3.462 D 91 89 3 92 3 0 0 15 33 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 48 - g - - - ML 93 92 3 95 3 1 1 13 31 -8.678 -0.013 -7.332 0.068 -0.830 0.713 -0.415 D 94 92 3 95 3 0 0 13 32 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 49 - U - - - ML 96 95 3 98 2 1 1 1 1 * 0.000 -0.909 -1.098 -2.098 1.468 D 97 95 3 98 2 0 0 0 0 * 0.000 IL 98 98 3 98 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 99 98 3 -1 0 0 0 0 0 [ BEGL 9 ] - - - - - - S 100 45 1 101 1 0 0 40 59 0.000 [ BIF 10 ] - - - - - - B 101 100 1 102 134 0 0 40 59 [ BEGL 11 ] - - - - - - S 102 101 1 103 4 0 0 24 42 -0.033 -7.265 -6.672 -7.312 [ MATP 12 ] 8 18 G C - - MP 103 102 1 107 6 2 2 24 42 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -6.094 -3.763 -6.471 -0.770 -7.086 -5.192 -2.119 -6.705 -5.110 3.844 -5.375 -1.543 -2.481 -5.321 -4.255 -5.330 ML 104 102 1 107 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 105 102 1 107 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 106 102 1 107 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 107 107 5 107 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 108 108 6 108 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 17 U A - - MP 109 108 6 113 6 2 2 22 40 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -5.177 -5.200 -4.832 -1.377 -3.455 -5.209 1.065 -4.274 -4.862 -1.223 -5.142 -3.217 3.566 -5.200 -0.496 -3.611 ML 110 108 6 113 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 111 108 6 113 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 112 108 6 113 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 113 113 5 113 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 114 114 6 114 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 16 G C - - MP 115 114 6 119 4 2 2 20 38 -7.705 -7.912 -0.031 -6.326 -4.457 -3.022 -4.412 0.389 -5.182 -4.584 -0.511 -4.978 -4.413 3.555 -2.410 -0.755 -0.791 -2.067 -2.493 -3.403 ML 116 114 6 119 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 117 114 6 119 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 118 114 6 119 4 0 0 20 38 -4.568 -4.250 -2.265 -0.520 IL 119 119 5 119 4 1 1 23 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 120 120 6 120 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 121 120 6 123 3 1 1 16 34 -8.678 -0.013 -7.332 -1.892 -3.255 1.779 -2.364 D 122 120 6 123 3 0 0 16 35 -6.174 -1.687 -0.566 IL 123 123 3 123 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - U - - - ML 124 123 3 126 3 1 1 14 33 -1.590 -0.596 -7.332 -1.389 -1.291 -1.979 1.563 D 125 123 3 126 3 0 0 13 32 -6.174 -1.687 -0.566 IL 126 126 3 126 3 1 1 14 32 -2.615 -0.301 -5.316 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - G - - - ML 127 126 3 129 3 1 1 13 31 -8.678 -0.013 -7.332 -2.453 -3.639 1.837 -2.613 D 128 126 3 129 3 0 0 13 32 -6.174 -1.687 -0.566 IL 129 129 3 129 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - G - - - ML 130 129 3 132 2 1 1 1 1 * 0.000 -2.970 -4.355 1.906 -3.709 D 131 129 3 132 2 0 0 0 0 * 0.000 IL 132 132 3 132 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 19 ] - - - - - - E 133 132 3 -1 0 0 0 0 0 [ BEGR 20 ] - - - - - - S 134 101 1 135 5 0 0 28 46 -7.734 -0.059 -7.549 -7.761 -5.313 IL 135 135 2 135 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 35 u a - - MP 136 135 2 140 6 2 2 28 46 -9.425 -9.365 -0.017 -8.141 -8.421 -8.816 -2.939 -0.952 -3.034 0.847 -2.935 -3.852 1.132 -3.256 -3.112 2.124 -3.618 -0.267 2.203 -3.137 -0.747 -2.084 ML 137 135 2 140 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 2 140 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 2 140 6 0 0 25 43 -9.407 -8.105 -1.802 -4.584 -4.602 -0.677 IL 140 140 5 140 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 34 C G - - MP 142 141 6 146 6 2 2 26 44 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -5.046 -5.095 -4.636 -1.229 -3.186 -4.967 3.529 -4.030 -4.679 -1.089 -4.922 -3.116 0.318 -5.038 0.768 -3.487 ML 143 141 6 146 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 145 141 6 146 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 33 C G - - MP 148 147 6 152 6 2 2 24 42 -9.444 -9.384 -0.017 -8.160 -8.440 -8.835 -6.787 -6.754 -3.868 -2.948 -4.823 -6.432 3.909 -5.995 -6.532 -2.792 -6.362 -4.720 -1.632 -6.865 -2.874 -5.363 ML 149 147 6 152 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 151 147 6 152 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 32 u a - - MP 154 153 6 158 6 2 2 22 40 -9.444 -9.384 -0.032 -8.160 -8.440 -6.283 -4.162 -4.124 -4.055 -0.307 -2.965 -4.654 2.349 -3.679 -4.044 -0.141 -4.452 -2.069 2.642 -4.315 1.000 -2.902 ML 155 153 6 158 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 157 153 6 158 6 0 0 18 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 158 158 5 158 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 159 159 6 159 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 31 G C - - MP 160 159 6 164 6 2 2 20 38 -9.429 -9.368 -0.076 -6.589 -5.547 -5.893 -3.908 -2.662 -3.811 1.700 -4.667 -4.469 0.041 -4.348 -4.063 3.076 -4.396 0.306 0.047 -3.745 -1.945 -2.756 ML 161 159 6 164 6 1 1 18 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 162 159 6 164 6 1 1 18 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 163 159 6 164 6 0 0 16 35 -9.345 -8.043 -3.840 -4.522 -4.540 -0.254 IL 164 164 5 164 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 165 165 6 165 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 30 G C - - MP 166 165 6 170 4 2 2 18 36 -1.574 -7.762 -0.631 -6.176 -3.296 -2.401 -3.261 1.341 -3.806 -2.598 0.470 -3.784 -2.374 3.047 -3.916 -0.183 0.220 -3.213 -1.392 -1.661 ML 167 165 6 170 4 1 1 16 34 -3.875 -4.058 -0.460 -2.787 0.285 -0.598 0.262 -0.117 MR 168 165 6 170 4 1 1 17 35 -1.930 -4.225 -2.092 -1.153 -0.015 0.396 -0.711 0.115 D 169 165 6 170 4 0 0 15 34 -3.139 -2.817 -1.835 -1.107 IL 170 170 5 170 4 1 1 17 35 -3.518 -0.414 -2.711 -6.687 0.000 0.000 0.000 0.000 IR 171 171 6 171 3 1 1 16 34 -2.630 -0.343 -4.321 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - u - - - ML 172 171 6 174 3 1 1 14 33 -8.656 -0.013 -7.310 0.434 -0.548 -0.740 0.451 D 173 171 6 174 3 0 0 14 33 -6.471 -1.984 -0.442 IL 174 174 3 174 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - u - - - ML 175 174 3 177 3 1 1 13 31 -8.656 -0.013 -7.310 -0.671 0.272 -1.217 0.794 D 176 174 3 177 3 0 0 13 32 -6.471 -1.189 -0.862 IL 177 177 3 177 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - U - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 -0.821 -0.617 -1.037 1.198 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mascRNA-menRNA ACC RF01684 DESC MALAT1-associated small cytoplasmic RNA/MEN beta RNA LENG 56 MAXL 127 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 10:32:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01684/CM NSEQ 53 EFFN 8.135681 CKSUM 3030777057 STATS LOCAL MSV -7.7184 0.71931 STATS LOCAL VITERBI -8.4815 0.71931 STATS LOCAL FORWARD -3.2088 0.71931 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.95756 1.26686 1.04174 1.49502 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 0.00000 * 1 2.19600 3.09008 0.21497 3.30521 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 2 0.94213 2.96577 0.80651 2.18684 2 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 3 2.81541 0.78549 2.64359 0.88402 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 4 1.67606 1.98900 0.65517 1.85341 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 5 3.84471 0.21549 3.67433 1.91667 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 6 3.26619 1.73433 3.11127 0.30004 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 7 2.45862 3.46958 0.16608 3.31479 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 8 3.66064 4.70371 0.04493 4.69269 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 9 4.22626 2.34867 4.09477 0.13555 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 10 3.02611 3.82290 0.11883 3.17783 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 11 3.06639 4.15281 0.10465 3.29534 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 12 2.77710 2.56447 3.08716 0.20433 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.48803 0.97681 4.64006 0.05053 3.01032 1.09861 0.40547 13 3.71683 4.57272 0.06771 3.47919 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 14 4.13981 5.17537 0.03165 4.64907 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 15 3.91684 0.13390 3.21225 2.73107 16 C - - > 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 16 0.17779 4.22536 2.04706 3.95563 17 A - - > 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 17 4.69650 0.05796 4.54234 3.30944 18 C - - > 1.38629 1.38629 1.38629 1.38629 0.04848 4.64006 3.27900 1.46634 0.26236 1.09861 0.40547 18 1.96992 2.27349 1.05045 0.89698 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61165 4.61165 1.46634 0.26236 0.41395 1.08186 19 4.08489 0.21901 3.95245 1.82850 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 20 5.01725 0.02116 5.48196 4.59023 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 21 3.39011 1.13097 3.17513 0.50786 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04287 4.64006 3.43235 1.46634 0.26236 1.09861 0.40547 22 1.47183 2.90186 0.45294 2.52802 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03795 4.61715 3.59863 1.46634 0.26236 1.67632 0.20710 23 1.77204 2.51417 0.42412 2.35662 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.44096 1.05980 4.59951 0.05707 2.89196 0.75448 0.63536 24 1.05077 1.83299 1.96475 1.04924 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01985 4.62283 4.62283 1.46634 0.26236 1.56215 0.23532 25 2.10162 1.10983 2.38759 0.78466 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01985 4.62283 4.62283 1.46634 0.26236 0.54364 0.86901 26 2.26448 1.90694 2.18963 0.45315 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.52125 1.02231 3.06919 0.05285 2.96665 1.09861 0.40547 27 2.56550 0.48505 2.45037 1.50872 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.02026 4.60257 4.60257 1.46634 0.26236 1.01632 0.44930 28 2.73362 0.56802 2.71003 1.19788 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.01996 4.61715 4.61715 1.46634 0.26236 0.46860 0.98317 29 0.76988 3.34387 0.77890 3.15309 32 a - - > 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 30 4.73967 5.64073 0.01681 5.43125 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 31 2.97053 4.10041 0.09352 3.84274 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.04848 4.64006 3.27900 1.46634 0.26236 1.09861 0.40547 32 0.95521 1.06927 2.09549 1.90382 35 a - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61165 4.61165 1.46634 0.26236 0.41395 1.08186 33 4.03086 0.19765 3.86190 1.96214 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 34 1.40840 3.19783 0.40738 3.01135 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 35 3.05012 3.94235 0.09284 3.82090 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 36 3.36094 4.39992 0.06245 4.30097 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 37 3.64492 4.67646 0.04599 4.65483 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 38 4.12886 3.88400 4.68058 0.04703 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.09673 2.49450 4.64006 0.77558 0.61700 1.09861 0.40547 39 4.12886 3.88400 4.68058 0.04703 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 40 2.55664 0.15244 4.10875 3.04916 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 41 0.75436 2.24164 1.08263 2.46865 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 42 0.03072 4.80155 4.42107 4.60330 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 43 1.39214 2.04146 0.76993 1.84153 48 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 44 2.24047 2.38711 3.35899 0.26536 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 45 4.74175 0.05693 4.56787 3.31759 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 46 4.45113 0.13056 4.25889 2.33722 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 47 4.03177 0.18524 3.43322 2.12802 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 48 2.36587 1.01087 2.99873 0.70851 53 u - - > 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 49 2.41372 4.01505 0.13974 3.77692 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 50 3.05254 0.32632 3.28461 1.64126 55 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 51 1.39960 2.28541 0.50379 3.05050 56 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 52 2.85288 3.83006 0.13174 3.12259 57 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 53 1.94422 0.90055 1.96227 1.17113 58 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 54 1.64016 2.64492 0.41411 2.60223 59 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 55 2.31358 1.26232 2.77317 0.58765 60 U - - ) 1.38629 1.38629 1.38629 1.38629 0.01950 4.64006 4.64006 1.46634 0.26236 1.09861 0.40547 56 3.56450 0.24638 3.25555 1.88716 61 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00980 4.63036 * 1.46634 0.26236 0.00000 * //