INFERNAL1/a [1.1.5 | Sep 2023] NAME 2dG-I ACC RF01510 DESC 2dG-I riboswitch aptamer (M. florum) STATES 203 NODES 52 CLEN 63 W 81 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 15 10:38:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3DNew/RF01510/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.042969 CKSUM 349918378 NULL 0.000 0.000 0.000 0.000 GA 51.00 TC 51.10 NC 50.20 EFP7GF -10.3894 0.71916 ECMLC 0.67270 -4.27575 3.93148 1600000 299868 0.004002 ECMGC 0.43491 -15.49500 -3.14985 1600000 85857 0.004659 ECMLI 0.63630 -3.33801 5.05797 1600000 250815 0.004784 ECMGI 0.48934 -10.66374 -0.10424 1600000 70165 0.005701 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 81 101 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 IL 1 1 2 1 6 1 18 82 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 19 82 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 68 g c - - MP 3 2 3 7 6 2 23 81 101 -4.230 -9.064 -0.098 -7.841 -8.121 -8.516 0.187 -2.149 -2.608 1.951 -2.714 -3.474 1.021 -2.918 -2.670 2.081 -3.192 -0.154 0.788 -2.746 -0.681 -1.716 ML 4 2 3 7 6 1 16 79 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 16 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 12 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 19 81 101 -1.575 -1.636 -1.777 -5.514 -6.290 -5.951 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 19 80 100 -1.700 -0.669 -6.616 -4.784 -5.890 0.000 0.000 0.000 0.000 [ MATP 2 ] 4 65 C G - - MP 9 8 6 13 6 2 22 78 97 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.646 -4.561 -4.320 -0.784 -3.017 -4.719 3.580 -3.837 -4.373 -0.558 -4.623 -2.509 0.488 -4.709 -0.726 -3.209 ML 10 8 6 13 6 1 16 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 16 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 11 74 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 17 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 18 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 5 64 u a - - MP 15 14 6 19 6 2 21 76 95 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.565 -3.534 -3.494 0.116 -2.550 -4.107 1.749 -3.228 -3.512 0.340 -3.928 -1.587 2.788 -3.736 1.030 -2.413 ML 16 14 6 19 6 1 16 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 15 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 11 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 17 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 17 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 6 63 U A - - MP 21 20 6 25 6 2 20 74 93 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.293 -4.121 -4.120 -0.408 -3.040 -4.675 1.290 -3.743 -4.124 -0.169 -4.492 -2.016 3.375 -4.440 -0.714 -2.938 ML 22 20 6 25 6 1 15 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 15 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 11 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 16 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 17 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 7 62 A U - - MP 27 26 6 31 6 2 18 72 91 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.871 -2.882 -3.884 3.381 -4.261 -5.331 0.044 -3.920 -3.772 0.993 -4.324 -0.345 -0.373 -4.506 -1.897 -2.713 ML 28 26 6 31 6 1 14 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 14 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 11 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 16 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 16 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 8 61 U A - - MP 33 32 6 37 6 2 16 70 89 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.293 -4.121 -4.120 -0.408 -3.040 -4.675 1.290 -3.743 -4.124 -0.169 -4.492 -2.016 3.375 -4.440 -0.714 -2.938 ML 34 32 6 37 6 1 14 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 13 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 10 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 15 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 15 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 9 60 A U - - MP 39 38 6 43 4 2 14 68 87 -6.994 -7.201 -0.051 -5.615 -3.871 -2.882 -3.884 3.381 -4.261 -5.331 0.044 -3.920 -3.772 0.993 -4.324 -0.345 -0.373 -4.506 -1.897 -2.713 ML 40 38 6 43 4 1 13 68 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 11 67 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 10 66 86 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 14 69 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 13 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 10 - C - - - ML 45 44 6 47 3 1 13 65 85 -8.007 -0.020 -6.661 -1.845 1.651 -2.672 -1.238 D 46 44 6 47 3 0 10 64 84 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 11 - A - - - ML 48 47 3 50 3 1 12 64 84 -8.007 -0.020 -6.661 1.737 -2.458 -2.081 -2.009 D 49 47 3 50 3 0 9 63 82 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - g - - - ML 51 50 3 53 3 1 11 63 83 -8.395 -0.018 -6.712 -0.527 -1.248 0.936 -0.041 D 52 50 3 53 3 0 9 62 81 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 11 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 59 - C - - MR 54 53 3 56 3 1 10 62 82 -8.395 -0.018 -6.712 -1.845 1.651 -2.672 -1.238 D 55 53 3 56 3 0 8 61 80 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 10 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 58 - A - - MR 57 56 3 59 2 1 9 61 81 -8.408 -0.004 1.737 -2.458 -2.081 -2.009 D 58 56 3 59 2 0 8 60 80 -4.432 -0.068 IR 59 59 3 59 2 1 9 62 82 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 60 59 3 61 120 0 8 60 80 [ BEGL 14 ] - - - - - - S 61 60 1 62 4 0 0 33 52 -0.044 -6.857 -6.264 -6.904 [ MATP 15 ] 13 31 g c - - MP 62 61 1 66 6 2 2 33 52 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.618 -2.449 -3.723 1.066 -4.409 -4.732 0.019 -3.926 -3.551 2.547 -4.027 2.345 -0.260 -4.005 -1.926 -2.536 ML 63 61 1 66 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 1 66 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 1 66 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 30 G C - - MP 68 67 6 72 6 2 2 31 50 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.842 -2.644 -3.856 1.592 -4.388 -4.478 0.138 -4.184 -3.811 3.187 -4.222 -0.276 -0.171 -3.861 -1.845 -2.756 ML 69 67 6 72 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 29 u a - - MP 74 73 6 78 6 2 2 29 48 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.512 -3.487 -3.445 0.154 -2.513 -4.063 1.779 -3.188 -3.465 0.373 -3.883 -1.548 2.681 -3.686 1.239 -2.374 ML 75 73 6 78 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 28 A U - - MP 80 79 6 84 6 2 2 27 46 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.871 -2.882 -3.884 3.381 -4.261 -5.331 0.044 -3.920 -3.772 0.993 -4.324 -0.345 -0.373 -4.506 -1.897 -2.713 ML 81 79 6 84 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 27 G C - - MP 86 85 6 90 6 2 2 25 44 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.842 -2.644 -3.856 1.592 -4.388 -4.478 0.138 -4.184 -3.811 3.187 -4.222 -0.276 -0.171 -3.861 -1.845 -2.756 ML 87 85 6 90 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 26 C G - - MP 92 91 6 96 4 2 2 23 42 -6.994 -7.201 -0.051 -5.615 -4.646 -4.561 -4.320 -0.784 -3.017 -4.719 3.580 -3.837 -4.373 -0.558 -4.623 -2.509 0.488 -4.709 -0.726 -3.209 ML 93 91 6 96 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 95 91 6 96 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 96 96 5 96 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - A - - - ML 98 97 6 100 3 1 1 20 39 -8.007 -0.020 -6.661 1.737 -2.458 -2.081 -2.009 D 99 97 6 100 3 0 0 19 38 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - U - - - ML 101 100 3 103 3 1 1 19 37 -8.007 -0.020 -6.661 -1.565 -1.547 -2.303 1.640 D 102 100 3 103 3 0 0 18 37 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - A - - - ML 104 103 3 106 3 1 1 17 36 -8.007 -0.020 -6.661 1.737 -2.458 -2.081 -2.009 D 105 103 3 106 3 0 0 17 36 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - a - - - ML 107 106 3 109 3 1 1 16 35 -8.007 -0.020 -6.661 0.999 -1.037 -1.128 0.078 D 108 106 3 109 3 0 0 16 34 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - U - - - ML 110 109 3 112 3 1 1 15 33 -8.007 -0.020 -6.661 -0.808 -0.049 -1.564 1.087 D 111 109 3 112 3 0 0 15 33 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - G - - - ML 113 112 3 115 3 1 1 13 31 -8.007 -0.020 -6.661 -1.672 -2.906 1.744 -2.293 D 114 112 3 115 3 0 0 13 32 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - G - - - ML 116 115 3 118 2 1 1 1 1 * 0.000 -1.672 -2.906 1.744 -2.293 D 117 115 3 118 2 0 0 0 0 * 0.000 IL 118 118 3 118 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 119 118 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 120 60 1 121 2 0 0 40 59 -8.408 -0.004 IL 121 121 2 121 2 1 1 42 61 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 30 ] - - - - - - B 122 121 2 123 146 0 0 40 59 [ BEGL 31 ] - - - - - - S 123 122 1 124 4 0 0 21 40 -0.044 -6.857 -6.264 -6.904 [ MATP 32 ] 32 39 G C - - MP 124 123 1 128 4 2 2 21 40 -6.994 -7.201 -0.051 -5.615 -4.829 -3.136 -4.937 0.142 -5.355 -4.728 -0.698 -5.185 -4.384 3.658 -4.715 -0.838 -1.081 -4.525 -2.740 -3.812 ML 125 123 1 128 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 126 123 1 128 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 127 123 1 128 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 128 128 5 128 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 129 129 6 129 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 130 129 6 132 3 1 1 18 36 -2.007 -0.432 -6.661 1.737 -2.458 -2.081 -2.009 D 131 129 6 132 3 0 0 16 35 -6.174 -1.687 -0.566 IL 132 132 3 132 3 1 1 18 36 -2.107 -0.450 -4.807 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - c - - - ML 133 132 3 135 3 1 1 16 35 -8.007 -0.020 -6.661 -0.011 0.890 -1.395 -0.369 D 134 132 3 135 3 0 0 16 34 -6.174 -1.687 -0.566 IL 135 135 3 135 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - - - ML 136 135 3 138 3 1 1 15 33 -8.007 -0.020 -6.661 -1.845 1.651 -2.672 -1.238 D 137 135 3 138 3 0 0 15 33 -6.174 -1.687 -0.566 IL 138 138 3 138 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - c - - - ML 139 138 3 141 3 1 1 13 31 -8.007 -0.020 -6.661 -0.862 0.940 -1.672 0.284 D 140 138 3 141 3 0 0 13 32 -6.174 -1.687 -0.566 IL 141 141 3 141 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - - - ML 142 141 3 144 2 1 1 1 1 * 0.000 -1.672 -2.906 1.744 -2.293 D 143 141 3 144 2 0 0 0 0 * 0.000 IL 144 144 3 144 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 145 144 3 -1 0 0 0 0 0 [ BEGR 39 ] - - - - - - S 146 122 1 147 5 0 0 32 50 -7.131 -0.038 -6.946 -7.158 -8.050 IL 147 147 2 147 5 1 1 33 52 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 40 57 C G - - MP 148 147 2 152 6 2 2 32 50 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.646 -4.561 -4.320 -0.784 -3.017 -4.719 3.580 -3.837 -4.373 -0.558 -4.623 -2.509 0.488 -4.709 -0.726 -3.209 ML 149 147 2 152 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 2 152 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 151 147 2 152 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 41 56 u a - - MP 154 153 6 158 6 2 2 30 48 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.093 -2.958 -3.140 1.293 -2.492 -3.902 2.147 -3.047 -3.148 1.022 -3.638 -0.941 2.150 -3.310 -0.196 -2.074 ML 155 153 6 158 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 157 153 6 158 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 158 158 5 158 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 159 159 6 159 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 42 55 u a - - MP 160 159 6 164 6 2 2 28 46 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.391 -3.364 -3.355 0.299 -2.458 -4.007 2.275 -3.117 -3.364 0.510 -3.803 -1.408 2.310 -3.579 1.044 -2.277 ML 161 159 6 164 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 162 159 6 164 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 163 159 6 164 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 164 164 5 164 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 165 165 6 165 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 43 54 g c - - MP 166 165 6 170 6 2 2 26 44 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.223 -2.519 -3.236 1.570 -3.211 -3.983 1.565 -3.455 -3.348 2.543 -3.789 -0.293 0.787 -3.289 -0.829 -2.195 ML 167 165 6 170 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 168 165 6 170 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 169 165 6 170 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 170 170 5 170 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 171 171 6 171 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 44 53 a u - - MP 172 171 6 176 6 2 2 24 42 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.397 -2.447 -3.500 2.859 -4.069 -4.819 0.159 -3.681 -3.379 1.524 -3.933 1.351 -0.096 -3.930 -1.729 -2.346 ML 173 171 6 176 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 174 171 6 176 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 175 171 6 176 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 176 176 5 176 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 177 177 6 177 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 45 52 g c - - MP 178 177 6 182 6 2 2 22 40 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.604 -2.536 -3.626 2.036 -4.102 -4.434 0.342 -3.924 -3.625 2.904 -4.071 -0.154 0.036 -3.730 -1.620 -2.526 ML 179 177 6 182 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 6 182 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 6 182 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 46 51 A U - - MP 184 183 6 188 4 2 2 20 38 -6.994 -7.201 -0.051 -5.615 -3.871 -2.882 -3.884 3.381 -4.261 -5.331 0.044 -3.920 -3.772 0.993 -4.324 -0.345 -0.373 -4.506 -1.897 -2.713 ML 185 183 6 188 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 187 183 6 188 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 188 188 5 188 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 189 189 6 189 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - C - - - ML 190 189 6 192 3 1 1 16 35 -8.007 -0.020 -6.661 -1.845 1.651 -2.672 -1.238 D 191 189 6 192 3 0 0 16 34 -6.174 -1.687 -0.566 IL 192 192 3 192 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - C - - - ML 193 192 3 195 3 1 1 15 33 -8.007 -0.020 -6.661 -1.845 1.651 -2.672 -1.238 D 194 192 3 195 3 0 0 15 33 -6.174 -1.687 -0.566 IL 195 195 3 195 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - u - - - ML 196 195 3 198 3 1 1 13 31 -8.007 -0.020 -6.661 0.169 -0.813 -0.165 0.500 D 197 195 3 198 3 0 0 13 32 -6.174 -1.687 -0.566 IL 198 198 3 198 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - A - - - ML 199 198 3 201 2 1 1 1 1 * 0.000 1.737 -2.458 -2.081 -2.009 D 200 198 3 201 2 0 0 0 0 * 0.000 IL 201 201 3 201 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 202 201 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME 2dG-I ACC RF01510 DESC 2dG-I riboswitch aptamer (M. florum) LENG 63 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 15 10:38:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3DNew/RF01510/CM NSEQ 4 EFFN 3.285156 CKSUM 349918378 STATS LOCAL MSV -8.2673 0.71916 STATS LOCAL VITERBI -8.7346 0.71916 STATS LOCAL FORWARD -3.4321 0.71916 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29781 1.40306 1.42814 1.42184 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 0.00000 * 1 0.88065 2.18478 1.07902 2.01699 1 a - - ( 1.38629 1.38629 1.38629 1.38629 0.20043 1.80370 4.07873 0.76551 0.62567 1.09861 0.40547 2 3.63026 0.15628 3.45001 2.44842 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 3 2.79833 1.65923 2.58354 0.39557 5 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 4 3.46634 2.28492 3.26613 0.18774 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 5 0.20838 3.29093 2.20671 3.19851 7 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 6 3.46275 2.28458 3.26431 0.18800 8 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 7 0.20859 3.28953 2.20637 3.19664 9 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 8 3.33557 0.12478 3.90178 2.78863 10 C - - , 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 9 0.10030 3.64611 3.33238 3.39224 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 10 1.97669 2.49759 0.59741 1.47423 12 G - - , 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 11 2.08474 3.09949 0.25307 2.91556 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 12 1.53542 2.86759 0.41117 2.73449 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 13 2.77271 1.63761 2.55980 0.40685 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 14 0.20832 3.29139 2.20681 3.19912 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 15 1.53486 2.86496 0.41192 2.73104 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 16 3.61995 0.15701 3.44455 2.44649 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 17 0.10030 3.64611 3.33238 3.39224 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 18 2.99821 2.89788 3.52845 0.14429 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 19 0.10030 3.64611 3.33238 3.39224 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 20 0.60852 2.27609 2.35228 1.35476 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 21 2.21555 1.40336 2.75596 0.54199 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 22 3.10600 4.03307 0.09404 3.60256 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 23 3.10600 4.03307 0.09404 3.60256 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 24 2.72569 3.60901 0.13520 3.38487 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 25 2.96546 0.46895 2.67815 1.36997 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 26 3.41352 2.54737 3.09626 0.17011 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 27 0.71721 2.72403 1.00178 2.53765 29 a - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 28 2.96208 0.46940 2.67674 1.36993 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 29 3.10862 1.02591 2.88590 0.61422 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 30 2.85980 3.65455 0.11716 3.59704 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 31 0.10030 3.64611 3.33238 3.39224 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.39708 1.16865 4.07873 0.10559 2.30050 1.09861 0.40547 32 1.46131 0.61839 2.64279 1.84458 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 33 3.33557 0.12478 3.90178 2.78863 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 34 2.27270 0.60442 2.87138 1.22434 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 35 3.10600 4.03307 0.09404 3.60256 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 36 3.73319 0.14382 3.47375 2.53786 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 37 3.65149 0.15483 3.46116 2.45235 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 38 1.71260 1.20334 1.95310 0.97397 41 u - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 39 2.56791 1.15066 2.34518 0.67129 42 U - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 40 1.51284 1.64678 0.80119 1.97867 43 g - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 41 0.55739 3.08770 1.12356 2.87229 44 A - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 42 1.17636 2.72411 0.59671 2.58525 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 43 0.20850 3.29015 2.20652 3.19747 46 A - - < 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 44 3.33557 0.12478 3.90178 2.78863 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 45 3.33557 0.12478 3.90178 2.78863 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 46 1.27815 2.06123 1.47212 1.00864 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 47 0.10030 3.64611 3.33238 3.39224 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 48 3.41641 2.54784 3.09752 0.16989 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 49 2.82390 0.67439 2.53449 1.04453 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 50 3.08090 1.99544 2.87888 0.27190 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 51 2.22167 0.88924 1.52399 1.33651 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 52 0.99928 2.51563 0.78829 2.33900 55 g - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 53 1.09957 2.12435 1.07939 1.57180 56 g - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 54 2.74148 3.63353 0.13222 3.41268 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 55 0.10030 3.64611 3.33238 3.39224 58 A - - , 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 56 3.33557 0.12478 3.90178 2.78863 59 C - - , 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 57 3.41446 2.54752 3.09667 0.17004 60 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 58 0.21329 3.45542 2.12053 3.20555 61 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 59 3.41774 2.54806 3.09810 0.16979 62 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 60 0.21305 3.45748 2.12086 3.20783 63 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 61 0.64503 2.74993 1.09509 2.56513 64 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03444 4.07873 4.07873 1.46634 0.26236 1.09861 0.40547 62 2.73001 3.61569 0.13438 3.39244 65 G - - ) 1.38629 1.38629 1.38629 1.38629 0.20043 1.80370 4.07873 0.76551 0.62567 1.09861 0.40547 63 1.59684 1.20799 1.98622 1.01762 68 u - - ) 1.38629 1.38629 1.38629 1.38629 0.01737 4.06165 * 1.46634 0.26236 0.00000 * //