INFERNAL1/a [1.1.5 | Sep 2023] NAME CRISPR-DR43 ACC RF01352 DESC CRISPR RNA direct repeat element STATES 91 NODES 31 CLEN 29 W 98 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 09:59:23 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01352/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 3.000000 CKSUM 1676645369 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -4.0388 0.74982 ECMLC 0.48787 -9.64801 3.48580 1600000 727762 0.001649 ECMGC 0.50884 -6.91825 5.80073 1600000 258705 0.001546 ECMLI 0.52810 -5.93493 5.15620 1600000 419708 0.002859 ECMGI 0.57335 -3.42218 7.32302 1600000 189516 0.002111 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 98 175 -7.331 -7.538 -0.041 -5.952 IL 1 1 2 1 4 1 1 100 178 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 99 177 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 1 1 98 176 -5.700 -0.057 -5.700 -1.036 0.804 0.246 -0.783 D 4 2 3 5 3 0 0 94 172 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 1 96 174 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 7 5 3 8 3 0 0 93 170 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 1 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 1 95 172 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 10 8 3 11 3 0 0 91 169 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 1 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 1 93 171 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 13 11 3 14 3 0 0 90 167 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 1 92 169 -5.700 -0.057 -5.700 0.836 0.192 -1.099 -0.723 D 16 14 3 17 3 0 0 89 165 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 1 90 167 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 19 17 3 20 3 0 0 87 163 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 1 89 165 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 22 20 3 23 3 0 0 85 162 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 1 87 164 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 25 23 3 26 3 0 0 84 160 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - c - - - ML 27 26 3 29 3 1 1 86 162 -5.700 -0.057 -5.700 -1.337 0.979 -1.524 0.363 D 28 26 3 29 3 0 0 82 158 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 1 84 160 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 31 29 3 32 3 0 0 81 156 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 1 83 158 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 34 32 3 35 3 0 0 79 154 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 1 81 157 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 37 35 3 38 3 0 0 78 153 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 1 80 155 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 40 38 3 41 3 0 0 76 151 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - u - - - ML 42 41 3 44 3 1 1 78 153 -5.700 -0.057 -5.700 0.234 -0.959 -1.022 0.862 D 43 41 3 44 3 0 0 74 149 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - a - - - ML 45 44 3 47 3 1 1 76 151 -5.700 -0.057 -5.700 0.807 0.233 -1.097 -0.719 D 46 44 3 47 3 0 0 73 147 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - c - - - ML 48 47 3 50 3 1 1 75 149 -5.700 -0.057 -5.700 0.237 0.847 -1.204 -0.764 D 49 47 3 50 3 0 0 71 145 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 1 73 147 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 52 50 3 53 3 0 0 69 143 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 1 71 145 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 55 53 3 56 3 0 0 67 141 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 1 70 143 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 58 56 3 59 3 0 0 66 138 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 1 68 141 -5.700 -0.057 -5.700 -2.184 1.697 -2.397 -1.523 D 61 59 3 62 3 0 0 64 136 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 1 66 139 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 64 62 3 65 3 0 0 62 134 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 66 65 3 68 3 1 1 64 136 -5.700 -0.057 -5.700 -1.931 -2.762 1.770 -2.482 D 67 65 3 68 3 0 0 60 131 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 1 62 134 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 70 68 3 71 3 0 0 57 129 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 1 60 131 -5.700 -0.057 -5.700 -1.919 -1.548 -2.090 1.659 D 73 71 3 74 3 0 0 55 126 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 1 58 129 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 76 74 3 77 3 0 0 52 123 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 1 55 126 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 79 77 3 80 3 0 0 49 119 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 1 52 122 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 82 80 3 83 3 0 0 44 114 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 84 83 3 86 3 1 1 48 117 -5.700 -0.057 -5.700 1.769 -2.512 -2.247 -2.276 D 85 83 3 86 3 0 0 32 101 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 87 86 3 89 2 1 1 1 1 * 0.000 -2.184 1.697 -2.397 -1.523 D 88 86 3 89 2 0 0 0 0 * 0.000 IL 89 89 3 89 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 90 89 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME CRISPR-DR43 ACC RF01352 DESC CRISPR RNA direct repeat element LENG 29 MAXL 98 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Wed Jul 10 09:59:23 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01352/CM NSEQ 3 EFFN 3.000000 CKSUM 1676645369 STATS LOCAL MSV -7.2589 0.74982 STATS LOCAL VITERBI -7.7189 0.74982 STATS LOCAL FORWARD -2.7599 0.74982 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15213 1.38684 1.95402 1.22940 1.38629 1.38629 1.38629 1.38629 0.02311 5.08141 4.09624 0.39730 1.11515 0.00000 * 1 2.10444 0.82929 1.21580 1.92927 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.80691 1.25329 2.14796 1.88729 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.31320 0.70796 2.44273 1.13481 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 1.22439 2.05131 2.09462 0.78882 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.82676 1.22496 2.14677 1.88450 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 1.22214 0.79921 2.22098 1.91588 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.72479 3.30093 0.15917 3.10680 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.71655 2.45957 2.83486 0.23610 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 0.16029 3.12721 2.94402 2.96400 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.89989 0.21012 3.04772 2.44162 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //