INFERNAL1/a [1.1.5 | Sep 2023] NAME CRISPR-DR14 ACC RF01327 DESC CRISPR RNA direct repeat element STATES 91 NODES 31 CLEN 29 W 94 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 08:34:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01327/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 5.000000 CKSUM 1081783685 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.30 NC 44.40 EFP7GF -7.7630 0.73428 ECMLC 0.42888 -11.92008 3.61161 1600000 937745 0.001280 ECMGC 0.44173 -10.09488 6.00674 1600000 490937 0.000815 ECMLI 0.42824 -9.37412 5.16976 1600000 608214 0.001973 ECMGI 0.46434 -7.18060 7.71883 1600000 404296 0.000989 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 94 170 -7.853 -8.060 -0.028 -6.474 IL 1 1 2 1 4 1 1 96 172 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 96 172 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 1 94 171 -6.170 -0.041 -6.170 1.276 -0.157 -1.797 -1.346 D 4 2 3 5 3 0 0 91 167 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 2 102 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 1 93 169 -6.170 -0.041 -6.170 -2.901 -2.363 -3.099 1.830 D 7 5 3 8 3 0 0 90 165 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 1 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 1 91 167 -6.170 -0.041 -6.170 -2.901 -2.363 -3.099 1.830 D 10 8 3 11 3 0 0 88 164 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 1 99 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 1 90 166 -6.170 -0.041 -6.170 -2.901 -2.363 -3.099 1.830 D 13 11 3 14 3 0 0 87 162 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 1 89 164 -6.170 -0.041 -6.170 1.904 -3.738 -3.372 -3.544 D 16 14 3 17 3 0 0 85 161 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 1 97 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 1 87 163 -6.170 -0.041 -6.170 -3.122 1.844 -3.376 -2.335 D 19 17 3 20 3 0 0 84 159 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 1 86 161 -6.170 -0.041 -6.170 1.904 -3.738 -3.372 -3.544 D 22 20 3 23 3 0 0 82 157 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 1 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 1 84 159 -6.170 -0.041 -6.170 -2.901 -2.363 -3.099 1.830 D 25 23 3 26 3 0 0 81 156 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - a - - - ML 27 26 3 29 3 1 1 83 158 -6.170 -0.041 -6.170 0.885 -1.391 -1.469 0.497 D 28 26 3 29 3 0 0 80 154 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 1 81 156 -6.170 -0.041 -6.170 -2.253 1.430 -2.487 -0.125 D 31 29 3 32 3 0 0 78 152 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 1 90 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 1 80 154 -6.170 -0.041 -6.170 -3.122 1.844 -3.376 -2.335 D 34 32 3 35 3 0 0 77 151 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 1 78 153 -6.170 -0.041 -6.170 1.904 -3.738 -3.372 -3.544 D 37 35 3 38 3 0 0 75 149 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 1 77 151 -6.170 -0.041 -6.170 -1.958 1.031 -2.168 0.562 D 40 38 3 41 3 0 0 73 147 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 1 86 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 1 75 149 -6.170 -0.041 -6.170 1.283 -1.577 -1.688 -0.119 D 43 41 3 44 3 0 0 72 145 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 1 74 147 -6.170 -0.041 -6.170 -2.901 -2.363 -3.099 1.830 D 46 44 3 47 3 0 0 70 143 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 1 83 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 1 72 146 -6.170 -0.041 -6.170 1.904 -3.738 -3.372 -3.544 D 49 47 3 50 3 0 0 69 142 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 1 71 144 -6.170 -0.041 -6.170 -2.637 -3.732 1.877 -3.461 D 52 50 3 53 3 0 0 67 140 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 1 69 142 -6.170 -0.041 -6.170 -2.901 -2.363 -3.099 1.830 D 55 53 3 56 3 0 0 65 138 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 1 67 140 -6.170 -0.041 -6.170 -2.901 -2.363 -3.099 1.830 D 58 56 3 59 3 0 0 64 136 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 1 77 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 1 66 138 -6.170 -0.041 -6.170 1.334 -2.092 -0.079 -1.750 D 61 59 3 62 3 0 0 62 134 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 1 64 136 -6.170 -0.041 -6.170 1.904 -3.738 -3.372 -3.544 D 64 62 3 65 3 0 0 60 131 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 1 74 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 1 62 134 -6.170 -0.041 -6.170 -2.901 -2.363 -3.099 1.830 D 67 65 3 68 3 0 0 58 129 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 1 60 131 -6.170 -0.041 -6.170 1.290 -0.188 -1.807 -1.356 D 70 68 3 71 3 0 0 56 127 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 1 58 129 -6.170 -0.041 -6.170 -2.901 -2.363 -3.099 1.830 D 73 71 3 74 3 0 0 54 124 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 1 56 127 -6.170 -0.041 -6.170 1.904 -3.738 -3.372 -3.544 D 76 74 3 77 3 0 0 51 121 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 1 67 138 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 1 54 124 -6.170 -0.041 -6.170 1.904 -3.738 -3.372 -3.544 D 79 77 3 80 3 0 0 48 117 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 1 66 136 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 1 51 121 -6.170 -0.041 -6.170 1.904 -3.738 -3.372 -3.544 D 82 80 3 83 3 0 0 43 113 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 84 83 3 86 3 1 1 47 116 -6.170 -0.041 -6.170 1.904 -3.738 -3.372 -3.544 D 85 83 3 86 3 0 0 32 101 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 87 86 3 89 2 1 1 1 1 * 0.000 -3.122 1.844 -3.376 -2.335 D 88 86 3 89 2 0 0 0 0 * 0.000 IL 89 89 3 89 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 90 89 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME CRISPR-DR14 ACC RF01327 DESC CRISPR RNA direct repeat element LENG 29 MAXL 94 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Wed Jul 10 08:34:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01327/CM NSEQ 5 EFFN 5.000000 CKSUM 1081783685 STATS LOCAL MSV -6.4188 0.73428 STATS LOCAL VITERBI -7.2433 0.73428 STATS LOCAL FORWARD -2.9980 0.73428 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.93309 1.68255 2.39781 1.10912 1.38629 1.38629 1.38629 1.38629 0.01604 5.44299 4.45781 0.39730 1.11515 0.00000 * 1 0.50175 1.49513 2.63164 2.31924 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 2 3.39709 3.02431 3.53405 0.11794 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 3 3.39709 3.02431 3.53405 0.11794 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 4 3.39709 3.02431 3.53405 0.11794 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 5 0.06648 3.97700 3.72374 3.84293 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 6 3.55029 0.10797 3.72605 3.00490 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 7 0.06648 3.97700 3.72374 3.84293 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 8 3.39709 3.02431 3.53405 0.11794 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 9 0.77307 2.35030 2.40442 1.04201 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 10 2.94770 0.39509 3.11002 1.47265 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 11 3.55029 0.10797 3.72605 3.00490 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 12 0.06648 3.97700 3.72374 3.84293 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 13 2.74361 0.67139 2.88895 0.99687 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 14 0.49675 2.47968 2.55656 1.46901 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 15 3.39709 3.02431 3.53405 0.11794 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 16 0.06648 3.97700 3.72374 3.84293 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 17 3.21442 3.97314 0.08523 3.78506 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 18 3.39709 3.02431 3.53405 0.11794 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 19 3.39709 3.02431 3.53405 0.11794 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 20 0.46154 2.83642 1.44090 2.59916 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 21 0.06648 3.97700 3.72374 3.84293 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 22 3.39709 3.02431 3.53405 0.11794 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 23 0.49188 1.51690 2.63861 2.32613 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 24 3.39709 3.02431 3.53405 0.11794 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 25 0.06648 3.97700 3.72374 3.84293 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 26 0.06648 3.97700 3.72374 3.84293 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 27 0.06648 3.97700 3.72374 3.84293 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 28 0.06648 3.97700 3.72374 3.84293 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 29 3.55029 0.10797 3.72605 3.00490 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //