INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD109A ACC RF01278 DESC Small nucleolar RNA SNORD109A STATES 205 NODES 64 CLEN 67 W 97 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 22:07:23 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01278/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.061035 CKSUM 569964703 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.80 EFP7GF -8.8276 0.71886 ECMLC 0.67156 -5.57119 3.09839 1600000 405245 0.002961 ECMGC 0.38947 -18.90034 -4.22163 1600000 121579 0.003290 ECMLI 0.64689 -3.95272 4.69097 1600000 321764 0.003729 ECMGI 0.43405 -13.05135 -0.73127 1600000 84036 0.004760 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 97 138 -9.128 -9.067 -0.021 -7.844 -8.123 -8.519 IL 1 1 2 1 6 1 22 99 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 22 99 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 74 G C - - MP 3 2 3 7 6 2 26 97 139 -9.128 -9.067 -0.021 -7.844 -8.123 -8.519 -3.647 -2.620 -3.661 0.798 -4.032 -4.101 0.281 -4.083 -3.712 3.277 -4.084 -0.415 -0.017 -1.004 -1.627 -2.685 ML 4 2 3 7 6 1 20 96 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 19 95 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 14 92 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 21 97 138 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 22 97 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 73 G C - - MP 9 8 6 13 6 2 24 95 137 -9.128 -9.067 -0.021 -7.844 -8.123 -8.519 -4.842 -3.142 -4.951 0.133 -5.374 -4.733 -0.714 -5.201 -4.393 3.661 -4.723 -0.845 -1.096 -4.533 -2.756 -3.826 ML 10 8 6 13 6 1 19 94 135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 18 93 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 14 90 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 21 95 136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 21 95 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 72 A U - - MP 15 14 6 19 6 2 23 93 135 -9.128 -9.067 -0.021 -7.844 -8.123 -8.519 -3.479 -2.521 -3.571 3.037 -4.152 -4.937 0.089 -3.737 -3.451 1.432 -4.011 0.956 -0.170 -4.035 -1.806 -2.414 ML 16 14 6 19 6 1 18 92 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 17 91 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 14 89 130 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 20 93 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 20 93 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 71 u g - - MP 21 20 6 25 6 2 21 91 133 -9.128 -9.067 -0.021 -7.844 -8.123 -8.519 -3.858 -3.852 -3.657 -0.211 -2.522 -4.141 1.760 -3.272 -3.699 0.002 -4.037 -1.942 1.603 -3.967 2.707 -2.588 ML 22 20 6 25 6 1 17 90 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 16 90 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 13 87 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 19 91 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 18 91 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 70 C G - - MP 27 26 6 31 4 2 19 89 131 -7.001 -7.208 -0.051 -5.622 -4.661 -4.577 -4.332 -0.799 -3.026 -4.729 3.584 -3.847 -4.385 -0.574 -4.634 -2.525 0.477 -4.723 -0.735 -3.221 ML 28 26 6 31 4 1 16 89 130 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 14 88 129 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 13 87 128 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 18 90 131 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 17 89 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 33 32 6 35 3 1 17 87 129 -8.014 -0.020 -6.668 0.566 -1.475 0.694 -0.885 D 34 32 6 35 3 0 12 85 126 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 17 88 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 36 35 3 38 3 1 17 86 128 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 37 35 3 38 3 0 11 84 125 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 16 87 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 39 38 3 41 3 1 16 85 127 -8.014 -0.020 -6.668 -1.577 -1.558 -2.316 1.644 D 40 38 3 41 3 0 11 83 124 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 15 86 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 42 41 3 44 3 1 15 84 126 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 43 41 3 44 3 0 10 82 123 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 14 85 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 45 44 3 47 3 1 14 83 125 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 46 44 3 47 3 0 9 81 122 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 84 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 48 47 3 50 3 1 13 82 124 -8.014 -0.020 -6.668 -1.577 -1.558 -2.316 1.644 D 49 47 3 50 3 0 8 80 121 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 13 83 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 51 50 3 53 3 1 12 81 123 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 52 50 3 53 3 0 8 79 120 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 12 82 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 54 53 3 56 3 1 12 80 122 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 55 53 3 56 3 0 7 78 120 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 11 81 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - g - - - ML 57 56 3 59 3 1 11 79 121 -8.014 -0.020 -6.668 -0.078 -1.239 0.885 -0.355 D 58 56 3 59 3 0 6 77 119 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 10 80 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - c - - - ML 60 59 3 62 3 1 10 78 120 -8.014 -0.020 -6.668 0.459 0.473 -1.188 -0.323 D 61 59 3 62 3 0 6 76 118 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 9 79 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 63 62 3 65 3 1 9 77 119 -8.014 -0.132 -3.578 1.740 -2.471 -2.093 -2.024 D 64 62 3 65 3 0 5 76 117 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 9 78 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 66 65 3 68 3 1 9 77 118 -7.903 -0.022 -6.557 0.264 -0.354 -1.001 0.602 D 67 65 3 68 3 0 4 75 116 -6.946 -0.746 -1.337 IL 68 68 3 68 3 1 8 77 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 69 68 3 71 3 1 9 76 117 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 70 68 3 71 3 0 2 73 115 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 7 76 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 72 71 3 74 3 1 8 75 116 -8.014 -0.020 -6.668 1.301 -0.826 -1.305 -0.818 D 73 71 3 74 3 0 2 72 114 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 7 75 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - u - - - ML 75 74 3 77 3 1 7 74 115 -8.014 -0.020 -6.668 -0.212 -0.423 -1.247 0.978 D 76 74 3 77 3 0 1 71 113 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 6 74 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 78 77 3 80 3 1 7 73 114 -8.014 -0.020 -6.668 -1.577 -1.558 -2.316 1.644 D 79 77 3 80 3 0 0 70 112 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 5 73 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 81 80 3 83 3 1 6 72 113 -8.014 -0.020 -6.668 -0.337 -1.949 1.356 -1.360 D 82 80 3 83 3 0 0 69 111 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 4 72 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 84 83 3 86 3 1 5 71 112 -8.014 -0.020 -6.668 -1.577 -1.558 -2.316 1.644 D 85 83 3 86 3 0 0 68 110 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 4 71 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 87 86 3 89 3 1 5 70 111 -8.014 -0.020 -6.668 -1.862 1.655 -2.689 -1.251 D 88 86 3 89 3 0 0 67 109 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 3 70 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 90 89 3 92 3 1 4 69 110 -8.014 -0.020 -6.668 -0.957 -0.472 -1.699 1.296 D 91 89 3 92 3 0 0 66 108 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 3 69 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 93 92 3 95 3 1 4 68 109 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 94 92 3 95 3 0 0 65 107 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 2 68 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 96 95 3 98 3 1 3 67 108 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 97 95 3 98 3 0 0 64 106 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 2 67 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 99 98 3 101 3 1 3 66 107 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 100 98 3 101 3 0 0 63 105 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 66 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 102 101 3 104 3 1 2 65 106 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 103 101 3 104 3 0 0 62 104 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 65 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - A - - - ML 105 104 3 107 3 1 2 64 105 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 106 104 3 107 3 0 0 61 103 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 64 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 108 107 3 110 3 1 2 63 104 -8.014 -0.020 -6.668 -0.800 0.004 -1.559 1.059 D 109 107 3 110 3 0 0 60 102 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 63 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 111 110 3 113 3 1 1 62 103 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 112 110 3 113 3 0 0 59 101 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 62 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 114 113 3 116 3 1 1 61 102 -8.014 -0.020 -6.668 -0.781 1.126 -0.937 -0.489 D 115 113 3 116 3 0 0 58 100 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 61 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 117 116 3 119 3 1 1 60 101 -8.014 -0.020 -6.668 -1.577 -1.558 -2.316 1.644 D 118 116 3 119 3 0 0 57 99 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 60 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 120 119 3 122 3 1 1 59 100 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 121 119 3 122 3 0 0 56 98 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 59 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 123 122 3 125 3 1 1 58 99 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 124 122 3 125 3 0 0 55 97 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 58 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 126 125 3 128 3 1 1 57 98 -8.014 -0.020 -6.668 -0.337 -1.949 1.356 -1.360 D 127 125 3 128 3 0 0 54 96 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 57 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - g - - - ML 129 128 3 131 3 1 1 56 97 -8.014 -0.020 -6.668 -0.106 -1.208 0.861 -0.283 D 130 128 3 131 3 0 0 53 95 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 56 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - - - ML 132 131 3 134 3 1 1 55 96 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 133 131 3 134 3 0 0 52 93 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 55 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 135 134 3 137 3 1 1 54 95 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 136 134 3 137 3 0 0 51 92 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 54 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - - - ML 138 137 3 140 3 1 1 53 94 -3.684 -0.132 -6.668 -1.862 1.655 -2.689 -1.251 D 139 137 3 140 3 0 0 48 89 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 57 99 -0.646 -1.575 -5.307 0.000 0.000 0.000 0.000 [ MATL 42 ] 49 - u - - - ML 141 140 3 143 3 1 1 36 55 -8.014 -0.020 -6.668 -0.118 -0.827 -0.664 0.914 D 142 140 3 143 3 0 0 34 54 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 50 - C - - - ML 144 143 3 146 3 1 1 34 54 -8.014 -0.020 -6.668 -0.392 1.141 -1.629 -0.496 D 145 143 3 146 3 0 0 33 53 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - - - ML 147 146 3 149 3 1 1 33 53 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 148 146 3 149 3 0 0 32 51 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 52 - U - - - ML 150 149 3 152 3 1 1 32 51 -8.014 -0.020 -6.668 -0.808 -0.025 -1.565 1.076 D 151 149 3 152 3 0 0 31 50 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 53 - U - - - ML 153 152 3 155 3 1 1 31 50 -8.014 -0.020 -6.668 -1.577 -1.558 -2.316 1.644 D 154 152 3 155 3 0 0 30 49 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 54 - g - - - ML 156 155 3 158 3 1 1 30 49 -8.014 -0.020 -6.668 0.043 -0.055 0.241 -0.277 D 157 155 3 158 3 0 0 29 48 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 55 - C - - - ML 159 158 3 161 3 1 1 29 48 -8.014 -0.020 -6.668 -1.144 1.279 -1.970 -0.209 D 160 158 3 161 3 0 0 28 47 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 56 - A - - - ML 162 161 3 164 3 1 1 28 47 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 163 161 3 164 3 0 0 27 46 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 57 - G - - - ML 165 164 3 167 3 1 1 27 46 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 166 164 3 167 3 0 0 26 45 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 58 - A - - - ML 168 167 3 170 3 1 1 26 45 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 169 167 3 170 3 0 0 25 44 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 59 - U - - - ML 171 170 3 173 3 1 1 25 43 -8.014 -0.020 -6.668 -1.577 -1.558 -2.316 1.644 D 172 170 3 173 3 0 0 24 43 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 60 - G - - - ML 174 173 3 176 3 1 1 23 42 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 175 173 3 176 3 0 0 22 41 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 61 - U - - - ML 177 176 3 179 3 1 1 22 41 -8.014 -0.020 -6.668 -0.668 -0.969 -0.813 1.196 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 62 - C - - - ML 180 179 3 182 3 1 1 21 40 -8.014 -0.020 -6.668 -1.862 1.655 -2.689 -1.251 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 63 - A - - - ML 183 182 3 185 3 1 1 20 39 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - A - - - ML 186 185 3 188 3 1 1 19 37 -8.014 -0.020 -6.668 1.740 -2.471 -2.093 -2.024 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - U - - - ML 189 188 3 191 3 1 1 17 36 -8.014 -0.020 -6.668 -1.577 -1.558 -2.316 1.644 D 190 188 3 191 3 0 0 17 36 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 66 - C - - - ML 192 191 3 194 3 1 1 16 35 -8.014 -0.020 -6.668 -1.862 1.655 -2.689 -1.251 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 67 - U - - - ML 195 194 3 197 3 1 1 15 33 -8.014 -0.020 -6.668 -1.577 -1.558 -2.316 1.644 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.014 -0.020 -6.668 -1.686 -2.922 1.747 -2.309 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - A - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 1.740 -2.471 -2.093 -2.024 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD109A ACC RF01278 DESC Small nucleolar RNA SNORD109A LENG 67 MAXL 165 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 22:07:23 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01278/CM NSEQ 7 EFFN 2.238770 CKSUM 569964703 STATS LOCAL MSV -8.4446 0.71886 STATS LOCAL VITERBI -9.0613 0.71886 STATS LOCAL FORWARD -3.6758 0.71886 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22531 1.68099 1.29033 1.40665 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 0.00000 * 1 2.08048 2.50445 0.39393 2.12856 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 2 2.56470 3.20202 0.17504 3.14762 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 3 0.59245 2.64245 1.23010 2.48196 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 4 2.73562 1.49688 2.50678 0.46237 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 5 3.15039 0.25245 2.91607 2.07049 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 6 0.98773 2.45017 0.88757 2.04296 6 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 7 0.16360 3.18925 2.91825 2.88797 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 8 2.56316 2.53512 3.07861 0.22607 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 9 2.64862 3.51928 0.15742 3.09480 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 10 0.16360 3.18925 2.91825 2.88797 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 11 2.56316 2.53512 3.07861 0.22607 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 12 2.64862 3.51928 0.15742 3.09480 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 13 0.16360 3.18925 2.91825 2.88797 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 14 1.45447 2.27491 0.75154 1.65010 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 15 1.06321 1.03985 2.24213 1.63519 15 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 16 0.16360 3.18925 2.91825 2.88797 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12698 3.93219 2.30615 1.46634 0.26236 1.09861 0.40547 17 1.20158 1.63441 2.09759 0.96374 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04355 3.84876 3.84876 1.46634 0.26236 0.33176 1.26465 18 0.16360 3.18925 2.91825 2.88797 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 19 0.46580 1.97085 2.33165 1.99589 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 20 1.54580 1.68680 2.27826 0.69458 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 21 2.56316 2.53512 3.07861 0.22607 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 22 1.64419 2.79561 0.42433 2.39091 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 23 2.56316 2.53512 3.07861 0.22607 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 24 2.78562 0.21404 3.36100 2.34040 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 25 2.09761 1.72607 2.61419 0.46834 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 26 2.64862 3.51928 0.15742 3.09480 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 27 0.16360 3.18925 2.91825 2.88797 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 28 2.64862 3.51928 0.15742 3.09480 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 29 2.64862 3.51928 0.15742 3.09480 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 30 0.16360 3.18925 2.91825 2.88797 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 31 1.98058 1.37905 2.50934 0.63701 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 32 2.64862 3.51928 0.15742 3.09480 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 33 1.98051 0.57315 2.05930 1.76778 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 34 2.56316 2.53512 3.07861 0.22607 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 35 2.64862 3.51928 0.15742 3.09480 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 36 0.16360 3.18925 2.91825 2.88797 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 37 1.64419 2.79561 0.42433 2.39091 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 38 1.47452 2.25208 0.76869 1.59795 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 39 2.64862 3.51928 0.15742 3.09480 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 40 0.16360 3.18925 2.91825 2.88797 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 41 2.78562 0.21404 3.36100 2.34040 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.12698 2.30615 3.93219 1.89588 0.16274 1.09861 0.40547 42 1.47742 1.98230 1.85427 0.73929 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 43 1.68560 0.56617 2.57150 1.76873 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 44 0.16360 3.18925 2.91825 2.88797 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 45 1.98597 1.40002 2.51380 0.62511 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 46 2.56316 2.53512 3.07861 0.22607 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 47 1.36574 1.41668 1.20381 1.59829 54 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 48 2.23982 0.47335 2.81809 1.55642 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 49 0.16360 3.18925 2.91825 2.88797 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 50 2.64862 3.51928 0.15742 3.09480 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 51 0.16360 3.18925 2.91825 2.88797 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 52 2.56316 2.53512 3.07861 0.22607 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 53 2.64862 3.51928 0.15742 3.09480 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 54 1.88810 2.09271 1.96662 0.53553 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 55 2.78562 0.21404 3.36100 2.34040 62 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 56 0.16360 3.18925 2.91825 2.88797 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 57 0.16360 3.18925 2.91825 2.88797 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 58 2.56316 2.53512 3.07861 0.22607 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 59 2.78562 0.21404 3.36100 2.34040 66 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 60 2.56316 2.53512 3.07861 0.22607 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 61 2.64862 3.51928 0.15742 3.09480 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 62 0.16360 3.18925 2.91825 2.88797 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 63 2.34907 3.08441 0.21794 2.90756 70 G - - > 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 64 1.56719 2.66824 0.44679 2.49720 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 65 2.70450 1.74044 2.44532 0.39905 72 U - - > 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 66 3.36884 0.20677 3.03745 2.25950 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.03999 3.93219 3.93219 1.46634 0.26236 1.09861 0.40547 67 2.64235 0.40471 2.32093 1.81121 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.02020 3.91239 * 1.46634 0.26236 0.00000 * //