INFERNAL1/a [1.1.5 | Sep 2023] NAME Yfr1 ACC RF01116 DESC Cyanobacterial functional RNA 1 STATES 186 NODES 50 CLEN 59 W 86 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 21:18:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01116/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 37 EFFN 5.722534 CKSUM 2280054883 NULL 0.000 0.000 0.000 0.000 GA 38.00 TC 38.00 NC 37.90 EFP7GF -13.1810 0.71947 ECMLC 0.58202 -9.73871 0.81318 1600000 557625 0.002152 ECMGC 0.42817 -19.64651 -6.03104 1600000 136115 0.002939 ECMLI 0.56799 -8.00454 2.18595 1600000 391687 0.003064 ECMGI 0.47514 -13.64235 -2.24733 1600000 89829 0.004453 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 86 115 -7.857 -9.102 -0.040 -5.556 IL 1 1 2 1 4 1 17 87 117 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 87 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 73 - U - - MR 3 2 3 5 3 1 16 86 115 -9.307 -0.010 -7.625 -3.327 -3.039 -4.112 1.896 D 4 2 3 5 3 0 15 84 114 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 17 86 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 72 - U - - MR 6 5 3 8 2 1 15 85 114 -1.975 -0.423 -2.605 -1.879 -3.352 1.793 D 7 5 3 8 2 0 14 83 113 -4.432 -0.068 IR 8 8 3 8 2 1 15 85 114 -3.348 -0.149 0.000 0.000 0.000 0.000 [ BIF 3 ] - - - - - - B 9 8 3 10 72 0 14 83 113 [ BEGL 4 ] - - - - - - S 10 9 1 11 4 0 0 37 57 -0.080 -7.460 -4.539 -7.508 [ MATP 5 ] 1 24 g c - - MP 11 10 1 15 6 2 2 37 57 -9.563 -9.502 -0.015 -8.278 -8.558 -8.953 -4.251 -2.948 -4.208 1.833 -5.318 -5.086 -0.582 -4.660 -4.305 2.835 -4.711 1.727 -0.818 -4.302 -2.555 -3.081 ML 12 10 1 15 6 1 1 35 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 1 15 6 1 1 35 56 -7.538 -6.267 -2.176 -6.245 -0.511 -4.459 -0.118 0.119 -0.815 0.510 D 14 10 1 15 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 36 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 23 U A - - MP 17 16 6 21 6 2 2 35 55 -9.563 -9.502 -0.015 -8.278 -8.558 -8.953 -4.965 -4.946 -4.660 -1.043 -3.300 -5.082 2.456 -4.103 -4.672 -0.884 -4.974 -2.872 3.061 -5.013 -0.948 -3.479 ML 18 16 6 21 6 1 1 33 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 33 54 -7.538 -6.267 -0.893 -6.245 -1.379 -4.459 0.466 -0.071 -0.642 0.037 D 20 16 6 21 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 34 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 34 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 22 G C - - MP 23 22 6 27 6 2 2 33 53 -9.604 -9.543 -0.074 -8.320 -8.600 -4.591 -6.585 -4.016 -7.162 -1.140 -7.726 -5.378 -2.639 -7.330 -5.368 3.883 -5.616 -1.831 -2.999 -5.617 -4.828 -6.015 ML 24 22 6 27 6 1 1 31 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 6 1 1 31 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 26 22 6 27 6 0 0 29 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 32 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 21 g c - - MP 29 28 6 33 6 2 2 31 52 -9.546 -9.485 -0.016 -8.262 -8.542 -8.937 -1.340 -1.921 -1.920 1.114 -0.281 -2.770 1.436 -1.734 -1.591 1.869 -1.809 -0.579 1.208 -2.059 -0.161 -0.856 ML 30 28 6 33 6 1 1 29 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 29 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 6 33 6 0 0 28 49 -10.008 -8.707 -0.916 -5.186 -5.203 -1.279 IL 33 33 5 33 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 30 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 20 G C - - MP 35 34 6 39 6 2 2 29 50 -9.604 -9.543 -0.036 -5.844 -8.600 -8.995 -4.462 -3.061 -4.403 1.993 -5.521 -5.046 -0.696 -4.900 -4.477 3.219 -4.838 -0.166 -0.945 -4.368 -2.694 -3.292 ML 36 34 6 39 6 1 1 27 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 27 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 28 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 19 G C - - MP 41 40 6 45 6 2 2 27 48 -9.583 -9.523 -0.087 -8.299 -5.888 -4.799 -4.506 -3.113 -4.490 1.032 -5.696 -5.298 -0.900 -4.909 -4.470 3.053 -4.883 2.009 -1.129 -4.578 -2.887 -3.335 ML 42 40 6 45 6 1 1 26 46 -6.593 -6.939 -0.918 -1.347 -6.789 -4.318 0.020 0.341 -0.673 0.127 MR 43 40 6 45 6 1 1 25 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 23 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 27 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 26 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 18 g c - - MP 47 46 6 51 6 2 2 25 46 -9.534 -9.473 -0.078 -8.250 -8.530 -4.520 -3.818 -2.683 -3.728 1.985 -4.407 -4.411 0.792 -4.237 -4.011 2.842 -4.353 0.145 -0.078 -3.673 -1.769 -2.691 ML 48 46 6 51 6 1 1 24 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 23 44 -7.286 -6.015 -1.923 -5.993 -0.634 -4.206 0.858 -0.735 -0.465 -0.215 D 50 46 6 51 6 0 0 21 41 -9.896 -8.594 -4.391 -5.073 -5.091 -0.169 IL 51 51 5 51 6 1 1 25 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 24 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 17 c g - - MP 53 52 6 57 4 2 2 23 44 -3.525 -7.967 -0.203 -4.640 -3.238 -3.166 -3.327 0.672 -2.708 -4.136 2.883 -3.251 -3.315 1.055 -3.837 -1.178 1.180 -1.778 -0.084 -2.256 ML 54 52 6 57 4 1 1 22 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 4 1 1 21 42 -5.148 -4.177 -2.044 -0.569 0.858 -0.735 -0.465 -0.215 D 56 52 6 57 4 0 0 19 40 -5.963 -5.645 -0.517 -1.915 IL 57 57 5 57 4 1 1 24 44 -1.784 -1.508 -1.559 -5.751 0.000 0.000 0.000 0.000 IR 58 58 6 58 3 1 1 22 43 -1.289 -0.858 -4.682 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - u - - - ML 59 58 6 61 3 1 1 15 34 -8.895 -0.011 -7.549 -0.041 -0.286 0.085 0.198 D 60 58 6 61 3 0 0 15 34 -7.077 -1.304 -0.767 IL 61 61 3 61 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - u - - - ML 62 61 3 64 3 1 1 14 33 -8.931 -0.044 -5.176 0.250 -0.154 -0.980 0.491 D 63 61 3 64 3 0 0 14 33 -6.684 -2.197 -0.373 IL 64 64 3 64 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - a - - - ML 65 64 3 67 3 1 1 12 31 -8.898 -0.111 -3.801 0.983 -0.671 -1.182 -0.068 D 66 64 3 67 3 0 0 13 31 -7.045 -2.558 -0.282 IL 67 67 3 67 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - u - - - ML 68 67 3 70 2 1 1 1 1 * 0.000 0.211 -0.476 -0.401 0.450 D 69 67 3 70 2 0 0 0 0 * 0.000 IL 70 70 3 70 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 17 ] - - - - - - E 71 70 3 -1 0 0 0 0 0 [ BEGR 18 ] - - - - - - S 72 9 1 73 3 0 2 63 93 -1.986 -0.430 -7.618 IL 73 73 2 73 3 1 2 65 94 -1.119 -0.936 -5.876 0.000 0.000 0.000 0.000 [ MATL 19 ] 27 - A - - - ML 74 73 2 76 3 1 2 62 91 -8.964 -0.010 -7.618 1.855 -3.523 -2.387 -3.268 D 75 73 2 76 3 0 0 60 89 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 63 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 28 - C - - - ML 77 76 3 79 3 1 2 61 90 -8.964 -0.010 -7.618 -3.942 1.915 -4.639 -3.023 D 78 76 3 79 3 0 0 59 88 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 62 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 29 - U - - - ML 80 79 3 82 3 1 2 60 89 -8.964 -0.010 -7.618 -3.327 -3.039 -4.112 1.896 D 81 79 3 82 3 0 0 58 87 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 61 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 30 - C - - - ML 83 82 3 85 3 1 1 59 88 -8.964 -0.010 -7.618 -3.942 1.915 -4.639 -3.023 D 84 82 3 85 3 0 0 57 86 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 60 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 31 - C - - - ML 86 85 3 88 3 1 1 58 87 -8.964 -0.010 -7.618 -3.942 1.915 -4.639 -3.023 D 87 85 3 88 3 0 0 56 85 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 59 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 32 - U - - - ML 89 88 3 91 3 1 1 57 86 -8.964 -0.010 -7.618 -3.327 -3.039 -4.112 1.896 D 90 88 3 91 3 0 0 55 84 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 58 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 33 - C - - - ML 92 91 3 94 3 1 1 56 85 -8.964 -0.010 -7.618 -3.942 1.915 -4.639 -3.023 D 93 91 3 94 3 0 0 54 83 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 57 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 34 - A - - - ML 95 94 3 97 3 1 1 55 84 -8.964 -0.010 -7.618 1.931 -4.286 -3.763 -3.998 D 96 94 3 97 3 0 0 53 82 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 56 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 35 - C - - - ML 98 97 3 100 3 1 1 54 83 -8.964 -0.010 -7.618 -3.942 1.915 -4.639 -3.023 D 99 97 3 100 3 0 0 52 81 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 55 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - A - - - ML 101 100 3 103 3 1 1 53 82 -8.964 -0.010 -7.618 1.931 -4.286 -3.763 -3.998 D 102 100 3 103 3 0 0 51 80 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 54 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - C - - - ML 104 103 3 106 3 1 1 51 81 -8.964 -0.037 -5.431 -3.942 1.915 -4.639 -3.023 D 105 103 3 106 3 0 0 50 79 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 53 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 38 - C - - - ML 107 106 3 109 3 1 1 51 80 -8.938 -0.010 -7.592 -0.183 1.159 -2.165 -0.591 D 108 106 3 109 3 0 0 49 78 -6.590 -1.049 -0.982 IL 109 109 3 109 3 1 1 52 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 39 - a - - - ML 110 109 3 112 3 1 1 50 79 -8.964 -0.010 -7.618 0.774 0.417 -1.755 -0.602 D 111 109 3 112 3 0 0 48 77 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 51 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 40 - c - - - ML 113 112 3 115 3 1 1 49 78 -8.964 -0.010 -7.618 -0.636 0.971 -2.075 0.213 D 114 112 3 115 3 0 0 47 76 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 50 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 41 - a - - - ML 116 115 3 118 3 1 1 48 77 -8.964 -0.050 -4.961 0.932 0.252 -1.397 -0.939 D 117 115 3 118 3 0 0 46 75 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 49 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 42 - c - - - ML 119 118 3 121 3 1 1 47 76 -8.925 -0.348 -2.236 0.325 0.666 -1.712 -0.224 D 120 118 3 121 3 0 0 45 74 -6.759 -2.272 -0.352 IL 121 121 3 121 3 1 1 48 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - u - - - ML 122 121 3 124 3 1 1 46 75 -8.590 -0.228 -2.800 0.263 -0.346 -1.011 0.601 D 123 121 3 124 3 0 0 44 73 -8.559 -4.072 -0.092 IL 124 124 3 124 3 1 1 47 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - c - - - ML 125 124 3 127 5 1 1 45 74 -7.460 -0.172 -3.346 -7.488 -8.380 -0.469 0.640 -1.546 0.461 D 126 124 3 127 5 0 0 44 73 -7.122 -0.330 -6.383 -3.482 -3.382 IL 127 127 3 127 5 1 1 45 75 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 45 70 c g - - MP 128 127 3 132 6 2 2 44 74 -9.504 -9.444 -0.016 -8.220 -8.500 -8.895 -2.444 -2.159 -2.684 0.664 -2.451 -3.306 2.172 0.372 -2.584 0.764 -3.027 1.175 1.026 -2.766 -0.416 -0.765 ML 129 127 3 132 6 1 1 43 72 -7.051 -7.397 -0.605 -1.806 -7.247 -4.776 -0.340 0.833 -1.069 -0.071 MR 130 127 3 132 6 1 1 42 72 -7.268 -5.997 -1.173 -5.975 -1.109 -4.189 0.840 -0.720 -0.447 -0.202 D 131 127 3 132 6 0 0 40 70 -9.470 -8.169 -1.656 -4.648 -4.665 -0.741 IL 132 132 5 132 6 1 1 43 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 43 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 46 69 G C - - MP 134 133 6 138 6 2 2 42 72 -9.604 -9.543 -0.015 -8.320 -8.600 -8.995 -5.742 -3.716 -5.926 -0.532 -6.982 -5.310 -1.977 -6.326 -5.103 3.734 -5.395 0.270 -2.246 -5.222 -4.066 -4.794 ML 135 133 6 138 6 1 1 40 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 40 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 37 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 41 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 41 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 47 68 C G - - MP 140 139 6 144 6 2 2 40 70 -9.604 -9.543 -0.015 -8.320 -8.600 -8.995 -6.731 -6.822 -6.006 -3.010 -4.415 -6.132 3.897 -5.479 -6.237 -2.951 -6.147 -4.919 -1.241 -6.656 -2.288 -5.040 ML 141 139 6 144 6 1 1 38 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 38 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 35 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 39 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 39 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 48 67 C G - - MP 146 145 6 150 6 2 2 38 68 -9.604 -9.543 -0.015 -8.320 -8.600 -8.995 -5.449 -5.517 -4.987 -1.620 -3.483 -5.281 3.629 -4.345 -5.036 -1.487 -5.254 -3.542 0.482 -5.410 0.100 -3.832 ML 147 145 6 150 6 1 1 36 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 36 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 33 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 37 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 37 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 49 66 C G - - MP 152 151 6 156 6 2 2 36 66 -9.604 -9.543 -0.015 -8.320 -8.600 -8.995 -5.558 -5.661 -5.048 -1.790 -3.511 -5.307 3.655 -4.387 -5.111 -1.677 -5.304 -3.741 -0.081 -5.495 0.492 -3.908 ML 153 151 6 156 6 1 1 34 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 34 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 31 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 35 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 35 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 50 65 G C - - MP 158 157 6 162 6 2 2 34 64 -9.604 -9.543 -0.015 -8.320 -8.600 -8.995 -6.028 -3.825 -6.314 -0.745 -7.302 -5.334 -2.242 -6.676 -5.205 3.802 -5.480 -0.366 -2.521 -5.364 -4.364 -5.180 ML 159 157 6 162 6 1 1 32 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 32 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 29 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 33 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 33 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 51 64 a u - - MP 164 163 6 168 4 2 2 32 62 -2.204 -5.486 -0.414 -6.624 -4.398 -3.153 -4.438 2.669 -5.629 -5.747 -1.041 -4.741 -4.367 2.120 -4.877 1.906 -1.234 -4.814 -2.973 -3.238 ML 165 163 6 168 4 1 1 30 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 29 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 28 58 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 32 62 -1.936 -0.739 -2.947 -6.684 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 31 61 -0.900 -1.157 -5.990 0.000 0.000 0.000 0.000 [ MATL 44 ] 54 - c - - - ML 170 169 6 172 3 1 1 17 35 -8.964 -0.010 -7.618 -0.708 0.837 -1.208 0.224 D 171 169 6 172 3 0 0 17 35 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 55 - u - - - ML 173 172 3 175 3 1 1 15 34 -8.964 -0.010 -7.618 -0.385 -0.912 0.327 0.534 D 174 172 3 175 3 0 0 16 34 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 56 - c - - - ML 176 175 3 178 3 1 1 14 32 -8.964 -0.067 -4.526 0.221 0.298 -1.224 0.235 D 177 175 3 178 3 0 0 14 33 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 57 - g - - - ML 179 178 3 181 3 1 1 12 31 -8.908 -0.298 -2.438 0.103 -0.895 0.555 -0.122 D 180 178 3 181 3 0 0 13 31 -6.947 -2.460 -0.304 IL 181 181 3 181 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - u - - - ML 182 181 3 184 2 1 1 1 1 * 0.000 -0.061 -0.187 -1.433 0.842 D 183 181 3 184 2 0 0 0 0 * 0.000 IL 184 184 3 184 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 185 184 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Yfr1 ACC RF01116 DESC Cyanobacterial functional RNA 1 LENG 59 MAXL 128 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 21:18:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01116/CM NSEQ 37 EFFN 10.419800 CKSUM 2280054883 STATS LOCAL MSV -7.7470 0.71947 STATS LOCAL VITERBI -8.6360 0.71947 STATS LOCAL FORWARD -3.5665 0.71947 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.67676 1.04255 1.44979 1.48790 1.38629 1.38629 1.38629 1.38629 0.07151 4.91894 2.78543 1.46634 0.26236 0.00000 * 1 1.41180 3.56739 0.36592 3.36665 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.01558 4.86301 4.86301 1.46634 0.26236 2.34607 0.10064 2 4.00721 1.06578 3.83731 0.48482 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.01558 4.86301 4.86301 1.46634 0.26236 0.21256 1.65292 3 3.83885 4.89533 0.03727 4.88135 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.09445 4.91894 2.49108 1.46634 0.26236 1.09861 0.40547 4 1.72602 1.37816 1.05910 1.49969 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.01593 4.84042 4.84042 1.46634 0.26236 0.16250 1.89721 5 1.26128 3.56276 0.42410 3.38180 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 6 2.11335 3.50928 0.20100 3.46306 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.11132 4.91894 2.32238 1.46634 0.26236 1.09861 0.40547 7 1.23643 2.22906 0.62683 2.69313 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.10438 4.82382 2.39597 1.46634 0.26236 2.73550 0.06706 8 2.33732 0.57109 1.96100 1.62057 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.14795 2.32068 3.23603 0.42429 1.06199 0.24907 1.51197 9 1.48010 1.57021 1.26384 1.26650 11 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01554 4.86517 4.86517 1.46634 0.26236 0.77608 0.61657 10 1.20291 1.48210 2.17471 1.02477 12 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04086 4.89313 3.42538 1.46634 0.26236 1.86974 0.16743 11 0.62707 1.91311 2.38842 1.48522 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09396 4.86777 2.50120 1.46634 0.26236 2.28504 0.10733 12 1.24486 1.75770 1.66004 1.05140 14 u - - _ 1.38629 1.38629 1.38629 1.38629 0.27040 2.65707 1.79113 0.77658 0.61614 0.10829 2.27659 13 1.99411 1.94970 0.50219 2.15118 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.01713 4.76884 4.76884 1.46634 0.26236 0.66656 0.72046 14 2.77545 0.75600 2.12359 1.05402 18 c - - > 1.38629 1.38629 1.38629 1.38629 0.04578 4.85295 3.29831 1.46634 0.26236 0.18676 1.76984 15 3.80428 0.63864 3.61458 0.86089 19 C - - > 1.38629 1.38629 1.38629 1.38629 0.01514 4.89128 4.89128 1.46634 0.26236 0.35244 1.21393 16 3.58779 0.49476 3.35403 1.11572 20 C - - > 1.38629 1.38629 1.38629 1.38629 0.09445 4.91894 2.49108 1.46634 0.26236 1.09861 0.40547 17 1.41564 1.19008 1.43200 1.54083 21 c - - > 1.38629 1.38629 1.38629 1.38629 0.01593 4.84042 4.84042 1.46634 0.26236 0.16250 1.89721 18 4.59395 0.05385 4.58225 3.43956 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 19 0.52661 3.60468 1.04639 3.47389 23 A - - > 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 20 3.35765 0.81638 3.25910 0.72416 24 u - - > 1.38629 1.38629 1.38629 1.38629 0.34700 1.25216 4.91894 0.71106 0.67555 1.09861 0.40547 21 0.06473 4.42968 3.29050 4.30297 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 22 4.79551 0.02998 5.16828 4.16188 28 C - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 23 4.43980 4.16878 4.99850 0.03461 29 U - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 24 4.79551 0.02998 5.16828 4.16188 30 C - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 25 4.79551 0.02998 5.16828 4.16188 31 C - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 26 4.43980 4.16878 4.99850 0.03461 32 U - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 27 4.79551 0.02998 5.16828 4.16188 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 28 0.02273 5.10887 4.71698 4.89430 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 29 4.79551 0.02998 5.16828 4.16188 35 C - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 30 0.02273 5.10887 4.71698 4.89430 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 31 4.79551 0.02998 5.16828 4.16188 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.03535 4.91894 3.59624 1.46634 0.26236 1.09861 0.40547 32 1.55177 0.47067 3.40771 2.03695 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.01503 4.89861 4.89861 1.46634 0.26236 0.42712 1.05667 33 0.77975 0.99717 3.06130 2.07361 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 34 1.97566 0.60835 3.30564 1.27151 40 C - - - 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 35 0.65145 1.12030 2.63323 2.51723 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.04569 4.91894 3.28731 1.46634 0.26236 1.09861 0.40547 36 1.14566 0.80950 2.98513 1.68001 42 c - - - 1.38629 1.38629 1.38629 1.38629 0.28245 4.88843 1.43324 1.46634 0.26236 1.96181 0.15153 37 1.18443 1.65181 2.20514 0.93613 43 u - - - 1.38629 1.38629 1.38629 1.38629 0.19512 4.62576 1.78694 1.46634 0.26236 3.63169 0.02683 38 1.88684 0.81027 2.80727 1.06903 44 c - - - 1.38629 1.38629 1.38629 1.38629 0.02353 4.45417 4.45417 1.46634 0.26236 0.18623 1.77244 39 2.55826 0.68862 1.33868 1.84452 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.01554 4.86525 4.86525 1.46634 0.26236 0.21936 1.62471 40 3.41786 4.38648 0.06164 4.23009 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 41 4.78419 0.03777 4.89086 3.85414 47 C - - < 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 42 4.16404 0.18232 4.08621 2.00753 48 C - - < 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 43 4.28179 0.16973 4.21311 2.05975 49 C - - < 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 44 3.64414 4.70392 0.04613 4.61753 50 G - - < 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 45 0.79086 4.12668 0.67537 3.84257 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.27861 1.44453 4.91894 0.31915 1.29743 1.09861 0.40547 46 2.09960 0.69578 2.34016 1.26408 54 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 47 1.80957 2.15702 1.06669 0.97694 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 48 1.22832 1.10654 2.41363 1.24820 56 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05894 4.91894 2.99707 1.46634 0.26236 1.09861 0.40547 49 1.34519 2.10847 0.91070 1.53319 57 g - - _ 1.38629 1.38629 1.38629 1.38629 0.24274 4.87538 1.57074 1.46634 0.26236 0.25671 1.48543 50 1.46317 1.50780 2.64909 0.74153 58 u - - _ 1.38629 1.38629 1.38629 1.38629 0.39447 1.14909 4.70609 0.86124 0.54929 0.07085 2.68234 51 4.02641 1.42092 3.90483 0.32777 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 52 4.67818 0.09564 4.57267 2.63688 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 53 3.18540 4.34634 0.07410 4.06835 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 54 2.61298 4.22831 0.11301 3.96516 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 55 4.05900 5.06030 0.03254 4.77885 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 56 4.33203 0.14573 4.30311 2.21693 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.12472 4.91894 2.20778 1.46634 0.26236 1.09861 0.40547 57 2.21467 2.60849 0.99257 0.80622 70 u - - > 1.38629 1.38629 1.38629 1.38629 0.36197 1.21890 4.81064 0.05422 2.94173 0.12480 2.14281 58 3.73005 2.91828 4.24183 0.09695 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.01472 4.91894 4.91894 1.46634 0.26236 1.09861 0.40547 59 4.43980 4.16878 4.99850 0.03461 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.11738 2.20044 * 0.12800 2.11907 0.00000 * //