Rfam: Seed sequence alignment for RF01116

BA000039.2/1862773-1862841 Thermosynechococcus elongatus BP-1 49.7 CP000100.1/1899750-1899688 Synechococcus elongatus PCC 7942 62.1 BA000045.2/931736-931675 Gloeobacter violaceus PCC 7421 59 CP000435.1/875873-875817 Synechococcus sp. CC9311 65.8 BA000022.2/2960900-2960963 Synechocystis sp. PCC 6803 58.3 CP000240.1/1399746-1399809 Synechococcus sp. JA-2-3B'a(2-13) 55.4 AAVU01000041.1/49291-49227 Lyngbya sp. PCC 8106 60 CP000576.1/977377-977324 Prochlorococcus marinus str. MIT 9301 58 CT978603.1/664633-664578 Synechococcus sp. RCC307 58.6 CT971583.1/1467225-1467281 Synechococcus sp. WH 7803 71.6 AADV02000124.1/3571-3634 Crocosphaera watsonii WH 8501 61.1

GCGGAGAC..ACAC..GUUUCCGUucACUCCUCACACCACACCCCGCCUGGacAGUUAuugguUCGGGCGgCU. GCGGAGAC..AAAU..GUUUCCGUucACUCCUCACACCACACUUCGCCCGGgcAAC--...gcUCGGGCG.UU. GCGGAGAC..GCAU..GUUUCCGUucACUCCUCACACCAUGUUCCGCCCGG..UCGCU.....CCGGGCGgUU. --GUGCGGg.CUUCggCC-UACAC..ACUCCUCACACCCCCC--GGCCCGA..CGCGU.....UCGGGCU.UU. GCGGAGAC..GUAA..GUUUCCGUucACUCCUCACACCACACUCCGCCUGGauGAU--...guUCGGGCGgUU. GCGGAGAC..GCAU..GUUUCCGUucACUCCUCACACCAUCUUCCGCUCGGc.GUCAA....gUCGGGCGgUU. GCGGAGAC..GUAU..GUUUCCGUucACUCCUCACACCACACUCCGCCUGGa.CUAUU...guUCGGGCGgUU. AUG-GGG-..GAAA..-CCC-CAU..ACUCCUCACACACUAAAUCGCCCGA..UUAA-.....UCGGGC-.UUu GUGCGGCG..CUU-..CGCCGCAC..ACUCCUCACACCACCAC--GCCCGG..CGAGC.....CCGGGU-.UUu GUGCGGGC..GUAU..GCCCACAC..ACUCCUCACACCCCCC--GGCCCGA..CGCGU.....UCGGGCU.UU. GCGGAGAC..AAAC..GUUUCCGUucACUCCUCACACCACACUCCGCCCGG..CAUUA...guUCGGGCGgUU.