INFERNAL1/a [1.1.5 | Sep 2023] NAME c-di-GMP-I ACC RF01051 DESC c-di-GMP-I riboswitch aptamer STATES 270 NODES 71 CLEN 87 W 137 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 10:41:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01051/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 155 EFFN 4.422760 CKSUM 4098006892 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -12.6281 0.71862 ECMLC 0.64767 -8.39180 0.77375 1600000 454203 0.002642 ECMGC 0.38873 -15.47617 -3.55586 1600000 41159 0.009718 ECMLI 0.56232 -7.41943 2.20578 1600000 269013 0.004461 ECMGI 0.44519 -10.09676 0.13674 1600000 38076 0.010505 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 137 199 -7.720 -7.927 -0.031 -6.341 IL 1 1 2 1 4 8 41 139 201 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 7 40 138 201 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 9 40 137 199 -8.693 -0.012 -7.347 0.046 -0.016 -0.639 0.418 D 4 2 3 5 3 3 35 134 197 -6.174 -1.687 -0.566 IL 5 5 3 5 3 7 39 137 200 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 8 39 136 198 -8.693 -0.012 -7.347 0.348 -0.059 -0.794 0.252 D 7 5 3 8 3 3 34 133 196 -6.174 -1.687 -0.566 IL 8 8 3 8 3 6 38 136 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 8 38 135 197 -8.693 -0.012 -7.347 0.476 -0.315 -0.377 0.050 D 10 8 3 11 3 3 33 132 195 -6.174 -1.687 -0.566 IL 11 11 3 11 3 6 38 135 198 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 7 37 134 196 -8.693 -0.012 -7.347 0.126 0.177 -0.804 0.269 D 13 11 3 14 3 2 33 131 194 -6.174 -1.687 -0.566 IL 14 14 3 14 3 5 37 134 197 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - - - ML 15 14 3 17 3 7 36 133 195 -8.693 -0.012 -7.347 -0.235 -0.537 0.704 -0.265 D 16 14 3 17 3 2 32 130 193 -6.174 -1.687 -0.566 IL 17 17 3 17 3 5 36 133 196 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 6 35 132 194 -8.693 -0.012 -7.347 0.628 -0.540 -0.508 0.088 D 19 17 3 20 3 2 31 129 192 -6.174 -1.687 -0.566 IL 20 20 3 20 3 5 35 132 195 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 21 20 3 23 3 6 34 131 193 -8.693 -0.012 -7.347 0.811 -0.772 -0.654 0.034 D 22 20 3 23 3 1 30 128 191 -6.174 -1.687 -0.566 IL 23 23 3 23 3 4 34 131 194 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 6 33 130 192 -8.693 -0.012 -7.347 1.275 -0.719 -1.460 -0.715 D 25 23 3 26 3 1 30 127 190 -6.174 -1.687 -0.566 IL 26 26 3 26 3 4 33 130 193 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 5 32 129 191 -8.693 -0.012 -7.347 1.249 -1.098 -1.436 -0.345 D 28 26 3 29 3 1 29 127 189 -6.174 -1.687 -0.566 IL 29 29 3 29 3 4 32 129 192 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - a - - - ML 30 29 3 32 3 5 32 128 190 -8.693 -0.012 -7.347 0.661 -0.949 0.021 -0.174 D 31 29 3 32 3 1 28 126 189 -6.174 -1.687 -0.566 IL 32 32 3 32 3 3 32 128 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 4 31 127 189 -9.046 -0.012 -7.364 -1.444 -3.359 1.763 -2.816 D 34 32 3 35 3 1 28 125 188 -5.620 -0.734 -1.403 IL 35 35 3 35 3 3 30 127 190 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 136 - a - - MR 36 35 3 38 3 4 30 126 189 -9.046 -0.012 -7.364 0.929 -0.939 -0.648 -0.094 D 37 35 3 38 3 0 26 124 186 -6.390 -1.568 -0.620 IR 38 38 3 38 3 2 29 126 189 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 135 - a - - MR 39 38 3 41 3 3 29 125 188 -9.046 -0.012 -7.364 0.892 -0.747 -0.510 -0.241 D 40 38 3 41 3 0 26 123 185 -6.390 -1.568 -0.620 IR 41 41 3 41 3 2 29 125 188 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 134 - g - - MR 42 41 3 44 3 3 28 124 187 -9.046 -0.012 -7.364 0.258 -1.397 0.851 -0.689 D 43 41 3 44 3 0 25 122 184 -6.390 -1.568 -0.620 IR 44 44 3 44 3 2 28 124 187 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 133 - C - - MR 45 44 3 47 3 3 27 123 186 -9.046 -0.012 -7.364 -1.058 1.446 -2.254 -0.770 D 46 44 3 47 3 0 24 121 184 -6.390 -1.568 -0.620 IR 47 47 3 47 3 2 27 123 186 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 132 - C - - MR 48 47 3 50 3 2 26 122 185 -9.046 -0.012 -7.364 -2.239 1.691 -2.811 -1.262 D 49 47 3 50 3 0 24 120 183 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 26 122 185 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 131 - g - - MR 51 50 3 53 2 1 25 121 184 -9.196 -0.002 0.452 -1.853 0.991 -1.444 D 52 50 3 53 2 0 24 120 183 -4.432 -0.068 IR 53 53 3 53 2 1 25 121 184 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 18 ] - - - - - - B 54 53 3 55 135 0 24 120 183 [ BEGL 19 ] - - - - - - S 55 54 1 56 4 0 0 41 60 -0.033 -7.275 -6.682 -7.322 [ MATP 20 ] 12 44 G C - - MP 56 55 1 60 6 2 2 41 60 -9.453 -9.392 -0.017 -8.168 -8.448 -8.843 -4.994 -3.358 -4.967 0.002 -5.392 -4.896 0.155 -5.325 -4.705 3.628 -4.982 -1.067 -1.087 -4.590 -2.711 -3.885 ML 57 55 1 60 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 1 60 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 1 60 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 13 43 C G - - MP 62 61 6 66 4 2 2 39 58 -7.720 -7.927 -0.031 -6.341 -5.307 -5.361 -4.855 -1.482 -3.374 -5.154 3.662 -4.245 -4.917 -1.339 -5.121 -3.383 0.452 -5.282 -0.517 -3.718 ML 63 61 6 66 4 1 1 39 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 65 61 6 66 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 66 66 5 66 4 1 1 41 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 67 67 6 67 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 14 - A - - - ML 68 67 6 70 3 1 1 36 56 -8.693 -0.012 -7.347 1.773 -2.584 -2.239 -2.303 D 69 67 6 70 3 0 0 35 55 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - A - - - ML 71 70 3 73 3 1 1 35 55 -8.693 -0.012 -7.347 1.679 -1.703 -2.247 -1.838 D 72 70 3 73 3 0 0 34 54 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - A - - - ML 74 73 3 76 3 1 1 34 54 -9.046 -0.012 -7.364 1.664 -2.052 -1.730 -1.793 D 75 73 3 76 3 0 0 33 53 -5.620 -0.734 -1.403 IL 76 76 3 76 3 1 1 35 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 42 - C - - MR 77 76 3 79 3 1 1 33 53 -9.046 -0.012 -7.364 -3.064 1.829 -3.859 -1.956 D 78 76 3 79 3 0 0 32 51 -6.390 -1.568 -0.620 IR 79 79 3 79 3 1 1 34 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 41 - A - - MR 80 79 3 82 3 1 1 32 52 -9.046 -0.012 -7.364 1.400 -1.529 -1.040 -0.920 D 81 79 3 82 3 0 0 31 50 -6.390 -1.568 -0.620 IR 82 82 3 82 3 1 1 33 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 40 - G - - MR 83 82 3 85 5 1 1 31 51 -7.748 -0.025 -7.563 -7.775 -8.667 -1.684 -2.700 1.721 -2.076 D 84 82 3 85 5 0 0 30 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 85 85 3 85 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 17 39 c g - - MP 86 85 3 90 6 2 2 30 50 -9.453 -9.392 -0.017 -8.168 -8.448 -8.843 -2.891 -2.416 -3.017 1.082 -2.541 -3.160 2.660 -3.039 -3.018 0.868 -3.560 -0.783 1.515 -3.164 -0.182 -2.011 ML 87 85 3 90 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 3 90 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 3 90 6 0 0 26 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 18 38 c g - - MP 92 91 6 96 6 2 2 28 48 -9.453 -9.392 -0.017 -8.168 -8.448 -8.843 -3.529 -3.465 -3.577 0.429 -2.770 -4.356 2.723 -3.374 -2.507 0.473 -4.046 -1.405 2.081 -3.762 0.010 -2.439 ML 93 91 6 96 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 95 91 6 96 6 0 0 24 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 96 96 5 96 6 1 1 28 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 97 97 6 97 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 19 37 c g - - MP 98 97 6 102 6 2 2 26 46 -9.453 -9.392 -0.022 -8.168 -8.448 -7.488 -2.432 -2.505 -2.589 1.515 -2.066 -3.433 1.929 -2.518 -2.624 1.105 -2.976 -0.164 1.839 -2.731 -0.100 -1.704 ML 99 97 6 102 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 6 102 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 6 102 6 0 0 22 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 26 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 20 36 g c - - MP 104 103 6 108 6 2 2 24 44 -7.206 -9.387 -0.024 -8.163 -8.443 -8.838 -2.886 -2.591 -2.976 1.674 -2.833 -3.767 1.529 -3.193 -3.071 2.056 -3.571 -0.116 1.253 -3.059 0.188 -2.031 ML 105 103 6 108 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 20 40 -9.150 -7.849 -3.646 -4.328 -4.345 -0.295 IL 108 108 5 108 6 1 1 24 43 -2.672 -2.935 -0.699 -4.590 -5.366 -5.027 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 22 35 u a - - MP 110 109 6 114 6 2 2 22 42 -7.792 -9.387 -0.021 -8.163 -8.443 -8.838 -2.731 -2.762 -2.869 0.873 -2.068 -3.713 1.933 -2.682 -2.880 1.408 -3.430 -0.758 1.950 -3.017 0.780 -1.905 ML 111 109 6 114 6 1 1 21 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 21 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 19 39 -9.150 -7.849 -3.646 -4.328 -4.345 -0.295 IL 114 114 5 114 6 1 1 22 42 -2.634 -2.896 -0.724 -4.552 -5.328 -4.988 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 24 34 c g - - MP 116 115 6 120 4 2 2 20 40 -6.552 -6.466 -0.067 -5.404 -3.092 -2.983 -3.194 0.984 -2.663 -4.024 2.321 -3.171 -3.193 1.515 -3.723 -0.601 1.574 -3.334 0.418 -2.136 ML 117 115 6 120 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 119 115 6 120 4 0 0 19 38 -4.664 -4.345 -2.361 -0.481 IL 120 120 5 120 4 1 1 22 41 -1.747 -2.137 -1.179 -4.916 0.000 0.000 0.000 0.000 IR 121 121 6 121 3 1 1 21 40 -1.509 -0.750 -4.209 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - G - - - ML 122 121 6 124 3 1 1 17 37 -8.669 -0.026 -5.997 -1.795 -2.809 1.751 -2.306 D 123 121 6 124 3 0 0 16 36 -6.508 -1.411 -0.706 IL 124 124 3 124 3 1 1 20 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - A - - - ML 125 124 3 127 3 1 1 16 36 -8.671 -0.013 -7.325 1.151 -0.895 -1.380 -0.223 D 126 124 3 127 3 0 0 15 35 -6.483 -1.996 -0.438 IL 127 127 3 127 3 1 1 19 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - A - - - ML 128 127 3 130 3 1 1 15 35 -6.318 -0.027 -7.325 1.595 -2.468 -0.838 -2.065 D 129 127 3 130 3 0 0 14 34 -6.483 -1.996 -0.438 IL 130 130 3 130 3 1 1 19 39 -1.326 -0.862 -4.298 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - A - - - ML 131 130 3 133 2 1 1 1 1 * 0.000 1.900 -3.766 -3.274 -3.447 D 132 130 3 133 2 0 0 0 0 * 0.000 IL 133 133 3 133 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 134 133 3 -1 0 0 0 0 0 [ BEGR 39 ] - - - - - - S 135 54 1 136 3 0 3 94 157 -8.693 -0.012 -7.347 IL 136 136 2 136 3 1 2 96 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - A - - - ML 137 136 2 139 3 1 4 94 157 -8.693 -0.012 -7.347 1.903 -3.808 -3.313 -3.492 D 138 136 2 139 3 0 0 92 155 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 2 95 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - A - - - ML 140 139 3 142 5 1 3 93 156 -7.748 -0.025 -7.563 -7.775 -8.667 1.903 -3.808 -3.313 -3.492 D 141 139 3 142 5 0 0 91 154 -4.959 -0.803 -4.221 -2.596 -2.508 IL 142 142 3 142 5 1 1 93 156 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 47 130 A U - - MP 143 142 3 147 6 2 4 92 155 -9.453 -9.392 -0.017 -8.168 -8.448 -8.843 -4.821 -1.211 -4.737 3.718 -6.069 -6.898 -1.784 -4.805 -4.687 -0.011 -5.297 -1.036 -1.960 -5.747 -3.644 -3.593 ML 144 142 3 147 6 1 1 90 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 3 147 6 1 1 90 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 3 147 6 0 0 86 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 91 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 91 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 48 129 g c - - MP 149 148 6 153 6 2 4 90 153 -9.453 -9.392 -0.017 -8.168 -8.448 -8.843 -3.477 -2.109 -3.617 1.595 -4.202 -4.240 0.030 -3.933 -1.407 2.360 -3.895 2.145 -0.236 -3.652 -1.824 -2.541 ML 150 148 6 153 6 1 1 88 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 88 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 85 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 89 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 89 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 49 128 C G - - MP 155 154 6 159 6 2 3 88 151 -9.453 -9.392 -0.017 -8.168 -8.448 -8.843 -5.213 -5.248 -4.773 -1.368 -3.299 -5.085 3.619 -4.157 -4.824 -1.228 -5.044 -3.248 0.878 -5.195 -0.978 -3.625 ML 156 154 6 159 6 1 1 86 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 86 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 84 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 87 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 87 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 50 127 c g - - MP 161 160 6 165 4 2 2 86 149 -7.720 -6.110 -0.046 -6.341 -2.239 -2.328 -2.381 0.723 -1.408 -3.508 2.374 -2.788 -2.681 0.791 -3.239 -0.917 1.802 -2.810 0.588 -1.752 ML 162 160 6 165 4 1 1 85 148 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 84 147 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 83 146 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 86 149 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 86 148 -1.496 -0.759 -4.196 0.000 0.000 0.000 0.000 [ MATL 46 ] 51 - A - - - ML 167 166 6 169 5 1 1 84 147 -5.741 -0.287 -2.736 -6.738 -8.667 1.021 -1.291 -0.870 0.021 D 168 166 6 169 5 0 0 82 145 -4.959 -0.803 -4.221 -2.596 -2.508 IL 169 169 3 169 5 1 1 84 147 -2.327 -0.501 -4.213 -6.045 -5.319 0.000 0.000 0.000 0.000 [ MATP 47 ] 54 125 c g - - MP 170 169 3 174 6 2 2 83 146 -9.321 -9.260 -0.018 -8.037 -8.316 -8.711 -2.531 -2.809 -2.469 0.924 -2.038 -3.769 2.609 -2.943 -2.930 1.030 -3.473 -0.932 1.580 -3.082 -0.153 -1.924 ML 171 169 3 174 6 1 1 82 145 -0.841 -7.875 -2.313 -2.284 -7.725 -5.254 -0.018 0.158 -0.930 0.456 MR 172 169 3 174 6 1 1 81 144 -7.046 -5.775 -1.511 -5.753 -0.887 -3.967 0.541 -0.504 -0.213 -0.033 D 173 169 3 174 6 0 0 78 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 82 145 -3.572 -3.835 -0.332 -5.490 -6.267 -5.927 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 82 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 56 124 g c - - MP 176 175 6 180 6 2 2 81 144 -9.453 -9.392 -0.028 -8.168 -6.593 -8.843 -3.519 -2.917 -3.514 0.983 -2.782 -4.248 1.980 -3.621 -3.631 2.569 -4.071 -0.704 0.978 -3.564 -0.820 -2.432 ML 177 175 6 180 6 1 1 79 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 79 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 76 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 80 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 80 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 57 123 G C - - MP 182 181 6 186 4 2 2 79 142 -7.567 -8.812 -0.049 -5.266 -4.099 -2.794 -4.015 1.036 -4.829 -4.514 -0.121 -4.557 -2.412 3.360 -4.509 -0.305 -0.136 -3.873 -2.113 -2.971 ML 183 181 6 186 4 1 1 78 141 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 78 141 -4.419 -12.846 -0.305 -2.802 0.477 -0.475 -0.331 0.130 D 185 181 6 186 4 0 0 76 138 -12.737 -14.007 -2.036 -0.404 IL 186 186 5 186 4 1 1 78 141 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 78 141 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 122 - G - - MR 188 187 6 190 3 1 1 77 140 -9.046 -0.012 -7.364 -2.995 -4.383 1.907 -3.735 D 189 187 6 190 3 0 0 75 138 -6.390 -1.568 -0.620 IR 190 190 3 190 3 1 1 77 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 121 - A - - MR 191 190 3 193 5 1 1 76 139 -7.748 -0.025 -7.563 -7.775 -8.667 1.269 -1.065 -1.023 -0.689 D 192 190 3 193 5 0 0 74 137 -5.352 -0.707 -2.978 -4.409 -2.404 IR 193 193 3 193 5 1 1 76 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 58 120 g c - - MP 194 193 3 198 6 2 2 75 138 -9.453 -9.392 -0.017 -8.168 -8.448 -8.843 -1.866 -1.431 -2.717 1.314 -2.889 -3.052 0.805 -2.161 -1.684 2.208 -2.815 1.564 0.536 -2.642 -0.856 -1.762 ML 195 193 3 198 6 1 1 73 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 196 193 3 198 6 1 1 73 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 197 193 3 198 6 0 0 70 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 198 198 5 198 6 1 1 74 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 199 199 6 199 5 1 1 74 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 59 119 u a - - MP 200 199 6 204 6 2 2 73 136 -9.453 -9.392 -0.017 -8.168 -8.448 -8.843 -2.856 -2.584 -2.981 0.940 -2.544 -3.140 2.077 -3.029 -2.993 1.284 -3.534 -0.953 2.227 -3.123 -0.303 -1.991 ML 201 199 6 204 6 1 1 72 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 202 199 6 204 6 1 1 71 134 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 203 199 6 204 6 0 0 68 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 204 204 5 204 6 1 1 72 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 205 205 6 205 5 1 1 72 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 60 118 C G - - MP 206 205 6 210 4 2 2 71 134 -7.720 -7.927 -0.263 -2.664 -5.294 -5.351 -4.843 -1.475 -3.362 -5.142 3.657 -4.232 -4.904 -1.334 -5.110 -3.377 0.322 -5.270 -0.234 -3.706 ML 207 205 6 210 4 1 1 70 133 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 208 205 6 210 4 1 1 69 132 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 209 205 6 210 4 0 0 68 130 -4.568 -4.250 -2.265 -0.520 IL 210 210 5 210 4 1 1 71 134 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 211 211 6 211 3 1 1 71 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 61 - U - - - ML 212 211 6 214 3 1 1 69 132 -8.477 -0.014 -7.131 -1.335 -1.250 -2.046 1.556 D 213 211 6 214 3 0 0 66 128 -7.822 -3.335 -0.158 IL 214 214 3 214 3 1 1 70 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 62 - A - - - ML 215 214 3 217 3 1 1 68 131 -6.701 -0.024 -7.131 1.208 -1.227 -0.765 -0.567 D 216 214 3 217 3 0 0 65 128 -7.822 -2.850 -0.223 IL 217 217 3 217 3 1 1 69 132 -1.474 -0.774 -4.174 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - A - - - ML 218 217 3 220 3 1 1 67 130 -8.491 -0.026 -6.028 1.403 -0.999 -1.656 -0.896 D 219 217 3 220 3 0 0 64 127 -7.764 -3.277 -0.165 IL 220 220 3 220 3 1 1 68 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - g - - - ML 221 220 3 223 3 1 1 66 129 -8.840 -0.034 -5.565 0.381 -1.027 0.589 -0.509 D 222 220 3 223 3 0 0 64 127 -6.815 -1.721 -0.540 IL 223 223 3 223 3 1 1 67 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 59 ] - 117 - u - - MR 224 223 3 226 3 1 1 66 128 -8.836 -0.013 -7.154 0.151 -0.524 -0.720 0.666 D 225 223 3 226 3 0 0 63 125 -7.886 -2.771 -0.236 IR 226 226 3 226 3 1 1 66 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 60 ] - 116 - A - - MR 227 226 3 229 3 1 1 65 127 -8.845 -0.064 -4.606 1.321 -1.374 -1.139 -0.597 D 228 226 3 229 3 0 0 62 125 -7.847 -2.765 -0.237 IR 229 229 3 229 3 1 1 65 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 61 ] - 115 - u - - MR 230 229 3 232 5 1 1 64 126 -7.517 -0.029 -7.332 -7.544 -8.436 -0.283 -0.462 -0.768 0.899 D 231 229 3 232 5 0 0 62 125 -6.466 -0.483 -4.092 -5.523 -2.374 IR 232 232 3 232 5 1 1 64 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 66 114 g c - - MP 233 232 3 237 6 2 2 63 125 -9.428 -9.367 -0.017 -8.144 -8.423 -8.818 -2.239 -1.995 -2.763 1.167 -2.822 -3.544 1.548 -3.102 -2.568 2.470 -3.389 -0.222 1.081 -2.829 -0.731 -1.484 ML 234 232 3 237 6 1 1 60 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 235 232 3 237 6 1 1 60 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 236 232 3 237 6 0 0 56 119 -9.497 -8.196 -3.186 -4.675 -4.692 -0.309 IL 237 237 5 237 6 1 1 62 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 238 238 6 238 5 1 1 62 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 67 113 c g - - MP 239 238 6 243 6 2 2 61 123 -9.432 -8.190 -0.044 -8.148 -8.428 -5.744 -2.388 -2.472 -2.549 0.996 -2.284 -3.393 2.101 -1.344 -2.212 1.368 -3.138 -0.573 1.781 -2.691 -0.014 -1.669 ML 240 238 6 243 6 1 1 58 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 241 238 6 243 6 1 1 58 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 242 238 6 243 6 0 0 53 116 -9.428 -8.126 -3.923 -4.605 -4.623 -0.239 IL 243 243 5 243 6 1 1 60 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 244 244 6 244 5 1 1 60 122 -2.429 -0.488 -5.940 -4.108 -5.214 0.000 0.000 0.000 0.000 [ MATP 64 ] 68 111 c g - - MP 245 244 6 249 6 2 2 59 121 -9.408 -9.348 -0.121 -8.124 -8.404 -3.824 -1.422 -1.764 -1.408 1.410 -1.643 -2.760 1.664 -2.247 -1.869 1.317 -2.547 -0.314 1.588 -1.833 -0.032 -1.165 ML 246 244 6 249 6 1 1 56 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 247 244 6 249 6 1 1 56 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 248 244 6 249 6 0 0 51 114 -9.771 -8.469 -4.266 -4.948 -4.966 -0.185 IL 249 249 5 249 6 1 1 58 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 250 250 6 250 5 1 1 58 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 69 110 c g - - MP 251 250 6 255 4 2 2 57 120 -1.569 -4.045 -0.768 -6.041 -1.464 -1.578 -1.607 1.438 -1.777 -2.224 1.604 -1.738 -1.578 1.173 -2.426 -0.234 1.499 -1.929 0.125 -0.701 ML 252 250 6 255 4 1 1 53 116 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 253 250 6 255 4 1 1 52 115 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 254 250 6 255 4 0 0 50 112 -6.124 -4.271 -0.910 -1.316 IL 255 255 5 255 4 1 1 58 121 -1.872 -1.705 -1.283 -6.748 0.000 0.000 0.000 0.000 IR 256 256 6 256 3 1 1 59 122 -0.423 -2.039 -6.495 0.000 0.000 0.000 0.000 [ MATL 66 ] 73 - u - - - ML 257 256 6 259 3 1 1 16 34 -8.627 -0.019 -6.547 0.115 -0.727 0.144 0.273 D 258 256 6 259 3 0 0 15 34 -6.929 -1.383 -0.717 IL 259 259 3 259 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 74 - a - - - ML 260 259 3 262 3 1 1 14 33 -8.654 -0.030 -5.788 0.528 -0.566 -0.742 0.361 D 261 259 3 262 3 0 0 14 33 -6.673 -1.933 -0.457 IL 262 262 3 262 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 75 - a - - - ML 263 262 3 265 3 1 1 13 31 -8.643 -0.125 -3.637 0.593 -0.590 -0.394 0.093 D 264 262 3 265 3 0 0 13 31 -6.787 -1.548 -0.624 IL 265 265 3 265 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 76 - a - - - ML 266 265 3 268 2 1 1 1 1 * 0.000 0.790 -0.804 -0.468 -0.037 D 267 265 3 268 2 0 0 0 0 * 0.000 IL 268 268 3 268 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 269 268 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME c-di-GMP-I ACC RF01051 DESC c-di-GMP-I riboswitch aptamer LENG 87 MAXL 178 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 10:41:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01051/CM NSEQ 155 EFFN 13.760223 CKSUM 4098006892 STATS LOCAL MSV -9.1263 0.71862 STATS LOCAL VITERBI -9.7136 0.71862 STATS LOCAL FORWARD -3.6701 0.71862 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17188 1.49648 1.28714 1.65946 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 0.00000 * 1 1.42220 1.32360 1.88433 1.07673 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 2 1.10804 1.35835 2.08445 1.24363 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 3 0.99786 1.58369 1.64500 1.45627 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 4 1.32972 1.14123 2.07412 1.23665 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 5 1.80282 1.76612 0.69323 1.80660 5 g - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 6 0.85846 1.83631 1.78226 1.39221 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 7 0.70349 2.10924 1.93981 1.42678 7 a - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 8 0.33440 1.94425 3.04724 2.36822 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 9 0.34994 2.49519 3.02670 1.80600 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 10 0.83329 2.30692 1.28695 1.66230 10 a - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 11 2.68780 4.85437 0.09152 4.45379 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 12 3.81801 2.75481 0.10176 4.49509 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 13 4.66726 0.11715 4.56745 2.39948 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 14 0.08401 3.69398 3.52471 3.64013 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 15 0.12384 2.74494 3.90781 3.43750 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 16 0.13422 3.23628 3.01722 3.28721 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 17 1.93106 0.60267 2.28618 1.57985 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 18 2.83501 0.67536 2.65175 1.01671 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 19 1.43005 1.36132 1.68441 1.14310 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.02003 5.11334 4.28206 1.46634 0.26236 1.09861 0.40547 20 1.33791 1.80649 1.07259 1.46422 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.02476 3.99554 5.10551 0.56487 0.84033 1.45774 0.26496 21 2.23472 1.42382 1.54120 0.82540 22 u - - < 1.38629 1.38629 1.38629 1.38629 0.01943 4.32925 5.10551 0.75510 0.63481 1.45774 0.26496 22 2.11471 0.98375 1.50201 1.26322 24 c - - < 1.38629 1.38629 1.38629 1.38629 0.03285 4.34141 3.94767 0.76303 0.62783 1.45774 0.26496 23 3.22821 3.74565 0.09973 3.45253 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02423 5.09219 4.02872 1.46634 0.26236 0.71077 0.67583 24 0.41516 2.24812 2.96848 1.69943 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01234 5.09395 5.09395 1.46634 0.26236 1.82336 0.17612 25 0.18327 4.26811 1.98195 4.15765 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02505 3.98420 5.09395 1.19506 0.36052 1.82336 0.17612 26 0.01683 5.42137 5.01547 5.17903 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02827 3.82853 5.09395 0.49226 0.94479 0.75989 0.63058 27 1.68745 1.66658 0.75810 1.84793 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.01220 5.10551 5.10551 1.46634 0.26236 1.45774 0.26496 28 1.19201 1.66417 0.99633 1.98188 35 g - - > 1.38629 1.38629 1.38629 1.38629 0.01220 5.10551 5.10551 1.46634 0.26236 1.45774 0.26496 29 1.92183 1.24491 1.40201 1.14071 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.01220 5.10551 5.10551 1.46634 0.26236 0.62647 0.76459 30 1.27413 2.07068 1.23169 1.19592 37 u - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 31 1.13991 2.98849 0.58270 2.63948 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 32 1.78671 2.41820 0.54928 1.79552 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 33 3.10437 3.68255 0.11868 3.17261 40 G - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 34 0.26229 2.98274 2.35197 2.46658 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 35 4.74038 0.04685 5.09441 3.47679 42 C - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 36 2.82926 4.68426 0.08392 4.40647 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 37 4.62131 0.11227 2.72321 3.48365 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 38 0.01640 5.44840 5.04111 5.20326 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 39 0.01640 5.44840 5.04111 5.20326 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 40 0.05828 5.05444 3.19408 4.68570 47 A - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 41 1.58847 4.03206 0.27998 3.80655 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 42 4.64415 0.13505 4.54422 2.24353 49 C - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 43 2.34578 0.83110 2.27993 1.00413 50 c - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 44 0.51825 2.96026 2.21599 1.41228 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.03804 3.69423 4.38518 0.65725 0.73038 1.09861 0.40547 45 1.94621 0.71479 2.10428 1.40260 54 c - - < 1.38629 1.38629 1.38629 1.38629 0.21809 1.66131 5.10687 0.06260 2.80218 0.67579 0.71081 46 2.17776 1.24811 0.73351 2.12497 56 g - - < 1.38629 1.38629 1.38629 1.38629 0.02970 5.11334 3.76154 1.46634 0.26236 1.09861 0.40547 47 2.17922 3.40141 0.22672 2.87534 57 G - - < 1.38629 1.38629 1.38629 1.38629 0.01232 5.09596 5.09596 1.46634 0.26236 0.41709 1.07575 48 1.66079 2.63095 0.39332 2.76160 58 G - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 49 2.15271 1.23428 1.83277 0.83744 59 u - - < 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 50 4.64729 0.11969 4.56049 2.37776 60 C - - < 1.38629 1.38629 1.38629 1.38629 0.20294 5.11334 1.72788 1.46634 0.26236 1.09861 0.40547 51 3.08344 2.77113 3.53664 0.14792 61 U - - - 1.38629 1.38629 1.38629 1.38629 0.01463 4.92503 4.92503 1.46634 0.26236 3.45099 0.03223 52 0.37096 2.68444 2.10101 2.12583 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.02352 4.13640 4.92503 0.74711 0.64195 2.47332 0.08807 53 0.24300 2.22889 3.45685 2.56984 64 A - - - 1.38629 1.38629 1.38629 1.38629 0.02522 4.93700 4.03272 1.46634 0.26236 3.39697 0.03405 54 1.11754 2.38224 0.76883 2.14541 65 g - - - 1.38629 1.38629 1.38629 1.38629 0.02921 4.92639 3.83799 1.46634 0.26236 0.23275 1.57192 55 1.86024 1.59829 0.74957 1.77459 66 g - - < 1.38629 1.38629 1.38629 1.38629 0.01260 5.07359 5.07359 1.46634 0.26236 1.48731 0.25616 56 2.06162 1.06273 1.51771 1.17756 67 c - - < 1.38629 1.38629 1.38629 1.38629 0.05232 5.08071 3.10637 1.46634 0.26236 2.12059 0.12779 57 1.39783 1.44690 1.47708 1.24040 68 u - - < 1.38629 1.38629 1.38629 1.38629 0.19455 5.04140 1.77000 1.46634 0.26236 2.67676 0.07127 58 1.39734 1.43321 1.52893 1.21256 69 u - - < 1.38629 1.38629 1.38629 1.38629 0.55052 0.87799 4.86243 0.32484 1.28245 0.32947 1.27049 59 1.36674 2.07232 1.16069 1.18450 73 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01822 5.05643 4.44916 1.46634 0.26236 0.79580 0.60006 60 0.93946 1.90350 2.03830 1.10907 74 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02745 5.07952 3.87030 1.46634 0.26236 1.55747 0.23657 61 0.88951 1.89569 1.66826 1.38488 75 a - - _ 1.38629 1.38629 1.38629 1.38629 0.11047 5.06980 2.31968 1.46634 0.26236 0.96501 0.47962 62 0.71788 2.14781 1.75162 1.50516 76 a - - _ 1.38629 1.38629 1.38629 1.38629 0.63924 1.44731 1.43925 1.85761 0.16966 0.15034 1.96907 63 1.44374 1.70051 1.27436 1.19814 110 u - - > 1.38629 1.38629 1.38629 1.38629 0.03014 4.87699 3.81352 1.46634 0.26236 0.36592 1.18274 64 1.34777 1.61733 1.25634 1.35845 111 g - - > 1.38629 1.38629 1.38629 1.38629 0.01775 4.49791 5.04140 0.92142 0.50742 0.70242 0.68396 65 1.32819 1.69941 1.01777 1.65626 113 g - - > 1.38629 1.38629 1.38629 1.38629 0.01972 5.08071 4.31906 1.46634 0.26236 2.12059 0.12779 66 1.91832 0.82617 1.50552 1.64236 114 c - - > 1.38629 1.38629 1.38629 1.38629 0.19658 5.07359 1.75909 1.46634 0.26236 2.24896 0.11150 67 1.77832 1.80490 1.97980 0.63773 115 U - - - 1.38629 1.38629 1.38629 1.38629 0.02320 4.89214 4.17188 1.46634 0.26236 1.59041 0.22796 68 0.29509 2.89877 2.56964 2.08845 116 A - - - 1.38629 1.38629 1.38629 1.38629 0.02340 4.93100 4.14065 1.46634 0.26236 3.42446 0.03311 69 1.28526 1.88196 1.97657 0.83797 117 u - - - 1.38629 1.38629 1.38629 1.38629 0.01467 4.92227 4.92227 1.46634 0.26236 0.06473 2.76978 70 3.06097 4.70369 0.07030 4.42433 118 G - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 71 0.91069 1.87269 1.16031 2.03522 119 a - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 72 2.51231 1.01023 2.65734 0.72433 120 u - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 73 0.34187 2.37184 2.36423 2.28053 121 A - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 74 4.65938 5.77356 0.01844 5.16935 122 G - - - 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 75 2.71630 0.29009 3.21021 1.92870 123 C - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 76 2.27454 0.76594 1.20304 2.02512 124 c - - > 1.38629 1.38629 1.38629 1.38629 0.23103 5.11334 1.60810 1.46634 0.26236 1.09861 0.40547 77 1.62485 2.18785 0.58976 1.99187 125 G - - > 1.38629 1.38629 1.38629 1.38629 0.03058 3.78761 4.89736 0.56498 0.84018 0.05834 2.87043 78 1.27249 2.39600 0.63893 2.29334 127 G - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 79 2.35521 4.68251 0.12373 4.40209 128 G - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 80 2.94788 1.25732 3.82327 0.44429 129 U - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 81 4.86337 2.75229 4.80951 0.08301 130 U - - > 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 82 1.03684 3.36331 0.54467 3.48107 131 G - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 83 4.08534 0.09868 3.91150 2.86231 132 C - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 84 2.44323 0.22300 3.64665 2.44266 133 C - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 85 1.23119 2.87151 0.59791 2.28784 134 G - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 86 0.63772 2.03630 1.78647 1.75190 135 A - - : 1.38629 1.38629 1.38629 1.38629 0.01210 5.11334 5.11334 1.46634 0.26236 1.09861 0.40547 87 0.60703 2.31076 1.93569 1.55342 136 A - - : 1.38629 1.38629 1.38629 1.38629 0.00607 5.10731 * 1.46634 0.26236 0.00000 * //