INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-484 ACC RF00783 DESC microRNA mir-484 STATES 205 NODES 47 CLEN 67 W 83 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 00:09:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF00783/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 9 EFFN 1.858887 CKSUM 2194901723 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.20 NC 38.30 EFP7GF -10.2977 0.71920 ECMLC 0.63462 -5.93689 3.00981 1600000 350758 0.003421 ECMGC 0.41677 -17.10292 -3.76889 1600000 103639 0.003860 ECMLI 0.63000 -4.02940 4.28893 1600000 226527 0.005297 ECMGI 0.46651 -11.59525 -0.50216 1600000 70718 0.005656 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 104 -6.919 -7.126 -0.232 -2.912 IL 1 1 2 1 4 1 23 87 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 22 84 104 -7.780 -0.023 -6.434 -1.154 -1.210 -1.868 1.508 D 4 2 3 5 3 0 18 82 102 -7.128 -2.641 -0.264 IL 5 5 3 5 3 1 22 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 21 82 103 -8.183 -0.252 -2.675 -1.305 1.482 -2.110 -0.809 D 7 5 3 8 3 0 18 81 101 -6.271 -1.385 -0.727 IL 8 8 3 8 3 1 22 83 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 67 - U - - MR 9 8 3 11 3 1 22 82 102 -7.956 -0.025 -6.274 -0.742 -0.883 -1.422 1.314 D 10 8 3 11 3 0 17 80 100 -7.909 -1.600 -0.586 IR 11 11 3 11 3 1 21 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 66 - u - - MR 12 11 3 14 5 1 21 81 101 -6.847 -0.046 -6.662 -6.874 -7.766 0.017 -0.709 -1.046 0.920 D 13 11 3 14 5 0 16 79 99 -6.122 -0.693 -2.129 -5.179 -3.174 IR 14 14 3 14 5 1 19 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 65 G C - - MP 15 14 3 19 6 2 20 80 100 -9.060 -8.999 -0.022 -7.776 -8.056 -8.451 -3.955 -2.678 -3.998 0.782 -4.534 -4.451 -0.008 -4.324 -3.853 3.334 -4.251 0.487 -0.308 -3.923 -1.993 -2.901 ML 16 14 3 19 6 1 17 78 98 -6.660 -7.007 -0.860 -1.415 -6.856 -4.386 0.076 -0.805 0.624 -0.264 MR 17 14 3 19 6 1 16 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 12 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 18 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 18 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 64 u g - - MP 21 20 6 25 6 2 18 78 98 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -4.037 -3.956 -3.752 -0.296 -2.526 -4.185 1.759 -3.294 -3.792 -0.093 -4.089 -1.959 0.918 -4.128 2.971 -2.665 ML 22 20 6 25 6 1 16 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 14 76 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 12 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 17 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 17 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 63 C G - - MP 27 26 6 31 4 2 16 76 96 -6.919 -7.126 -0.054 -5.540 -3.217 -3.185 -3.242 0.107 -2.583 0.230 3.077 -3.189 -3.281 0.379 -3.705 -1.459 0.875 -3.438 -0.430 -2.304 ML 28 26 6 31 4 1 15 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 13 75 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 11 74 95 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 16 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 15 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - A - - - ML 33 32 6 35 3 1 15 73 93 -8.329 -0.019 -6.647 1.707 -2.317 -1.954 -1.854 D 34 32 6 35 3 0 11 72 92 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 14 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 62 - u - - MR 36 35 3 38 5 1 14 72 92 -7.070 -0.040 -6.885 -7.097 -7.989 -0.101 -0.215 -0.577 0.619 D 37 35 3 38 5 0 9 71 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 12 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 61 g c - - MP 39 38 3 43 6 2 13 71 91 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -3.009 -2.291 -3.097 1.062 -3.358 -3.768 0.664 -3.453 -3.149 2.865 -0.877 0.643 0.404 -3.117 -1.145 -2.148 ML 40 38 3 43 6 1 10 70 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 8 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 5 68 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 11 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 11 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 60 G C - - MP 45 44 6 49 4 2 11 69 89 -6.919 -7.126 -0.054 -5.540 -4.693 -3.071 -4.787 0.233 -5.163 -4.675 -0.540 -5.026 -4.296 3.626 -4.636 -0.768 -0.927 -4.436 -2.575 -3.665 ML 46 44 6 49 4 1 9 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 6 69 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 5 68 88 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 10 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 10 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - C - - - ML 51 50 6 53 3 1 9 67 87 -8.329 -0.019 -6.647 -1.676 1.606 -2.497 -1.103 D 52 50 6 53 3 0 4 66 86 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 8 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 59 - C - - MR 54 53 3 56 5 1 9 66 86 -7.070 -0.040 -6.885 -7.097 -7.989 -0.679 1.053 -0.866 -0.411 D 55 53 3 56 5 0 3 65 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 6 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 58 u a - - MP 57 56 3 61 6 2 8 65 85 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -3.441 -3.409 -3.383 0.222 -2.473 -4.009 1.814 -3.141 -3.403 0.456 -3.826 -1.471 2.644 -3.619 1.168 -2.315 ML 58 56 3 61 6 1 4 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 3 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 1 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 5 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 5 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 57 c g - - MP 63 62 6 67 4 2 7 63 83 -6.919 -7.126 -0.054 -5.540 -3.185 -3.168 -3.174 0.316 -2.382 -3.820 2.849 0.529 -3.196 0.497 -3.632 -1.324 1.197 -3.397 -0.148 -2.165 ML 64 62 6 67 4 1 3 63 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 2 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 1 62 82 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 5 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 4 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - A - - - ML 69 68 6 71 5 1 6 61 80 -7.070 -0.040 -6.885 -7.097 -7.989 1.707 -2.317 -1.954 -1.854 D 70 68 6 71 5 0 0 59 79 -4.959 -0.803 -4.221 -2.596 -2.508 IL 71 71 3 71 5 1 3 61 81 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 56 g c - - MP 72 71 3 76 6 2 7 60 79 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -3.585 -2.449 -3.664 1.068 -4.269 -4.554 0.153 -3.910 -3.547 2.748 -4.008 1.990 -0.131 -3.855 -1.794 -2.516 ML 73 71 3 76 6 1 2 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 2 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 3 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 3 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 55 u g - - MP 78 77 6 82 6 2 7 58 77 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -4.037 -3.956 -3.752 -0.296 -2.526 -4.185 1.759 -3.294 -3.792 -0.093 -4.089 -1.959 0.918 -4.128 2.971 -2.665 ML 79 77 6 82 6 1 2 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 2 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 2 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 3 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 54 C G - - MP 84 83 6 88 6 2 6 56 75 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -4.499 -4.401 -4.198 -0.637 -2.927 -4.616 3.535 -3.732 -4.245 -0.390 -4.512 -2.347 0.593 -4.572 -0.632 -3.087 ML 85 83 6 88 6 1 2 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 2 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 2 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 2 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 53 C G - - MP 90 89 6 94 6 2 6 54 73 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -4.499 -4.401 -4.198 -0.637 -2.927 -4.616 3.535 -3.732 -4.245 -0.390 -4.512 -2.347 0.593 -4.572 -0.632 -3.087 ML 91 89 6 94 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 2 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 2 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 52 C G - - MP 96 95 6 100 6 2 5 52 71 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -4.499 -4.401 -4.198 -0.637 -2.927 -4.616 3.535 -3.732 -4.245 -0.390 -4.512 -2.347 0.593 -4.572 -0.632 -3.087 ML 97 95 6 100 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 2 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 2 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 51 C G - - MP 102 101 6 106 6 2 4 50 69 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -4.499 -4.401 -4.198 -0.637 -2.927 -4.616 3.535 -3.732 -4.245 -0.390 -4.512 -2.347 0.593 -4.572 -0.632 -3.087 ML 103 101 6 106 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 2 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 2 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 50 u a - - MP 108 107 6 112 4 2 3 48 67 -6.919 -7.126 -0.054 -5.540 -2.315 -2.385 -2.446 0.850 -2.125 -3.241 1.722 -2.593 -2.493 1.015 -3.022 -0.742 1.730 -0.933 1.447 -1.575 ML 109 107 6 112 4 1 1 48 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 47 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 46 66 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 49 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - C - - - ML 114 113 6 116 3 1 2 45 65 -7.937 -0.021 -6.591 -1.676 1.606 -2.497 -1.103 D 115 113 6 116 3 0 0 44 63 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - C - - - ML 117 116 3 119 3 1 2 44 63 -7.937 -0.021 -6.591 -1.676 1.606 -2.497 -1.103 D 118 116 3 119 3 0 0 43 62 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - C - - - ML 120 119 3 122 3 1 1 43 62 -8.329 -0.019 -6.647 -1.676 1.606 -2.497 -1.103 D 121 119 3 122 3 0 0 42 61 -5.620 -0.734 -1.403 IL 122 122 3 122 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 49 - C - - MR 123 122 3 125 3 1 1 42 61 -8.329 -0.019 -6.647 -0.992 1.182 -1.806 -0.085 D 124 122 3 125 3 0 0 40 60 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 48 - C - - MR 126 125 3 128 5 1 1 41 60 -7.070 -0.040 -6.885 -7.097 -7.989 -1.676 1.606 -2.497 -1.103 D 127 125 3 128 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 47 G C - - MP 129 128 3 133 6 2 2 40 59 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -4.693 -3.071 -4.787 0.233 -5.163 -4.675 -0.540 -5.026 -4.296 3.626 -4.636 -0.768 -0.927 -4.436 -2.575 -3.665 ML 130 128 3 133 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 46 a u - - MP 135 134 6 139 4 2 2 38 57 -6.919 -7.126 -0.054 -5.540 -0.428 -2.323 -2.810 2.693 -2.905 -3.765 0.878 -3.058 -2.839 1.444 -3.377 -0.239 0.616 -3.026 -0.855 -1.885 ML 136 134 6 139 4 1 1 38 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - U - - - ML 141 140 6 143 5 1 1 35 55 -7.070 -0.040 -6.885 -7.097 -7.989 -1.436 -1.441 -2.167 1.604 D 142 140 6 143 5 0 0 34 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 143 143 3 143 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 45 A U - - MP 144 143 3 148 6 2 2 34 54 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -3.750 -2.792 -3.771 3.304 -4.089 -5.147 0.208 -3.816 -3.665 1.123 -4.210 -0.275 -0.209 -4.342 -1.733 -2.608 ML 145 143 3 148 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 44 a u - - MP 150 149 6 154 4 2 2 32 52 -6.919 -7.126 -0.054 -5.540 -2.954 0.301 -3.067 2.652 -3.376 -4.103 0.575 -3.320 -3.046 1.706 -3.575 -0.007 0.326 -3.323 -1.211 -2.050 ML 151 149 6 154 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 34 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 156 155 6 158 3 1 1 30 49 -7.937 -0.021 -6.591 1.707 -2.317 -1.954 -1.854 D 157 155 6 158 3 0 0 29 48 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - C - - - ML 159 158 3 161 3 1 1 29 47 -8.329 -0.019 -6.647 -1.676 1.606 -2.497 -1.103 D 160 158 3 161 3 0 0 27 46 -5.620 -0.734 -1.403 IL 161 161 3 161 3 1 1 30 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 43 - C - - MR 162 161 3 164 3 1 1 28 46 -8.329 -0.019 -6.647 -0.774 1.147 -1.065 -0.470 D 163 161 3 164 3 0 0 26 45 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 42 - a - - MR 165 164 3 167 5 1 1 27 45 -7.070 -0.040 -6.885 -7.097 -7.989 0.984 -1.004 -1.088 0.073 D 166 164 3 167 5 0 0 25 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 167 167 3 167 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 30 41 C G - - MP 168 167 3 172 6 2 2 26 44 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -4.499 -4.401 -4.198 -0.637 -2.927 -4.616 3.535 -3.732 -4.245 -0.390 -4.512 -2.347 0.593 -4.572 -0.632 -3.087 ML 169 167 3 172 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 3 172 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 3 172 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 31 40 c g - - MP 174 173 6 178 6 2 2 24 42 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -3.690 -3.669 -3.541 0.014 -2.453 -4.072 2.837 -3.182 -3.566 0.234 -3.934 -1.722 1.151 -3.819 1.654 -2.450 ML 175 173 6 178 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 32 39 C G - - MP 180 179 6 184 6 2 2 22 40 -9.096 -9.036 -0.021 -7.812 -8.092 -8.487 -4.499 -4.401 -4.198 -0.637 -2.927 -4.616 3.535 -3.732 -4.245 -0.390 -4.512 -2.347 0.593 -4.572 -0.632 -3.087 ML 181 179 6 184 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 184 184 5 184 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 33 38 u a - - MP 186 185 6 190 4 2 2 20 38 -6.919 -7.126 -0.054 -5.540 -0.652 -2.577 -2.687 0.744 -2.336 -3.495 1.602 -2.801 -2.723 0.939 -3.251 -0.820 2.556 -2.850 -0.238 -1.773 ML 187 185 6 190 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 189 185 6 190 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 190 190 5 190 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 191 191 6 191 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - A - - - ML 192 191 6 194 3 1 1 16 35 -7.937 -0.021 -6.591 1.707 -2.317 -1.954 -1.854 D 193 191 6 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - A - - - ML 195 194 3 197 3 1 1 15 33 -7.937 -0.021 -6.591 1.707 -2.317 -1.954 -1.854 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 36 - A - - - ML 198 197 3 200 3 1 1 13 31 -7.937 -0.021 -6.591 1.707 -2.317 -1.954 -1.854 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 37 - U - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -1.436 -1.441 -2.167 1.604 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-484 ACC RF00783 DESC microRNA mir-484 LENG 67 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 00:09:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF00783/CM NSEQ 9 EFFN 2.755371 CKSUM 2194901723 STATS LOCAL MSV -8.5337 0.71920 STATS LOCAL VITERBI -8.9159 0.71920 STATS LOCAL FORWARD -3.2032 0.71920 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58558 1.13494 1.36708 1.51922 1.38629 1.38629 1.38629 1.38629 0.17025 3.92758 1.98881 1.46634 0.26236 0.00000 * 1 2.53856 2.51475 3.05294 0.23204 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04563 3.80297 3.80297 1.46634 0.26236 2.19168 0.11848 2 2.75358 0.22107 3.32848 2.31475 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04563 3.80297 3.80297 1.46634 0.26236 0.25290 1.49853 3 2.17711 2.88252 0.26777 2.72494 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 4 3.02726 1.67173 2.88254 0.34582 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 5 2.66163 0.38276 2.45851 1.81631 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 6 0.12623 3.42969 3.13547 3.15338 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 7 1.94979 2.41818 0.40741 2.27069 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 8 2.70850 3.43144 0.14317 3.36931 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 9 3.07691 0.16035 3.65187 2.57557 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 10 2.61843 1.55353 2.39564 0.47085 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 11 2.62038 0.42020 2.41821 1.70798 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 12 0.12623 3.42969 3.13547 3.15338 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 13 2.01307 2.85261 0.29960 2.69391 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 14 3.11293 1.67200 2.92571 0.33683 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 15 3.39426 0.19707 3.19125 2.26165 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 16 3.39240 0.19723 3.19032 2.26132 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 17 3.39086 0.19737 3.18954 2.26104 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 18 3.38958 0.19748 3.18890 2.26080 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 19 2.03575 1.51773 1.87623 0.69908 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 20 3.07691 0.16035 3.65187 2.57557 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 21 3.07691 0.16035 3.65187 2.57557 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 22 3.07691 0.16035 3.65187 2.57557 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 23 2.70860 3.43157 0.14315 3.36949 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 24 0.54366 2.29020 1.60800 2.13839 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 25 2.79004 2.72372 3.31408 0.17843 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 26 0.27089 3.01196 2.00297 2.93425 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 27 0.49666 2.58073 1.49078 2.40211 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 28 0.12623 3.42969 3.13547 3.15338 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 29 3.07691 0.16035 3.65187 2.57557 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 30 3.39317 0.19716 3.19070 2.26146 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 31 2.81217 0.68616 2.59863 1.01598 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 32 3.39434 0.19706 3.19129 2.26167 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 33 1.82155 1.61463 1.94975 0.69926 33 u - - < 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 34 0.12623 3.42969 3.13547 3.15338 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 35 0.12623 3.42969 3.13547 3.15338 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 36 0.12623 3.42969 3.13547 3.15338 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 37 2.79004 2.72372 3.31408 0.17843 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 38 0.69496 2.12566 1.43852 1.93604 38 a - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 39 2.54299 3.36111 0.16942 3.15790 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 40 2.02339 2.76275 0.31645 2.57778 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 41 2.54722 3.36728 0.16841 3.16511 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 42 0.63523 2.20873 2.27922 1.35487 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 43 2.21711 0.43759 2.27612 1.94628 43 C - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 44 2.61787 1.29499 2.37726 0.57922 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 45 3.14403 2.31728 2.81500 0.22509 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 46 1.88286 1.83895 2.09414 0.56972 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 47 3.58477 0.16883 3.28025 2.40812 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 48 3.07691 0.16035 3.65187 2.57557 48 C - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 49 2.35570 0.44658 2.94824 1.54679 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 50 1.38120 1.81178 0.84973 1.84624 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 51 2.53889 3.35516 0.17040 3.15095 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 52 2.53912 3.35549 0.17034 3.15134 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 53 2.53920 3.35560 0.17032 3.15147 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 54 2.53892 3.35520 0.17039 3.15100 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 55 2.23324 3.10181 0.23603 2.84562 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 56 2.90722 0.82860 2.65301 0.82492 56 u - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 57 1.97430 2.58920 0.55285 1.55708 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 58 0.76775 2.56493 1.00065 2.39273 58 a - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 59 2.11924 0.50394 2.09382 1.88049 59 C - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 60 3.57525 0.16952 3.27592 2.40635 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 61 2.51437 0.64176 1.90895 1.40860 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 62 1.49413 1.52728 1.79612 0.93525 62 u - - - 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 63 2.08359 1.68715 0.50138 2.46774 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.04018 3.92758 3.92758 1.46634 0.26236 1.09861 0.40547 64 2.23130 3.09866 0.23674 2.84214 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.11544 3.92758 2.41540 1.46634 0.26236 1.09861 0.40547 65 3.02088 0.36742 2.74758 1.63659 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.18424 3.85540 1.91662 1.46634 0.26236 1.87742 0.16604 66 1.42037 1.98081 2.24096 0.66541 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.17364 3.72080 2.00108 1.46634 0.26236 2.52468 0.08347 67 2.15131 2.19706 2.64377 0.35461 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.02840 3.57555 * 1.46634 0.26236 0.00000 * //