INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-299 ACC RF00756 DESC microRNA mir-299 STATES 193 NODES 39 CLEN 63 W 78 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 00:05:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF00756/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 14 EFFN 1.712402 CKSUM 605754274 NULL 0.000 0.000 0.000 0.000 GA 67.00 TC 67.50 NC 65.50 EFP7GF -9.2033 0.71947 ECMLC 0.66140 -4.60260 3.95575 1600000 344747 0.003481 ECMGC 0.50709 -11.89381 0.53562 1600000 218456 0.001831 ECMLI 0.66570 -3.04026 5.04014 1600000 260200 0.004612 ECMGI 0.55248 -7.48846 3.33490 1600000 158127 0.002530 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 97 -6.856 -7.063 -0.207 -3.085 IL 1 1 2 1 4 1 1 82 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 1 78 97 -8.152 -0.022 -6.470 1.606 -1.938 -1.613 -1.440 D 4 2 3 5 3 0 0 76 96 -6.173 -0.758 -1.341 IL 5 5 3 5 3 1 1 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - U - - MR 6 5 3 8 5 1 1 77 96 -6.971 -0.111 -6.787 -4.244 -7.891 -0.570 -0.849 -0.888 1.158 D 7 5 3 8 5 0 0 75 95 -5.561 -0.916 -3.188 -4.619 -1.744 IR 8 8 3 8 5 1 1 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 62 A U - - MP 9 8 3 13 6 2 2 76 95 -9.022 -8.961 -0.022 -7.738 -8.017 -8.412 -3.457 -2.579 -3.496 3.058 -3.671 -4.709 0.610 -3.556 -3.405 1.443 -3.936 -0.116 0.189 -3.951 -1.334 -2.353 ML 10 8 3 13 6 1 1 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 74 94 -7.280 -6.009 -1.158 -5.987 -1.121 -4.201 0.853 -0.730 -0.459 -0.211 D 12 8 3 13 6 0 0 72 91 -9.369 -8.068 -3.865 -4.547 -4.564 -0.250 IL 13 13 5 13 6 1 1 76 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 61 G C - - MP 15 14 6 19 6 2 2 74 93 -9.051 -8.991 -0.022 -7.767 -8.047 -8.442 -3.486 -2.583 -3.552 0.825 -3.754 -4.086 0.466 -3.855 -1.276 3.220 -3.937 -0.376 0.150 -3.517 -1.436 -2.554 ML 16 14 6 19 6 1 1 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 70 89 -9.369 -8.068 -3.865 -4.547 -4.564 -0.250 IL 19 19 5 19 6 1 1 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 60 a u - - MP 21 20 6 25 6 2 2 72 91 -9.051 -8.991 -0.022 -7.767 -8.047 -8.442 -1.018 -2.370 -2.872 2.740 -2.962 -3.825 0.897 -3.109 -2.914 1.485 -3.445 -0.262 0.618 -3.089 -0.873 -1.937 ML 22 20 6 25 6 1 1 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 69 88 -9.369 -8.068 -3.865 -4.547 -4.564 -0.250 IL 25 25 5 25 6 1 1 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 59 a u - - MP 27 26 6 31 4 2 2 70 89 -6.796 -7.003 -0.059 -5.417 -1.018 -2.370 -2.872 2.740 -2.962 -3.825 0.897 -3.109 -2.914 1.485 -3.445 -0.262 0.618 -3.089 -0.873 -1.937 ML 28 26 6 31 4 1 1 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 1 70 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 0 69 88 -4.870 -4.551 -2.567 -0.407 IL 31 31 5 31 4 1 1 72 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 1 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 33 32 6 35 3 1 1 67 86 -8.224 -0.020 -6.541 1.371 -1.541 -0.794 -1.022 D 34 32 6 35 3 0 0 66 85 -5.884 -0.998 -1.052 IL 35 35 3 35 3 1 1 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 58 - C - - MR 36 35 3 38 5 1 1 66 85 -6.971 -0.043 -6.787 -6.999 -7.891 -0.966 1.226 -1.770 -0.225 D 37 35 3 38 5 0 0 65 84 -5.561 -0.916 -3.188 -4.619 -1.744 IR 38 38 3 38 5 1 1 67 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 57 u g - - MP 39 38 3 43 6 2 2 65 84 -9.051 -8.991 -0.022 -7.767 -8.047 -8.442 -2.956 -3.023 -2.967 0.418 -0.594 -3.640 1.898 -2.858 -3.003 0.551 -3.460 -1.269 1.562 -3.180 2.093 -1.996 ML 40 38 3 43 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 1 64 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 0 62 81 -9.369 -8.068 -1.900 -4.547 -4.564 -0.640 IL 43 43 5 43 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 56 G C - - MP 45 44 6 49 6 2 2 63 82 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.579 -3.017 -4.665 0.307 -5.004 -4.629 -0.408 -4.895 -4.220 3.597 -4.569 -0.710 -0.798 -4.361 -2.437 -3.544 ML 46 44 6 49 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 62 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 55 G C - - MP 51 50 6 55 6 2 2 61 80 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.579 -3.017 -4.665 0.307 -5.004 -4.629 -0.408 -4.895 -4.220 3.597 -4.569 -0.710 -0.798 -4.361 -2.437 -3.544 ML 52 50 6 55 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 60 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 54 U A - - MP 57 56 6 61 6 2 2 59 78 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.016 -3.835 -3.873 -0.143 -2.853 -4.453 1.471 -3.536 -3.880 0.138 -4.261 -1.739 3.238 -4.173 -0.534 -2.721 ML 58 56 6 61 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 58 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 53 U A - - MP 63 62 6 67 6 2 2 57 76 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.016 -3.835 -3.873 -0.143 -2.853 -4.453 1.471 -3.536 -3.880 0.138 -4.261 -1.739 3.238 -4.173 -0.534 -2.721 ML 64 62 6 67 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 56 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 52 U A - - MP 69 68 6 73 6 2 2 55 74 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.016 -3.835 -3.873 -0.143 -2.853 -4.453 1.471 -3.536 -3.880 0.138 -4.261 -1.739 3.238 -4.173 -0.534 -2.721 ML 70 68 6 73 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 54 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 51 A U - - MP 75 74 6 79 6 2 2 53 72 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -3.654 -2.722 -3.682 3.235 -3.953 -5.004 0.338 -3.733 -3.580 1.227 -4.121 -0.221 -0.080 -4.214 -1.604 -2.525 ML 76 74 6 79 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 52 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 50 C G - - MP 81 80 6 85 6 2 2 51 70 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.380 -4.270 -4.098 -0.519 -2.854 -4.532 3.495 -3.647 -4.142 -0.253 -4.421 -2.216 0.676 -4.460 -0.557 -2.988 ML 82 80 6 85 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 49 C G - - MP 87 86 6 91 6 2 2 49 68 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.380 -4.270 -4.098 -0.519 -2.854 -4.532 3.495 -3.647 -4.142 -0.253 -4.421 -2.216 0.676 -4.460 -0.557 -2.988 ML 88 86 6 91 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 48 G C - - MP 93 92 6 97 6 2 2 47 66 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.098 -2.752 -4.145 0.685 -4.704 -4.503 -0.142 -4.476 -3.954 3.409 -4.340 0.279 -0.443 -4.020 -2.137 -3.045 ML 94 92 6 97 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 47 U A - - MP 99 98 6 103 6 2 2 45 64 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.016 -3.835 -3.873 -0.143 -2.853 -4.453 1.471 -3.536 -3.880 0.138 -4.261 -1.739 3.238 -4.173 -0.534 -2.721 ML 100 98 6 103 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 46 C G - - MP 105 104 6 109 6 2 2 43 62 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.380 -4.270 -4.098 -0.519 -2.854 -4.532 3.495 -3.647 -4.142 -0.253 -4.421 -2.216 0.676 -4.460 -0.557 -2.988 ML 106 104 6 109 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 45 C G - - MP 111 110 6 115 6 2 2 41 60 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.380 -4.270 -4.098 -0.519 -2.854 -4.532 3.495 -3.647 -4.142 -0.253 -4.421 -2.216 0.676 -4.460 -0.557 -2.988 ML 112 110 6 115 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 44 C G - - MP 117 116 6 121 6 2 2 39 58 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.380 -4.270 -4.098 -0.519 -2.854 -4.532 3.495 -3.647 -4.142 -0.253 -4.421 -2.216 0.676 -4.460 -0.557 -2.988 ML 118 116 6 121 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 43 A U - - MP 123 122 6 127 6 2 2 37 56 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -3.654 -2.722 -3.682 3.235 -3.953 -5.004 0.338 -3.733 -3.580 1.227 -4.121 -0.221 -0.080 -4.214 -1.604 -2.525 ML 124 122 6 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 42 C G - - MP 129 128 6 133 6 2 2 35 54 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.380 -4.270 -4.098 -0.519 -2.854 -4.532 3.495 -3.647 -4.142 -0.253 -4.421 -2.216 0.676 -4.460 -0.557 -2.988 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 41 A U - - MP 135 134 6 139 6 2 2 33 52 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -3.654 -2.722 -3.682 3.235 -3.953 -5.004 0.338 -3.733 -3.580 1.227 -4.121 -0.221 -0.080 -4.214 -1.604 -2.525 ML 136 134 6 139 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 40 U A - - MP 141 140 6 145 6 2 2 31 50 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.016 -3.835 -3.873 -0.143 -2.853 -4.453 1.471 -3.536 -3.880 0.138 -4.261 -1.739 3.238 -4.173 -0.534 -2.721 ML 142 140 6 145 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 39 A U - - MP 147 146 6 151 6 2 2 29 48 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -3.654 -2.722 -3.682 3.235 -3.953 -5.004 0.338 -3.733 -3.580 1.227 -4.121 -0.221 -0.080 -4.214 -1.604 -2.525 ML 148 146 6 151 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 26 38 C G - - MP 153 152 6 157 6 2 2 27 46 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -4.380 -4.270 -4.098 -0.519 -2.854 -4.532 3.495 -3.647 -4.142 -0.253 -4.421 -2.216 0.676 -4.460 -0.557 -2.988 ML 154 152 6 157 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 27 37 A U - - MP 159 158 6 163 6 2 2 25 44 -9.073 -9.012 -0.022 -7.789 -8.069 -8.464 -3.654 -2.722 -3.682 3.235 -3.953 -5.004 0.338 -3.733 -3.580 1.227 -4.121 -0.221 -0.080 -4.214 -1.604 -2.525 ML 160 158 6 163 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 36 U A - - MP 165 164 6 169 4 2 2 23 42 -6.856 -7.063 -0.057 -5.477 -4.016 -3.835 -3.873 -0.143 -2.853 -4.453 1.471 -3.536 -3.880 0.138 -4.261 -1.739 3.238 -4.173 -0.534 -2.721 ML 166 164 6 169 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - U - - - ML 171 170 6 173 3 1 1 20 39 -7.879 -0.022 -6.533 -0.207 -0.860 -1.278 1.118 D 172 170 6 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - U - - - ML 174 173 3 176 3 1 1 19 38 -7.879 -0.022 -6.533 -0.699 -0.065 -1.445 1.043 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - U - - - ML 177 176 3 179 3 1 1 18 36 -7.879 -0.022 -6.533 -1.330 -1.354 -2.055 1.571 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - g - - - ML 180 179 3 182 3 1 1 16 35 -7.879 -0.022 -6.533 -0.389 -0.553 0.905 -0.551 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - A - - - ML 183 182 3 185 3 1 1 15 33 -7.879 -0.022 -6.533 1.429 -1.254 -1.363 -1.001 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - A - - - ML 186 185 3 188 3 1 1 13 32 -7.879 -0.022 -6.533 1.105 -1.366 -0.167 -0.809 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - U - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -0.207 -0.860 -1.278 1.118 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-299 ACC RF00756 DESC microRNA mir-299 LENG 63 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 00:05:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF00756/CM NSEQ 14 EFFN 2.778809 CKSUM 605754274 STATS LOCAL MSV -8.3041 0.71947 STATS LOCAL VITERBI -8.5303 0.71947 STATS LOCAL FORWARD -4.1042 0.71947 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34477 1.50489 1.43617 1.27468 1.38629 1.38629 1.38629 1.38629 0.15559 3.93753 2.08273 1.46634 0.26236 0.00000 * 1 0.16110 3.20340 2.93101 2.90357 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04455 3.82650 3.82650 1.46634 0.26236 2.12710 0.12691 2 0.35937 2.72054 1.79928 2.65029 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04455 3.82650 3.82650 1.46634 0.26236 0.72328 0.66390 3 2.25182 2.74906 0.27520 2.63963 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 4 0.50703 2.34285 1.65756 2.19766 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 5 0.50682 2.34331 1.65763 2.19831 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 6 0.33254 2.74537 2.04237 2.41962 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 7 2.53550 1.33315 2.37478 0.57253 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 0.47154 0.97828 8 2.71216 3.43769 0.14246 3.37409 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 9 2.71309 3.43887 0.14229 3.37572 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 10 3.20074 2.08000 2.97741 0.24409 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 11 3.20048 2.07998 2.97729 0.24412 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 12 3.20002 2.07995 2.97707 0.24416 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 13 0.26833 3.02099 2.01151 2.94112 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 14 3.39723 0.19565 3.19926 2.26872 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 15 3.39671 0.19570 3.19900 2.26862 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 16 2.35832 3.12165 0.20924 2.99305 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 17 3.19800 2.07979 2.97610 0.24436 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 18 3.39559 0.19580 3.19843 2.26842 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 19 3.39534 0.19582 3.19830 2.26837 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 20 3.39513 0.19584 3.19820 2.26833 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 21 0.26852 3.02002 2.01130 2.93978 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 22 3.39481 0.19587 3.19804 2.26828 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 23 0.26854 3.01993 2.01128 2.93966 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 24 3.19696 2.07971 2.97560 0.24446 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 25 0.26855 3.01987 2.01127 2.93958 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 26 3.39445 0.19590 3.19785 2.26821 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 27 0.26856 3.01983 2.01126 2.93952 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 28 3.19676 2.07970 2.97551 0.24447 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 29 1.63153 2.18206 2.50570 0.49439 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 30 2.11143 1.41783 2.64570 0.56962 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 31 2.79977 2.73184 3.32414 0.17665 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 32 1.88180 1.81200 0.59252 2.02932 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 33 0.28831 2.43082 2.62651 2.40598 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 34 0.52894 2.58730 1.48339 2.21936 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 35 1.63153 2.18206 2.50570 0.49439 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 36 0.27718 3.16246 1.91631 2.94482 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 37 3.15914 2.32830 2.82908 0.22188 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 38 2.54531 3.36391 0.16907 3.15819 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 39 3.15925 2.32831 2.82913 0.22187 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 40 0.27716 3.16258 1.91632 2.94496 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 41 3.15942 2.32834 2.82919 0.22186 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 42 2.54547 3.36414 0.16903 3.15845 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 43 3.15966 2.32837 2.82929 0.22183 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 44 2.54561 3.36434 0.16900 3.15868 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 45 2.54570 3.36447 0.16898 3.15884 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 46 2.54581 3.36464 0.16895 3.15903 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 47 0.27705 3.16323 1.91641 2.94571 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 48 3.20901 0.30078 2.94307 1.79180 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 49 2.54634 3.36540 0.16883 3.15992 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 50 2.54660 3.36579 0.16876 3.16037 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 51 3.16263 2.32881 2.83051 0.22153 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 52 0.27680 3.16483 1.91664 2.94756 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 53 0.27669 3.16546 1.91672 2.94829 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 54 0.27655 3.16631 1.91684 2.94927 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 55 3.57379 0.16886 3.28125 2.41078 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.03977 3.93753 3.93753 1.46634 0.26236 1.09861 0.40547 56 3.57887 0.16849 3.28359 2.41174 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.08798 3.93753 2.73764 1.46634 0.26236 1.09861 0.40547 57 1.42863 2.54136 0.53762 2.32826 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 58 2.43119 0.37835 3.01863 1.72481 58 C - - - 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 59 2.07748 1.87980 2.14359 0.50269 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 60 2.06930 1.87848 2.13908 0.50561 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 61 2.39080 0.37356 2.53413 1.96016 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 62 2.49608 2.08849 2.48767 0.34163 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.04170 3.89125 3.89125 1.46634 0.26236 1.67143 0.20823 63 2.01961 2.18367 2.13670 0.45158 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.02107 3.87062 * 1.46634 0.26236 0.00000 * //