INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-338 ACC RF00686 DESC microRNA mir-338 STATES 211 NODES 54 CLEN 69 W 85 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 14:55:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00686/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 36 EFFN 2.438965 CKSUM 3606654893 NULL 0.000 0.000 0.000 0.000 GA 57.00 TC 57.10 NC 55.80 EFP7GF -10.7607 0.71911 ECMLC 0.61417 -5.76803 3.49147 1600000 353975 0.003390 ECMGC 0.46203 -13.70623 -1.82338 1600000 96928 0.004127 ECMLI 0.60281 -3.76262 4.50895 1600000 175651 0.006832 ECMGI 0.48448 -9.22053 1.33843 1600000 66639 0.006002 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 105 -7.143 -7.350 -0.418 -2.070 IL 1 1 2 1 4 1 18 89 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 18 85 105 -7.814 -0.023 -6.468 -0.589 0.282 -1.346 0.787 D 4 2 3 5 3 0 12 83 102 -7.834 -2.667 -0.255 IL 5 5 3 5 3 1 17 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 17 84 104 -7.846 -0.022 -6.500 -0.887 1.130 -1.690 -0.058 D 7 5 3 8 3 0 11 82 102 -7.746 -2.226 -0.356 IL 8 8 3 8 3 1 16 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 16 83 102 -7.900 -0.022 -6.554 -0.054 -0.026 -0.513 0.437 D 10 8 3 11 3 0 11 81 100 -7.579 -3.092 -0.189 IL 11 11 3 11 3 1 16 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 1 15 82 101 -7.900 -0.022 -6.554 -0.135 0.100 0.076 -0.053 D 13 11 3 14 3 0 11 80 100 -7.579 -1.973 -0.434 IL 14 14 3 14 3 1 15 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - c - - - ML 15 14 3 17 3 1 15 81 100 -8.349 -0.123 -3.663 -0.180 0.755 -0.776 -0.243 D 16 14 3 17 3 0 10 79 99 -6.453 -1.567 -0.619 IL 17 17 3 17 3 1 15 82 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 71 - a - - MR 18 17 3 20 3 1 16 80 99 -8.245 -0.020 -6.563 0.749 -1.288 0.372 -0.700 D 19 17 3 20 3 0 10 78 97 -7.799 -2.135 -0.381 IR 20 20 3 20 3 1 14 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 70 - G - - MR 21 20 3 23 3 1 15 79 98 -8.294 -0.019 -6.612 -0.198 -1.750 1.252 -1.153 D 22 20 3 23 3 0 9 77 96 -7.646 -2.823 -0.228 IR 23 23 3 23 3 1 14 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 69 - a - - MR 24 23 3 26 3 1 14 78 97 -8.294 -0.019 -6.612 0.726 -0.507 -0.679 0.024 D 25 23 3 26 3 0 9 76 95 -7.646 -2.412 -0.309 IR 26 26 3 26 3 1 13 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - a - - MR 27 26 3 29 3 1 14 77 96 -8.314 -0.019 -6.632 0.647 0.016 -1.016 -0.107 D 28 26 3 29 3 0 9 75 95 -7.577 -0.496 -1.807 IR 29 29 3 29 3 1 12 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - G - - MR 30 29 3 32 5 1 13 76 95 -7.253 -0.035 -7.069 -7.281 -8.173 -1.965 -3.241 1.798 -2.628 D 31 29 3 32 5 0 7 74 94 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 10 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 66 A U - - MP 33 32 3 37 6 2 14 75 94 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.130 -3.079 -4.119 3.513 -4.632 -5.732 -0.309 -4.138 -4.002 0.713 -4.566 -0.504 -0.725 -4.860 -2.249 -2.936 ML 34 32 3 37 6 1 9 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 8 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 4 71 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 10 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 10 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 65 A U - - MP 39 38 6 43 6 2 13 73 92 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.130 -3.079 -4.119 3.513 -4.632 -5.732 -0.309 -4.138 -4.002 0.713 -4.566 -0.504 -0.725 -4.860 -2.249 -2.936 ML 40 38 6 43 6 1 8 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 8 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 4 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 9 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 9 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 64 C G - - MP 45 44 6 49 6 2 12 71 90 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.951 -4.891 -4.571 -1.091 -3.207 -4.930 3.658 -4.057 -4.637 -0.901 -4.852 -2.846 0.263 -4.993 -0.926 -3.464 ML 46 44 6 49 6 1 8 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 7 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 4 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 9 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 9 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 63 A U - - MP 51 50 6 55 6 2 11 69 88 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.130 -3.079 -4.119 3.513 -4.632 -5.732 -0.309 -4.138 -4.002 0.713 -4.566 -0.504 -0.725 -4.860 -2.249 -2.936 ML 52 50 6 55 6 1 7 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 6 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 3 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 8 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 8 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 62 A U - - MP 57 56 6 61 4 2 9 67 86 -7.143 -7.350 -0.046 -5.764 -4.072 -3.502 -3.975 3.543 -4.194 -5.203 -0.138 -2.080 -4.131 0.328 -4.662 -1.199 -0.510 -4.470 -2.001 -3.034 ML 58 56 6 61 4 1 6 67 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 4 67 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 3 66 85 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 8 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 7 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - U - - - ML 63 62 6 65 3 1 8 64 84 -8.525 -0.017 -6.843 -0.830 -0.435 -1.441 1.220 D 64 62 6 65 3 0 3 63 83 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 6 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 61 - U - - MR 66 65 3 68 5 1 7 63 83 -7.253 -0.035 -7.069 -7.281 -8.173 -1.829 -1.766 -2.578 1.704 D 67 65 3 68 5 0 1 62 81 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 5 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 60 A U - - MP 69 68 3 73 6 2 7 62 82 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.023 -3.483 -3.937 3.531 -4.140 -5.146 -0.107 -1.898 -4.091 0.331 -4.623 -1.200 -0.474 -4.416 -1.961 -3.003 ML 70 68 3 73 6 1 3 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 3 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 4 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 4 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 59 U A - - MP 75 74 6 79 6 2 6 60 80 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.634 -4.467 -4.421 -0.733 -3.273 -4.944 1.062 -3.998 -4.422 -0.537 -4.773 -2.352 3.504 -4.766 -0.939 -3.197 ML 76 74 6 79 6 1 2 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 3 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 4 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 58 C G - - MP 81 80 6 85 4 2 4 58 78 -7.044 -8.290 -0.071 -4.743 -4.951 -4.891 -4.571 -1.091 -3.207 -4.930 3.658 -4.057 -4.637 -0.901 -4.852 -2.846 0.263 -4.993 -0.926 -3.464 ML 82 80 6 85 4 1 1 58 77 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 2 57 77 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 55 75 -12.737 -14.007 -2.036 -0.404 IL 85 85 5 85 4 1 2 58 77 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 3 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - U - - MR 87 86 6 89 5 1 4 56 76 -7.253 -0.035 -7.069 -7.281 -8.173 -1.829 -1.766 -2.578 1.704 D 88 86 6 89 5 0 0 55 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 56 C G - - MP 90 89 3 94 6 2 5 55 75 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.951 -4.891 -4.571 -1.091 -3.207 -4.930 3.658 -4.057 -4.637 -0.901 -4.852 -2.846 0.263 -4.993 -0.926 -3.464 ML 91 89 3 94 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 2 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 2 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 55 U A - - MP 96 95 6 100 6 2 5 53 73 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.634 -4.467 -4.421 -0.733 -3.273 -4.944 1.062 -3.998 -4.422 -0.537 -4.773 -2.352 3.504 -4.766 -0.939 -3.197 ML 97 95 6 100 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 54 G C - - MP 102 101 6 106 6 2 5 51 71 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -5.101 -3.267 -5.242 -0.044 -5.736 -4.830 -1.011 -5.504 -4.554 3.713 -4.867 -0.982 -1.387 -4.701 -3.069 -4.113 ML 103 101 6 106 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 53 g u - - MP 108 107 6 112 6 2 4 49 69 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -3.592 -2.498 -3.727 2.430 -4.518 -5.165 -0.222 -3.878 -3.518 1.346 -4.067 2.433 -0.456 -4.250 -2.116 -2.509 ML 109 107 6 112 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 52 U A - - MP 114 113 6 118 6 2 4 47 67 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.634 -4.467 -4.421 -0.733 -3.273 -4.944 1.062 -3.998 -4.422 -0.537 -4.773 -2.352 3.504 -4.766 -0.939 -3.197 ML 115 113 6 118 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 51 G C - - MP 120 119 6 124 6 2 4 45 65 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -5.101 -3.267 -5.242 -0.044 -5.736 -4.830 -1.011 -5.504 -4.554 3.713 -4.867 -0.982 -1.387 -4.701 -3.069 -4.113 ML 121 119 6 124 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 50 C G - - MP 126 125 6 130 6 2 4 43 63 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.951 -4.891 -4.571 -1.091 -3.207 -4.930 3.658 -4.057 -4.637 -0.901 -4.852 -2.846 0.263 -4.993 -0.926 -3.464 ML 127 125 6 130 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 49 U A - - MP 132 131 6 136 6 2 3 41 61 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.242 -4.240 -4.151 -0.582 -1.857 -4.742 1.140 -3.855 -4.164 -0.405 -4.574 -2.309 3.433 -4.403 -0.850 -2.987 ML 133 131 6 136 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 48 G C - - MP 138 137 6 142 4 2 2 39 59 -7.143 -7.350 -0.046 -5.764 -5.101 -3.267 -5.242 -0.044 -5.736 -4.830 -1.011 -5.504 -4.554 3.713 -4.867 -0.982 -1.387 -4.701 -3.069 -4.113 ML 139 137 6 142 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - a - - - ML 144 143 6 146 3 1 1 37 56 -8.146 -0.018 -6.800 0.698 -0.072 -1.107 -0.056 D 145 143 6 146 3 0 0 36 55 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - g - - - ML 147 146 3 149 3 1 1 36 55 -8.146 -0.018 -6.800 0.081 -0.039 0.228 -0.325 D 148 146 3 149 3 0 0 35 54 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - U - - - ML 150 149 3 152 3 1 1 35 54 -8.146 -0.018 -6.800 -0.843 -1.024 -1.755 1.408 D 151 149 3 152 3 0 0 33 53 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - G - - - ML 153 152 3 155 3 1 1 34 53 -8.146 -0.018 -6.800 -1.965 -3.241 1.798 -2.628 D 154 152 3 155 3 0 0 32 52 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - A - - - ML 156 155 3 158 3 1 1 33 52 -8.146 -0.263 -2.617 1.554 -1.995 -1.097 -1.531 D 157 155 3 158 3 0 0 31 51 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - G - - - ML 159 158 3 161 3 1 1 32 51 -7.905 -0.021 -6.559 -1.453 -2.653 1.693 -2.039 D 160 158 3 161 3 0 0 30 50 -7.561 -0.441 -1.953 IL 161 161 3 161 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - U - - - ML 162 161 3 164 3 1 1 30 49 -8.146 -0.018 -6.800 -1.377 -1.080 -2.117 1.542 D 163 161 3 164 3 0 0 29 48 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - G - - - ML 165 164 3 167 3 1 1 29 48 -8.146 -0.108 -3.864 -0.453 -1.455 1.292 -1.132 D 166 164 3 167 3 0 0 28 47 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - u - - - ML 168 167 3 170 3 1 1 28 47 -8.057 -0.054 -4.917 0.360 -0.543 -0.426 0.362 D 169 167 3 170 3 0 0 27 46 -6.876 -2.389 -0.321 IL 170 170 3 170 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - c - - - ML 171 170 3 173 3 1 1 27 46 -2.393 -0.322 -6.677 -0.249 0.377 -0.155 -0.056 D 172 170 3 173 3 0 0 26 45 -2.456 -1.776 -0.928 IL 173 173 3 173 3 1 1 27 46 -1.915 -0.516 -4.806 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - u - - - ML 174 173 3 176 3 1 1 25 44 -8.104 -0.042 -5.320 0.319 -0.405 -0.670 0.452 D 175 173 3 176 3 0 0 24 43 -6.554 -1.089 -0.946 IL 176 176 3 176 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - c - - - ML 177 176 3 179 3 1 1 24 43 -8.124 -0.073 -4.460 -0.171 0.382 -0.944 0.366 D 178 176 3 179 3 0 0 23 42 -6.389 -1.902 -0.473 IL 179 179 3 179 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - a - - - ML 180 179 3 182 3 1 1 23 42 -8.071 -0.250 -2.684 0.735 -0.905 -0.629 0.209 D 181 179 3 182 3 0 0 22 41 -6.794 -1.164 -0.877 IL 182 182 3 182 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - c - - - ML 183 182 3 185 3 1 1 22 41 -7.905 -0.021 -6.559 -0.069 0.121 -0.126 0.060 D 184 182 3 185 3 0 0 21 40 -7.561 -0.441 -1.953 IL 185 185 3 185 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - a - - - ML 186 185 3 188 3 1 1 21 40 -8.146 -0.018 -6.800 0.281 -0.400 -0.145 0.167 D 187 185 3 188 3 0 0 20 39 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 41 - g - - - ML 189 188 3 191 3 1 1 20 39 -8.146 -0.043 -5.271 0.170 -0.514 0.354 -0.159 D 190 188 3 191 3 0 0 19 38 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 42 - a - - - ML 192 191 3 194 3 1 1 19 37 -8.122 -0.018 -6.776 0.578 -0.100 -0.700 -0.061 D 193 191 3 194 3 0 0 18 37 -6.410 -1.271 -0.801 IL 194 194 3 194 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 43 - a - - - ML 195 194 3 197 3 1 1 17 36 -8.146 -0.018 -6.800 0.736 -0.917 0.093 -0.439 D 196 194 3 197 3 0 0 17 36 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 44 - A - - - ML 198 197 3 200 3 1 1 16 35 -8.146 -0.018 -6.800 1.465 -1.851 -0.799 -1.365 D 199 197 3 200 3 0 0 16 34 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 45 - C - - - ML 201 200 3 203 3 1 1 15 33 -8.146 -0.018 -6.800 -2.188 1.725 -3.020 -1.513 D 202 200 3 203 3 0 0 15 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 46 - U - - - ML 204 203 3 206 3 1 1 13 31 -8.146 -0.018 -6.800 -1.829 -1.766 -2.578 1.704 D 205 203 3 206 3 0 0 13 32 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 47 - C - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -2.188 1.725 -3.020 -1.513 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-338 ACC RF00686 DESC microRNA mir-338 LENG 69 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 14:55:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00686/CM NSEQ 36 EFFN 3.203613 CKSUM 3606654893 STATS LOCAL MSV -8.6554 0.71911 STATS LOCAL VITERBI -8.9673 0.71911 STATS LOCAL FORWARD -3.6498 0.71911 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39070 1.50462 1.42011 1.24720 1.38629 1.38629 1.38629 1.38629 0.30721 4.10620 1.39418 1.46634 0.26236 0.00000 * 1 1.89960 1.14810 2.43651 0.80818 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84280 3.84280 1.46634 0.26236 2.04043 0.13923 2 2.17557 0.51403 2.75001 1.49411 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04267 3.86856 3.86856 1.46634 0.26236 1.62629 0.21897 3 1.44773 1.38108 1.74508 1.08187 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.04083 3.91180 3.91180 1.46634 0.26236 2.61936 0.07564 4 1.52962 1.28166 1.29006 1.46727 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.04083 3.91180 3.91180 1.46634 0.26236 1.40486 0.28157 5 1.56932 0.78439 1.96714 1.63189 5 c - - : 1.38629 1.38629 1.38629 1.38629 0.03895 3.95810 3.95810 1.46634 0.26236 0.19368 1.73680 6 0.21760 3.24250 2.17482 3.14981 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 7 0.21705 3.24608 2.17567 3.15461 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 8 3.58356 0.16256 3.40569 2.41827 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 9 0.21679 3.24780 2.17608 3.15692 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 10 0.17229 3.03347 2.66756 3.20160 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 11 2.11065 1.72336 2.51191 0.47923 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 12 0.17941 2.96643 2.65000 3.16779 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 13 3.42625 2.25239 3.22168 0.19546 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 14 3.59160 0.16198 3.40992 2.41978 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 15 3.55830 0.16443 3.39228 2.41347 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 16 3.40963 2.25085 3.21328 0.19673 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 17 2.82609 3.60665 0.12253 3.54261 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 18 0.96340 3.12487 0.65457 2.90414 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 19 3.41747 2.25158 3.21724 0.19613 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 20 2.82732 3.60832 0.12233 3.54488 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 21 3.58162 0.16270 3.40466 2.41791 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 22 3.29056 2.08966 3.10361 0.23048 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 23 2.82670 3.60749 0.12243 3.54375 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 24 0.86854 1.41322 2.24217 1.46598 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 25 1.35818 1.38343 1.17861 1.69038 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 26 2.10949 2.22326 2.78892 0.34396 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 27 3.07555 3.99935 0.09723 3.56977 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 28 0.25768 2.97869 2.22373 2.68684 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.23095 4.10620 1.66202 1.46634 0.26236 1.09861 0.40547 29 2.69634 3.57367 0.14896 3.14918 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04066 3.91591 3.91591 1.46634 0.26236 0.16007 1.91110 30 2.56768 2.25839 3.08479 0.25744 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 31 1.80003 2.49182 0.42140 2.34530 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.10546 4.10620 2.48148 1.46634 0.26236 1.09861 0.40547 32 1.12639 1.78729 1.68434 1.13067 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.06402 4.03669 3.11554 1.46634 0.26236 0.82045 0.58024 33 1.62233 1.07131 1.46844 1.47090 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.27358 1.50563 4.04729 0.24084 1.54163 0.94659 0.49112 34 1.15461 1.67985 1.87069 1.06595 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05327 4.07337 3.35642 1.46634 0.26236 0.51601 0.90856 35 1.54448 1.06985 2.08989 1.14001 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.07738 4.08879 2.85246 1.46634 0.26236 1.39826 0.28372 36 0.84563 2.08200 1.85109 1.24145 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.22376 4.04699 1.69819 1.46634 0.26236 0.63410 0.75590 37 1.47087 1.26612 1.44635 1.37467 39 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04066 3.91591 3.91591 1.46634 0.26236 0.16007 1.91110 38 1.19119 1.66788 1.47171 1.28027 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 39 1.28663 1.75150 1.09032 1.54095 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.05337 4.10620 3.33812 1.46634 0.26236 1.09861 0.40547 40 0.96368 1.43363 1.90469 1.46446 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03416 4.08699 4.08699 1.46634 0.26236 0.65638 0.73132 41 0.85037 2.06977 1.29333 1.75926 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 42 0.31822 2.86494 1.98243 2.55317 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 43 3.29833 0.12934 3.86633 2.75762 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 44 2.96776 2.87233 3.49717 0.14881 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 45 3.29833 0.12934 3.86633 2.75762 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 46 3.72058 0.14663 3.45019 2.52043 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 47 0.24601 3.26890 2.01582 3.06125 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 48 2.69689 3.57035 0.14006 3.34872 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 49 3.72415 0.14640 3.45190 2.52110 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 50 0.22227 3.40870 2.08786 3.16374 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 51 3.10924 1.99244 2.91560 0.26810 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 52 3.73235 0.14589 3.45581 2.52263 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 53 0.22172 3.41313 2.08857 3.16866 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 54 2.70384 3.58103 0.13869 3.36086 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 55 2.96776 2.87233 3.49717 0.14881 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 56 2.70280 3.57943 0.13889 3.35903 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 57 0.22115 3.41774 2.08930 3.17377 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 58 3.41211 2.91864 3.07263 0.14304 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 59 2.96776 2.87233 3.49717 0.14881 61 U - - - 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 60 3.42776 2.93328 3.09977 0.14011 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 61 3.37881 2.51423 3.05695 0.17679 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 62 2.70090 3.57650 0.13927 3.35571 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 63 3.38583 2.51536 3.05998 0.17623 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 64 3.39191 2.51633 3.06259 0.17574 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.03350 4.10620 4.10620 1.46634 0.26236 1.09861 0.40547 65 3.07555 3.99935 0.09723 3.56977 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.21749 4.10620 1.72041 1.46634 0.26236 1.09861 0.40547 66 0.90517 1.34515 2.17119 1.50966 68 a - - : 1.38629 1.38629 1.38629 1.38629 0.05787 3.92884 3.30869 1.46634 0.26236 2.55472 0.08090 67 0.84977 1.75253 1.89257 1.39244 69 a - - : 1.38629 1.38629 1.38629 1.38629 0.04083 3.91180 3.91180 1.46634 0.26236 2.61936 0.07564 68 1.59222 2.77938 0.44389 2.37609 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.08478 3.91180 2.79232 1.46634 0.26236 2.61936 0.07564 69 0.83368 2.39664 1.08396 1.99306 71 a - - : 1.38629 1.38629 1.38629 1.38629 0.02154 3.84856 * 1.46634 0.26236 0.00000 * //