INFERNAL1/a [1.1.5 | Sep 2023] NAME P26 ACC RF00630 DESC Pseudomonas sRNA P26 STATES 207 NODES 55 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 04:26:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00630/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 27 EFFN 4.637329 CKSUM 1017303158 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.00 NC 35.90 EFP7GF -11.7245 0.71919 ECMLC 0.65518 -8.22485 0.85501 1600000 460032 0.002609 ECMGC 0.48133 -13.16704 -1.88113 1600000 91461 0.004373 ECMLI 0.58321 -6.83392 2.00596 1600000 208054 0.005768 ECMGI 0.54464 -8.56991 0.98095 1600000 72639 0.005507 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 101 -7.771 -7.978 -0.030 -6.392 IL 1 1 2 1 4 1 20 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 20 82 101 -8.742 -0.012 -7.396 0.426 -0.977 0.102 0.105 D 4 2 3 5 3 0 15 81 100 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 19 81 100 -8.742 -0.012 -7.396 0.529 -0.338 -0.395 0.008 D 7 5 3 8 3 0 14 80 99 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 18 80 99 -8.742 -0.012 -7.396 -0.324 0.824 -0.839 -0.198 D 10 8 3 11 3 0 13 79 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 17 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 17 79 98 -8.742 -0.012 -7.396 -0.642 0.339 -1.325 0.762 D 13 11 3 14 3 0 12 78 97 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 16 78 97 -8.742 -0.012 -7.396 -1.078 -0.867 -1.782 1.426 D 16 14 3 17 3 0 12 77 96 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 16 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 15 77 96 -8.742 -0.012 -7.396 -0.800 -1.229 -1.508 1.405 D 19 17 3 20 3 0 11 76 95 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 15 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - g - - - ML 21 20 3 23 3 1 14 76 95 -8.742 -0.012 -7.396 0.033 -0.392 0.718 -0.809 D 22 20 3 23 3 0 10 74 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 14 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 24 23 3 26 3 1 14 75 94 -8.742 -0.012 -7.396 0.271 0.154 -0.374 -0.138 D 25 23 3 26 3 0 10 73 93 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 13 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 13 74 93 -8.742 -0.012 -7.396 -1.332 -2.167 1.411 -0.471 D 28 26 3 29 3 0 9 72 92 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 12 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 12 73 92 -8.742 -0.012 -7.396 -0.103 -0.802 -0.530 0.850 D 31 29 3 32 3 0 9 71 91 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 12 75 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 11 72 91 -8.742 -0.012 -7.396 -0.771 0.137 -0.760 0.786 D 34 32 3 35 3 0 8 70 90 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 11 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - u - - - ML 36 35 3 38 3 1 10 71 90 -8.742 -0.012 -7.396 -0.571 -0.191 -0.890 0.934 D 37 35 3 38 3 0 8 69 89 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 10 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - g - - - ML 39 38 3 41 3 1 9 70 89 -9.092 -0.011 -7.410 -0.057 0.045 0.324 -0.406 D 40 38 3 41 3 0 7 68 88 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 9 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 70 - U - - MR 42 41 3 44 2 1 8 69 88 -9.250 -0.002 -2.946 -2.708 -3.725 1.865 D 43 41 3 44 2 0 7 68 87 -4.432 -0.068 IR 44 44 3 44 2 1 8 70 89 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 120 0 7 68 87 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 39 58 -0.106 -4.177 -6.714 -7.354 [ MATP 17 ] 14 40 C G - - MP 47 46 1 51 6 2 2 39 58 -9.420 -9.359 -0.017 -8.136 -8.416 -8.811 -4.705 -4.677 -4.413 -0.780 -3.070 -4.846 3.294 -3.868 -4.424 -0.608 -4.733 -2.600 1.852 -4.759 -0.717 -3.234 ML 48 46 1 51 6 1 1 38 56 -7.001 -7.347 -1.214 -0.970 -7.197 -4.726 -0.299 0.786 -1.023 -0.043 MR 49 46 1 51 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 39 A U - - MP 53 52 6 57 6 2 2 37 56 -9.448 -9.387 -0.017 -8.164 -8.444 -8.839 -3.879 -2.917 -3.938 3.116 -4.465 -5.103 -0.128 -4.171 -3.903 1.676 -4.423 0.128 0.246 -4.250 -2.056 -2.807 ML 54 52 6 57 6 1 1 36 54 -6.694 -7.040 -0.833 -1.449 -6.890 -4.420 0.949 -0.817 -0.556 -0.284 MR 55 52 6 57 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 38 G C - - MP 59 58 6 63 6 2 2 35 54 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -5.004 -3.377 -4.969 -0.010 -5.383 -4.913 0.240 -5.327 -4.725 3.622 -5.001 -1.085 -1.086 -4.601 -2.704 -3.888 ML 60 58 6 63 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 37 C G - - MP 65 64 6 69 6 2 2 33 52 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -5.041 -5.060 -4.663 -1.158 -3.234 -5.023 3.532 -4.067 -4.695 -1.002 -4.956 -3.029 1.012 -5.048 -0.222 -3.496 ML 66 64 6 69 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 36 C G - - MP 71 70 6 75 4 2 2 31 50 -7.771 -7.978 -0.030 -6.392 -5.206 -5.240 -4.771 -1.353 -3.298 -5.088 3.596 -4.150 -4.816 -1.212 -5.045 -3.235 1.014 -5.188 -0.970 -3.616 ML 72 70 6 75 4 1 1 32 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 32 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - - - ML 77 76 6 79 3 1 1 28 47 -8.742 -0.012 -7.396 -0.853 0.154 -0.983 0.870 D 78 76 6 79 3 0 0 28 46 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - - - ML 80 79 3 82 3 1 1 27 45 -8.742 -0.012 -7.396 0.572 -2.302 1.012 -1.766 D 81 79 3 82 3 0 0 26 45 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - A - - - ML 83 82 3 85 3 1 1 26 44 -9.092 -0.011 -7.410 1.142 -0.793 -0.943 -0.525 D 84 82 3 85 3 0 0 25 43 -5.620 -0.734 -1.403 IL 85 85 3 85 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 35 - A - - MR 86 85 3 88 3 1 1 25 43 -9.092 -0.462 -1.877 1.292 -0.483 -1.418 -1.115 D 87 85 3 88 3 0 0 24 42 -6.390 -1.568 -0.620 IR 88 88 3 88 3 1 1 27 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 34 - a - - MR 89 88 3 91 3 1 1 25 42 -8.646 -0.015 -6.963 0.704 -0.611 -1.127 0.332 D 90 88 3 91 3 0 0 23 40 -8.623 -2.909 -0.210 IR 91 91 3 91 3 1 1 26 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 33 - a - - MR 92 91 3 94 5 1 1 24 41 -1.686 -1.151 -7.220 -7.432 -2.142 0.959 -0.838 -0.969 -0.021 D 93 91 3 94 5 0 0 22 40 -2.752 -1.153 -4.520 -5.951 -1.548 IR 94 94 3 94 5 1 1 23 41 -3.604 -0.196 -7.115 -5.283 -6.388 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 31 G C - - MP 95 94 3 99 6 2 2 22 40 -9.228 -9.167 -0.019 -7.943 -8.223 -8.618 -4.097 -2.868 -4.046 0.643 -4.303 -4.461 0.276 -4.354 -4.064 3.330 -4.406 -0.556 0.578 -3.932 -1.742 -2.969 ML 96 94 3 99 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 3 99 6 1 1 21 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 3 99 6 0 0 17 35 -11.218 -9.916 -5.713 -6.395 -6.413 -0.065 IL 99 99 5 99 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 22 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 30 c g - - MP 101 100 6 105 4 2 2 20 38 -1.005 -7.451 -1.562 -2.669 -3.425 -3.283 -3.436 1.300 -2.639 -4.168 2.719 -3.241 -3.425 0.742 -3.898 -1.208 1.577 -3.628 -0.301 -2.316 ML 102 100 6 105 4 1 1 18 36 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 4 1 1 18 36 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 104 100 6 105 4 0 0 17 35 -3.758 -6.343 -1.695 -0.725 IL 105 105 5 105 4 1 1 19 37 -3.627 -3.149 -0.327 -6.796 0.000 0.000 0.000 0.000 IR 106 106 6 106 3 1 1 19 37 -1.603 -0.690 -4.303 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - u - - - ML 107 106 6 109 3 1 1 16 34 -8.303 -0.016 -6.957 0.139 -0.283 -0.926 0.633 D 108 106 6 109 3 0 0 14 33 -8.541 -4.054 -0.094 IL 109 109 3 109 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - u - - - ML 110 109 3 112 3 1 1 14 33 -8.303 -0.016 -6.957 -0.171 -0.091 -1.325 0.827 D 111 109 3 112 3 0 0 13 32 -8.541 -0.899 -1.116 IL 112 112 3 112 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - u - - - ML 113 112 3 115 3 1 1 13 31 -8.578 -0.013 -7.232 0.426 -0.479 -0.854 0.471 D 114 112 3 115 3 0 0 12 31 -7.609 -1.966 -0.437 IL 115 115 3 115 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - a - - - ML 116 115 3 118 2 1 1 1 1 * 0.000 0.967 -0.832 -0.989 -0.029 D 117 115 3 118 2 0 0 0 0 * 0.000 IL 118 118 3 118 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 119 118 3 -1 0 0 0 0 0 [ BEGR 35 ] - - - - - - S 120 45 1 121 3 0 0 41 60 -8.742 -0.012 -7.396 IL 121 121 2 121 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - A - - - ML 122 121 2 124 3 1 1 41 60 -8.742 -0.012 -7.396 1.777 -2.984 -1.791 -2.667 D 123 121 2 124 3 0 0 40 59 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - U - - - ML 125 124 3 127 5 1 1 40 59 -4.912 -0.067 -7.608 -7.820 -8.711 -1.135 -0.909 -1.025 1.334 D 126 124 3 127 5 0 0 39 57 -4.959 -0.803 -4.221 -2.596 -2.508 IL 127 127 3 127 5 1 1 40 59 -2.586 -0.429 -4.265 -6.097 -5.370 0.000 0.000 0.000 0.000 [ MATP 38 ] 44 69 G C - - MP 128 127 3 132 6 2 2 39 58 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -5.715 -3.631 -5.933 -0.489 -6.900 -5.180 -1.903 -6.313 -5.009 3.778 -5.294 -0.437 -2.184 -5.138 -4.003 -4.804 ML 129 127 3 132 6 1 1 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 3 132 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 3 132 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 45 68 G C - - MP 134 133 6 138 6 2 2 37 56 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -6.206 -3.821 -6.623 -0.854 -7.234 -5.233 -2.240 -6.846 -5.169 3.854 -5.429 -1.609 -2.601 -5.389 -4.387 -5.481 ML 135 133 6 138 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 46 67 C G - - MP 140 139 6 144 6 2 2 35 54 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -6.271 -6.323 -5.641 -2.495 -4.089 -5.825 3.859 -5.085 -5.810 -2.411 -5.820 -4.366 -0.822 -6.222 -1.902 -4.615 ML 141 139 6 144 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 47 66 u g - - MP 146 145 6 150 6 2 2 33 52 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -4.952 -5.019 -4.587 -1.259 -3.207 -4.943 1.112 -4.033 -4.635 -1.144 -4.897 -3.112 2.346 -4.977 2.861 -3.475 ML 147 145 6 150 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 48 65 G C - - MP 152 151 6 156 6 2 2 31 50 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -6.206 -3.821 -6.623 -0.854 -7.234 -5.233 -2.240 -6.846 -5.169 3.854 -5.429 -1.609 -2.601 -5.389 -4.387 -5.481 ML 153 151 6 156 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 49 64 G C - - MP 158 157 6 162 6 2 2 29 48 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -5.642 -3.602 -5.837 -0.435 -6.819 -5.171 -1.835 -6.227 -4.982 3.762 -5.271 -0.280 -2.113 -5.099 -3.927 -4.709 ML 159 157 6 162 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 50 63 U A - - MP 164 163 6 168 6 2 2 27 46 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -6.311 -6.161 -5.899 -2.381 -4.497 -6.267 -0.177 -5.304 -5.891 -2.335 -6.169 -4.026 3.829 -6.336 -2.120 -4.337 ML 165 163 6 168 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 51 62 G C - - MP 170 169 6 174 6 2 2 25 44 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -6.206 -3.821 -6.623 -0.854 -7.234 -5.233 -2.240 -6.846 -5.169 3.854 -5.429 -1.609 -2.601 -5.389 -4.387 -5.481 ML 171 169 6 174 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 52 61 g c - - MP 176 175 6 180 6 2 2 23 42 -9.479 -9.418 -0.016 -8.194 -8.474 -8.869 -4.165 -2.879 -4.128 2.350 -5.130 -4.955 -0.434 -4.566 -4.208 2.952 -4.613 -0.021 -0.682 -4.200 -2.410 -3.009 ML 177 175 6 180 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 53 60 C G - - MP 182 181 6 186 4 2 2 21 40 -7.771 -7.978 -0.030 -6.392 -4.778 -4.743 -4.495 -0.830 -3.155 -4.938 3.200 -3.950 -4.501 -0.661 -4.816 -2.650 2.118 -4.836 -0.797 -3.307 ML 183 181 6 186 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 186 186 5 186 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 54 - U - - - ML 188 187 6 190 3 1 1 18 37 -8.742 -0.012 -7.396 -2.946 -2.708 -3.725 1.865 D 189 187 6 190 3 0 0 18 36 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 55 - U - - - ML 191 190 3 193 3 1 1 17 35 -8.742 -0.012 -7.396 -0.208 -0.765 -1.271 1.092 D 192 190 3 193 3 0 0 17 35 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 56 - U - - - ML 194 193 3 196 3 1 1 16 34 -8.742 -0.012 -7.396 -0.181 -1.033 -1.308 1.154 D 195 193 3 196 3 0 0 16 34 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 57 - U - - - ML 197 196 3 199 3 1 1 14 33 -8.742 -0.475 -1.845 -1.112 -1.808 -2.473 1.619 D 198 196 3 199 3 0 0 14 33 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 58 - U - - - ML 200 199 3 202 3 1 1 13 31 -8.283 -0.017 -6.937 -0.880 -1.348 -1.948 1.488 D 201 199 3 202 3 0 0 12 30 -8.585 -4.098 -0.091 IL 202 202 3 202 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 59 - A - - - ML 203 202 3 205 2 1 1 1 1 * 0.000 1.405 -1.882 -0.517 -1.387 D 204 202 3 205 2 0 0 0 0 * 0.000 IL 205 205 3 205 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 206 205 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME P26 ACC RF00630 DESC Pseudomonas sRNA P26 LENG 66 MAXL 136 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 04:26:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00630/CM NSEQ 27 EFFN 7.788208 CKSUM 1017303158 STATS LOCAL MSV -7.7268 0.71919 STATS LOCAL VITERBI -8.8834 0.71919 STATS LOCAL FORWARD -3.7287 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62074 1.35984 1.29861 1.29962 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 0.00000 * 1 1.07227 2.19555 1.26907 1.32659 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 2 0.98876 1.61384 1.66430 1.42914 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 3 1.71690 0.70479 2.01697 1.64452 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 4 2.01269 1.07460 2.46193 0.82174 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 5 2.40420 2.11383 2.87753 0.31114 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 6 2.12203 2.48812 2.61085 0.32341 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 7 1.42622 1.63121 0.77318 2.27740 7 g - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 8 1.20104 1.20744 1.64163 1.57749 8 a - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 9 2.77012 3.39026 0.31490 1.74996 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 10 1.50193 2.05540 1.75157 0.74284 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 11 2.19593 1.23034 1.94144 0.79174 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 12 1.94213 1.50859 2.04699 0.68071 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 13 1.49884 1.28261 1.07662 1.84168 13 g - - : 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 14 3.38271 0.39040 3.34170 1.37090 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 15 0.40993 3.36319 1.49772 2.55053 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 16 3.03639 2.62463 0.16154 3.55096 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 17 3.80082 0.23531 3.66469 1.82194 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 18 3.94170 0.20040 3.81662 1.96484 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 19 2.27478 1.22023 2.13704 0.72564 19 u - - - 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 20 0.94975 3.51445 0.61177 3.19402 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 21 0.51395 1.99489 2.14965 1.90169 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.42960 4.75840 1.07689 1.46634 0.26236 1.09861 0.40547 22 2.39679 2.85558 0.30067 2.19691 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.02603 4.35482 4.35482 1.46634 0.26236 2.38584 0.09652 23 1.71646 0.74484 2.21979 1.44031 23 c - - < 1.38629 1.38629 1.38629 1.38629 1.26222 0.59707 1.79244 0.04444 3.13579 1.00001 0.45867 24 1.28839 1.59217 2.10639 0.91848 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02483 4.40122 4.40122 1.46634 0.26236 3.63783 0.02666 25 1.56508 1.42194 2.50633 0.75904 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02483 4.40122 4.40122 1.46634 0.26236 0.56202 0.84411 26 1.06045 1.76174 2.05167 1.04006 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01976 4.62710 4.62710 1.46634 0.26236 1.41522 0.27822 27 0.64363 2.06173 2.19414 1.44423 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.38317 3.05218 1.30546 0.36219 1.19121 2.64829 0.07340 28 1.61241 2.39469 0.67589 1.60598 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.02603 4.35482 4.35482 1.46634 0.26236 3.73065 0.02427 29 2.31486 0.33603 2.68585 2.13323 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.96875 0.80336 1.75664 0.05641 2.90318 0.48265 0.96011 30 0.63910 2.07913 2.19592 1.44419 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.14055 4.50150 2.12001 1.46634 0.26236 3.38122 0.03460 31 0.83120 1.88228 2.33534 1.15374 34 a - - - 1.38629 1.38629 1.38629 1.38629 0.02521 4.38616 4.38616 1.46634 0.26236 0.05233 2.97624 32 0.40038 1.70128 2.63000 2.58486 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 33 2.10954 3.98183 0.17901 3.73137 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 34 2.14386 3.84598 0.18091 3.61469 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 35 3.83558 0.17337 2.57519 2.78967 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.06323 4.75840 2.94333 1.46634 0.26236 1.09861 0.40547 36 2.68937 1.79435 3.23265 0.31967 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.06098 4.71329 2.99211 1.46634 0.26236 2.09697 0.13105 37 1.44767 3.58763 0.35255 3.37180 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.01890 4.67121 4.67121 1.46634 0.26236 0.17088 1.85102 38 0.10836 3.95945 2.78840 3.81211 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 39 2.57334 2.16879 2.15717 0.36564 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.05428 3.11792 4.75840 0.35092 1.21753 1.09861 0.40547 40 3.40977 4.45509 0.05903 4.36976 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 41 3.60952 4.63505 0.04783 4.61171 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 42 4.83348 0.04588 4.78092 3.55793 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 43 4.04507 2.35974 3.92492 0.14121 47 U - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 44 3.60479 4.62695 0.04817 4.60054 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 45 3.37282 4.40841 0.06171 4.31453 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 46 4.93419 3.66428 4.90136 0.04109 50 U - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 47 3.60122 4.62086 0.04842 4.59216 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 48 0.98700 3.33768 0.59977 3.14997 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 49 3.67811 0.45739 3.48961 1.16706 53 C - - < 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 50 4.07476 3.83482 4.62543 0.04961 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 51 1.57549 2.02811 2.40710 0.55961 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 52 1.55382 2.29613 2.45206 0.50783 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 53 2.32752 3.06668 3.59043 0.18838 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.40074 4.75840 1.13446 1.46634 0.26236 1.09861 0.40547 54 2.23935 2.69116 3.17126 0.24370 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02529 4.38296 4.38296 1.46634 0.26236 3.67592 0.02565 55 0.32252 3.12013 1.75602 2.83374 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02529 4.38296 4.38296 1.46634 0.26236 0.05198 2.98277 56 1.23598 3.64963 0.42885 3.43599 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 57 3.39169 0.69425 3.13946 0.85898 61 c - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 58 4.67231 0.05990 4.50653 3.27669 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 59 0.04766 5.09594 3.47935 4.64708 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 60 4.44664 0.11333 4.26930 2.50800 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 61 4.68756 0.05954 4.51508 3.27943 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 62 1.06493 4.07426 0.48462 3.80258 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 63 3.82960 4.93833 0.03905 4.66616 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 64 4.71992 0.05879 4.53303 3.28514 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 65 4.52938 0.10259 4.33547 2.60886 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.01731 4.75840 4.75840 1.46634 0.26236 1.09861 0.40547 66 4.07476 3.83482 4.62543 0.04961 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.00869 4.74978 * 1.46634 0.26236 0.00000 * //