INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD99 ACC RF00608 DESC Small nucleolar RNA SNORD99 STATES 226 NODES 71 CLEN 74 W 91 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 14:22:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00608/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 23 EFFN 2.664429 CKSUM 3103451324 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.00 NC 59.80 EFP7GF -9.7073 0.71876 ECMLC 0.68281 -5.46461 2.84202 1600000 348680 0.003442 ECMGC 0.40578 -19.31319 -5.79225 1600000 96567 0.004142 ECMLI 0.63641 -3.40838 4.91092 1600000 239077 0.005019 ECMGI 0.44515 -13.20022 -1.87677 1600000 61824 0.006470 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 91 111 -7.117 -8.363 -0.068 -4.816 IL 1 1 2 1 4 1 27 92 113 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 29 93 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 77 - u - - MR 3 2 3 5 5 1 30 91 111 -7.319 -0.033 -7.134 -7.346 -8.238 -0.182 0.013 -0.879 0.647 D 4 2 3 5 5 0 23 90 110 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 27 91 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 76 g c - - MP 6 5 3 10 6 2 30 90 110 -9.218 -9.157 -0.042 -7.934 -5.736 -8.609 -2.001 -0.602 -2.168 1.528 -2.248 -2.168 1.236 -2.535 -2.250 2.048 -2.763 -0.209 1.057 -1.222 -0.378 -1.377 ML 7 5 3 10 6 1 25 89 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 24 88 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 19 86 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 26 90 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 27 89 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 75 C G - - MP 12 11 6 16 6 2 29 88 108 -9.196 -9.135 -0.020 -7.911 -8.191 -8.586 -5.004 -4.949 -4.615 -1.145 -3.241 -4.967 3.670 -4.096 -4.683 -0.961 -4.891 -2.905 0.223 -5.042 -0.962 -3.509 ML 13 11 6 16 6 1 24 87 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 24 87 107 -7.241 -5.970 -1.208 -5.948 -1.082 -4.162 0.172 -0.702 0.464 -0.186 D 15 11 6 16 6 0 19 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 26 88 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 26 87 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 74 U A - - MP 18 17 6 22 6 2 28 86 106 -9.218 -9.157 -0.020 -7.934 -8.214 -8.609 -4.544 -4.419 -4.504 -0.763 -3.644 -5.180 0.659 -4.274 -4.495 -0.553 -4.943 -2.375 3.574 -4.744 -1.318 -2.070 ML 19 17 6 22 6 1 23 85 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 22 85 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 18 82 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 25 86 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 25 85 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 73 G C - - MP 24 23 6 28 6 2 26 84 104 -9.218 -9.157 -0.020 -7.934 -8.214 -8.609 -5.243 -3.337 -5.406 -0.145 -5.934 -4.883 -1.174 -5.672 -4.639 3.738 -4.943 -1.060 -1.547 -4.792 -3.241 -4.276 ML 25 23 6 28 6 1 22 83 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 21 83 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 18 81 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 24 84 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 23 83 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 72 g c - - MP 30 29 6 34 4 2 24 82 102 -7.221 -7.428 -0.044 -5.843 -3.389 -2.442 -3.351 1.596 -3.754 -4.051 0.686 -3.770 -3.570 2.863 -3.956 0.133 0.383 -3.329 -0.602 -2.334 ML 31 29 6 34 4 1 21 82 103 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 4 1 19 82 102 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 33 29 6 34 4 0 18 81 101 -4.568 -4.250 -2.265 -0.520 IL 34 34 5 34 4 1 23 83 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 35 35 6 35 3 1 22 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - U - - - ML 36 35 6 38 3 1 23 80 100 -8.220 -0.017 -6.874 -1.081 -1.248 -1.389 1.446 D 37 35 6 38 3 0 17 78 99 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 22 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - C - - - ML 39 38 3 41 3 1 22 79 99 -8.220 -0.017 -6.874 -1.657 1.521 -2.507 -0.651 D 40 38 3 41 3 0 16 77 98 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 21 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - a - - - ML 42 41 3 44 3 1 21 78 98 -8.220 -0.017 -6.874 0.222 0.107 -0.608 0.138 D 43 41 3 44 3 0 15 76 97 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 20 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 45 44 3 47 3 1 20 77 97 -8.220 -0.017 -6.874 1.033 -1.290 -0.232 -0.529 D 46 44 3 47 3 0 15 75 96 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - g - - - ML 48 47 3 50 3 1 19 76 96 -8.220 -0.017 -6.874 -0.532 -1.160 0.631 0.392 D 49 47 3 50 3 0 14 74 94 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - - - ML 51 50 3 53 3 1 18 75 95 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 52 50 3 53 3 0 13 73 93 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 18 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - A - - - ML 54 53 3 56 3 1 18 74 94 -8.220 -0.017 -6.874 1.810 -2.890 -2.471 -2.485 D 55 53 3 56 3 0 13 72 92 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 17 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - U - - - ML 57 56 3 59 3 1 17 73 93 -8.220 -0.017 -6.874 -1.970 -1.884 -2.724 1.732 D 58 56 3 59 3 0 12 71 91 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 16 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - G - - - ML 60 59 3 62 3 1 16 72 92 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 61 59 3 62 3 0 11 70 90 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 15 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 63 62 3 65 3 1 15 71 91 -8.220 -0.017 -6.874 1.810 -2.890 -2.471 -2.485 D 64 62 3 65 3 0 10 69 89 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 15 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - a - - - ML 66 65 3 68 3 1 14 69 90 -8.220 -0.017 -6.874 0.772 -0.221 -1.134 -0.031 D 67 65 3 68 3 0 10 68 88 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 14 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - a - - - ML 69 68 3 71 3 1 13 68 88 -8.220 -0.061 -4.727 0.748 -0.732 -0.859 0.223 D 70 68 3 71 3 0 9 67 87 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 13 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - C - - - ML 72 71 3 74 3 1 13 67 87 -8.177 -0.018 -6.831 -0.879 1.233 -1.878 -0.262 D 73 71 3 74 3 0 8 66 86 -6.578 -2.091 -0.406 IL 74 74 3 74 3 1 12 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - c - - - ML 75 74 3 77 3 1 12 66 86 -8.177 -0.072 -4.470 -0.357 0.863 -1.490 0.064 D 76 74 3 77 3 0 8 65 85 -6.578 -1.063 -0.969 IL 77 77 3 77 3 1 12 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - u - - - ML 78 77 3 80 3 1 12 65 85 -8.168 -0.018 -6.822 -0.230 0.069 -1.008 0.679 D 79 77 3 80 3 0 7 64 84 -6.648 -2.162 -0.384 IL 80 80 3 80 3 1 11 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - a - - - ML 81 80 3 83 3 1 11 64 84 -8.168 -0.018 -6.822 0.817 -1.005 -1.161 0.370 D 82 80 3 83 3 0 6 63 83 -6.648 -2.162 -0.384 IL 83 83 3 83 3 1 10 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - a - - - ML 84 83 3 86 3 1 10 63 83 -8.168 -0.018 -6.822 0.940 -0.832 -1.143 0.094 D 85 83 3 86 3 0 6 62 82 -6.648 -0.989 -1.040 IL 86 86 3 86 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - U - - - ML 87 86 3 89 3 1 9 62 82 -8.220 -0.017 -6.874 -0.414 -0.812 -1.520 1.221 D 88 86 3 89 3 0 5 61 81 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 9 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - u - - - ML 90 89 3 92 3 1 8 61 81 -8.220 -0.056 -4.837 -0.016 0.185 -0.794 0.376 D 91 89 3 92 3 0 4 60 80 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - u - - - ML 93 92 3 95 3 1 8 60 80 -4.653 -0.184 -3.639 0.114 -0.466 -0.911 0.733 D 94 92 3 95 3 0 3 58 78 -6.544 -2.057 -0.417 IL 95 95 3 95 3 1 8 61 81 -1.577 -0.706 -4.277 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - u - - - ML 96 95 3 98 3 1 8 59 79 -8.074 -0.019 -6.728 0.083 -0.251 0.028 0.113 D 97 95 3 98 3 0 3 57 77 -7.217 -2.730 -0.247 IL 98 98 3 98 3 1 8 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - a - - - ML 99 98 3 101 3 1 7 58 78 -4.949 -0.062 -6.728 0.722 -0.905 -0.590 0.205 D 100 98 3 101 3 0 3 56 76 -7.217 -1.181 -0.857 IL 101 101 3 101 3 1 7 59 79 -1.542 -0.728 -4.242 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - G - - - ML 102 101 3 104 3 1 6 57 76 -8.158 -0.018 -6.812 -0.227 -1.596 1.167 -0.812 D 103 101 3 104 3 0 2 55 75 -6.722 -0.920 -1.114 IL 104 104 3 104 3 1 6 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - U - - - ML 105 104 3 107 3 1 5 56 75 -8.220 -0.017 -6.874 -0.745 -1.252 -1.820 1.433 D 106 104 3 107 3 0 0 54 74 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 5 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - G - - - ML 108 107 3 110 3 1 5 55 74 -8.220 -0.017 -6.874 -1.115 -2.022 1.469 -0.931 D 109 107 3 110 3 0 0 53 73 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 4 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 111 110 3 113 3 1 4 54 73 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 112 110 3 113 3 0 0 52 72 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 3 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 114 113 3 116 3 1 3 52 72 -8.220 -0.017 -6.874 1.498 -1.709 -1.664 -0.854 D 115 113 3 116 3 0 0 51 71 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 3 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - C - - - ML 117 116 3 119 3 1 2 51 71 -8.220 -0.141 -3.476 -0.794 1.040 -0.552 -0.546 D 118 116 3 119 3 0 0 50 70 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 3 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - A - - - ML 120 119 3 122 3 1 3 50 70 -8.098 -0.019 -6.752 1.555 -1.814 -1.693 -1.096 D 121 119 3 122 3 0 0 49 68 -7.098 -2.611 -0.270 IL 122 122 3 122 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 123 122 3 125 3 1 3 49 69 -4.906 -0.063 -6.752 -0.898 -0.071 -1.659 1.134 D 124 122 3 125 3 0 0 48 67 -7.098 -0.651 -1.490 IL 125 125 3 125 3 1 1 51 70 -1.547 -0.725 -4.247 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - c - - - ML 126 125 3 128 3 1 2 48 68 -8.220 -0.017 -6.874 -0.684 0.640 -1.276 0.492 D 127 125 3 128 3 0 0 47 66 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - u - - - ML 129 128 3 131 3 1 1 47 66 -8.220 -0.070 -4.511 -0.303 -0.817 0.010 0.691 D 130 128 3 131 3 0 0 46 65 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - a - - - ML 132 131 3 134 3 1 1 46 65 -8.168 -0.018 -6.822 0.261 -0.048 -0.622 0.245 D 133 131 3 134 3 0 0 45 64 -6.649 -0.988 -1.041 IL 134 134 3 134 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - U - - - ML 135 134 3 137 3 1 1 45 64 -8.220 -0.017 -6.874 -1.550 -1.261 -2.292 1.603 D 136 134 3 137 3 0 0 44 63 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - G - - - ML 138 137 3 140 3 1 1 44 63 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 139 137 3 140 3 0 0 43 62 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - G - - - ML 141 140 3 143 3 1 1 43 62 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 142 140 3 143 3 0 0 41 61 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - A - - - ML 144 143 3 146 3 1 1 42 61 -8.220 -0.017 -6.874 1.810 -2.890 -2.471 -2.485 D 145 143 3 146 3 0 0 40 60 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - U - - - ML 147 146 3 149 3 1 1 41 60 -8.220 -0.017 -6.874 -1.970 -1.884 -2.724 1.732 D 148 146 3 149 3 0 0 39 59 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - - - ML 150 149 3 152 3 1 1 40 59 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 151 149 3 152 3 0 0 38 58 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - A - - - ML 153 152 3 155 3 1 1 39 58 -8.220 -0.017 -6.874 1.810 -2.890 -2.471 -2.485 D 154 152 3 155 3 0 0 37 57 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - a - - - ML 156 155 3 158 3 1 1 37 57 -8.220 -0.017 -6.874 0.391 -0.605 -0.314 0.295 D 157 155 3 158 3 0 0 36 56 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - a - - - ML 159 158 3 161 3 1 1 36 56 -8.220 -0.017 -6.874 0.733 -0.868 -0.183 -0.139 D 160 158 3 161 3 0 0 35 55 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - a - - - ML 162 161 3 164 3 1 1 35 54 -8.220 -0.017 -6.874 0.462 0.342 -0.835 -0.332 D 163 161 3 164 3 0 0 34 53 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - a - - - ML 165 164 3 167 3 1 1 34 53 -8.220 -0.017 -6.874 0.521 -0.680 -0.870 0.479 D 166 164 3 167 3 0 0 33 52 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - U - - - ML 168 167 3 170 3 1 1 33 52 -8.220 -0.017 -6.874 -1.451 -1.086 -2.194 1.558 D 169 167 3 170 3 0 0 32 51 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - G - - - ML 171 170 3 173 3 1 1 32 51 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 172 170 3 173 3 0 0 31 50 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - C - - - ML 174 173 3 176 3 1 1 31 50 -8.220 -0.017 -6.874 -2.369 1.757 -3.200 -1.659 D 175 173 3 176 3 0 0 30 49 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - G - - - ML 177 176 3 179 3 1 1 30 49 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 178 176 3 179 3 0 0 29 48 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - G - - - ML 180 179 3 182 3 1 1 29 48 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 181 179 3 182 3 0 0 28 47 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - A - - - ML 183 182 3 185 3 1 1 28 47 -8.220 -0.017 -6.874 1.810 -2.890 -2.471 -2.485 D 184 182 3 185 3 0 0 27 46 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - U - - - ML 186 185 3 188 3 1 1 27 46 -8.220 -0.017 -6.874 -1.970 -1.884 -2.724 1.732 D 187 185 3 188 3 0 0 26 45 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - A - - - ML 189 188 3 191 3 1 1 26 44 -8.220 -0.017 -6.874 1.810 -2.890 -2.471 -2.485 D 190 188 3 191 3 0 0 25 44 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - U - - - ML 192 191 3 194 3 1 1 24 43 -8.220 -0.017 -6.874 -1.970 -1.884 -2.724 1.732 D 193 191 3 194 3 0 0 23 42 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - G - - - ML 195 194 3 197 3 1 1 23 42 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 196 194 3 197 3 0 0 22 41 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - G - - - ML 198 197 3 200 3 1 1 22 41 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 199 197 3 200 3 0 0 21 40 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - G - - - ML 201 200 3 203 3 1 1 21 40 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 202 200 3 203 3 0 0 20 39 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 65 - A - - - ML 204 203 3 206 3 1 1 20 38 -8.220 -0.017 -6.874 1.533 -2.003 -0.962 -1.539 D 205 203 3 206 3 0 0 19 38 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - C - - - ML 207 206 3 209 3 1 1 19 37 -8.220 -0.017 -6.874 -2.369 1.757 -3.200 -1.659 D 208 206 3 209 3 0 0 18 37 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - U - - - ML 210 209 3 212 3 1 1 17 36 -8.220 -0.017 -6.874 -1.970 -1.884 -2.724 1.732 D 211 209 3 212 3 0 0 17 36 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - G - - - ML 213 212 3 215 3 1 1 16 35 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 214 212 3 215 3 0 0 16 34 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - A - - - ML 216 215 3 218 3 1 1 15 33 -8.220 -0.017 -6.874 1.810 -2.890 -2.471 -2.485 D 217 215 3 218 3 0 0 15 33 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 70 - G - - - ML 219 218 3 221 3 1 1 13 31 -8.220 -0.017 -6.874 -2.116 -3.412 1.820 -2.798 D 220 218 3 221 3 0 0 13 32 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 71 - A - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 1.386 -1.225 -1.074 -1.048 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD99 ACC RF00608 DESC Small nucleolar RNA SNORD99 LENG 74 MAXL 156 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 14:22:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00608/CM NSEQ 23 EFFN 2.967651 CKSUM 3103451324 STATS LOCAL MSV -8.2192 0.71876 STATS LOCAL VITERBI -9.0147 0.71876 STATS LOCAL FORWARD -3.6605 0.71876 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31451 1.70824 1.21570 1.37157 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 0.00000 * 1 1.36649 1.69587 1.09767 1.47879 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.07182 4.13359 2.93218 1.46634 0.26236 1.09861 0.40547 2 3.40504 0.19409 3.20819 2.27516 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03386 4.09562 4.09562 1.46634 0.26236 0.47097 0.97923 3 3.22334 2.37859 2.99769 0.20139 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 4 2.76467 3.51635 0.13281 3.45265 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 5 1.53661 2.22530 0.61713 1.98512 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 6 2.21254 2.31686 2.39520 0.35547 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 7 2.64214 0.30318 3.23611 1.89043 7 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 8 1.23330 1.29919 1.81447 1.29831 8 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 9 0.65318 2.32151 1.54626 1.78115 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 10 1.79609 2.23493 0.92228 1.11035 10 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 11 2.98293 3.89639 0.10770 3.46909 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 12 0.11465 3.51987 3.21733 3.25300 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 13 2.87640 2.79583 3.40318 0.16331 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 14 2.98293 3.89639 0.10770 3.46909 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 15 0.11465 3.51987 3.21733 3.25300 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 16 0.83657 1.53552 2.20640 1.42145 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 17 0.85427 1.91128 2.00110 1.23331 17 a - - _ 1.38629 1.38629 1.38629 1.38629 0.06636 4.13359 3.03271 1.46634 0.26236 1.09861 0.40547 18 2.05110 0.50043 2.76410 1.59898 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03368 4.10090 4.10090 1.46634 0.26236 1.61080 0.22280 19 1.65978 0.75993 2.47216 1.35590 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.07602 4.10090 2.87089 1.46634 0.26236 0.50992 0.91765 20 1.56134 1.32714 2.10446 0.90882 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03391 4.09402 4.09402 1.46634 0.26236 1.69033 0.20390 21 0.80442 2.11791 2.22704 1.12540 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03391 4.09402 4.09402 1.46634 0.26236 1.69033 0.20390 22 0.71686 1.98504 2.21429 1.32761 22 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03391 4.09402 4.09402 1.46634 0.26236 0.46032 0.99718 23 1.69973 1.98210 2.49335 0.51608 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 24 1.40503 1.24378 1.94810 1.12762 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06310 4.13359 3.09822 1.46634 0.26236 1.09861 0.40547 25 1.30760 1.71874 2.03263 0.86929 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.16480 2.87264 2.34977 0.50737 0.92149 1.57197 0.23273 26 1.33571 1.55685 1.35498 1.31574 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03650 4.02188 4.02188 1.46634 0.26236 2.26129 0.11006 27 0.87424 2.03855 1.80464 1.24456 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07011 2.99995 4.02188 0.61022 0.78357 0.70952 0.67703 28 1.56836 2.54612 0.55032 1.99169 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03418 4.08641 4.08641 1.46634 0.26236 0.41610 1.07767 29 1.94828 2.31881 2.72399 0.36604 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 30 2.23776 2.87309 0.34044 2.07687 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 31 2.98293 3.89639 0.10770 3.46909 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 32 0.32562 2.63510 2.61045 2.01963 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 33 2.00645 0.62552 1.77927 1.82145 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.12956 4.13359 2.24913 1.46634 0.26236 1.09861 0.40547 34 0.28587 2.71326 2.63331 2.20294 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03583 4.03987 4.03987 1.46634 0.26236 2.14976 0.12388 35 2.06715 1.43330 2.59800 0.57890 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.07061 2.98431 4.03987 0.59252 0.80504 0.26530 1.45662 36 1.90491 0.91739 2.30669 1.04408 39 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 37 1.61860 1.97671 1.36633 0.89586 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.07357 4.13359 2.90218 1.46634 0.26236 1.09861 0.40547 38 1.20458 1.41187 1.82420 1.22028 41 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09394 4.09394 1.46634 0.26236 0.45980 0.99807 39 2.55375 2.31644 3.07018 0.25209 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 40 2.98293 3.89639 0.10770 3.46909 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 41 2.98293 3.89639 0.10770 3.46909 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 42 0.11465 3.51987 3.21733 3.25300 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 43 2.87640 2.79583 3.40318 0.16331 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 44 2.98293 3.89639 0.10770 3.46909 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 45 0.11465 3.51987 3.21733 3.25300 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 46 1.11119 1.81691 1.60267 1.18108 49 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 47 0.86776 2.00596 1.51022 1.49292 50 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 48 1.05946 1.12973 1.98368 1.64675 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 49 1.01611 1.87442 2.00632 1.04961 52 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 50 2.48077 2.18537 2.99709 0.28242 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 51 2.98293 3.89639 0.10770 3.46909 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 52 3.18535 0.14428 3.75768 2.66428 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 53 2.98293 3.89639 0.10770 3.46909 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 54 2.98293 3.89639 0.10770 3.46909 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 55 0.11465 3.51987 3.21733 3.25300 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 56 2.87640 2.79583 3.40318 0.16331 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 57 0.11465 3.51987 3.21733 3.25300 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 58 2.87640 2.79583 3.40318 0.16331 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 59 2.98293 3.89639 0.10770 3.46909 62 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 60 2.98293 3.89639 0.10770 3.46909 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 61 2.98293 3.89639 0.10770 3.46909 64 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 62 0.30330 2.85472 2.07560 2.54380 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 63 3.18535 0.14428 3.75768 2.66428 66 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 64 2.87640 2.79583 3.40318 0.16331 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 65 2.98293 3.89639 0.10770 3.46909 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 66 0.11465 3.51987 3.21733 3.25300 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 67 2.98293 3.89639 0.10770 3.46909 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 68 0.40386 2.26424 2.16541 2.17464 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 69 2.35521 0.72886 1.92127 1.28646 72 c - - > 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 70 3.60191 0.16101 3.34029 2.45316 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 71 0.23873 3.15927 2.20454 2.81980 74 A - - > 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 72 2.52159 3.33689 0.17439 3.12013 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 73 1.76591 1.06728 1.53447 1.31135 76 c - - > 1.38629 1.38629 1.38629 1.38629 0.03258 4.13359 4.13359 1.46634 0.26236 1.09861 0.40547 74 1.52529 1.36799 2.00881 0.93223 77 u - - : 1.38629 1.38629 1.38629 1.38629 0.01642 4.11744 * 1.46634 0.26236 0.00000 * //