INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD78 ACC RF00592 DESC Small nucleolar RNA SNORD78 STATES 199 NODES 67 CLEN 65 W 142 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 12:38:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00592/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 4.457764 CKSUM 3216297707 NULL 0.000 0.000 0.000 0.000 GA 38.00 TC 38.10 NC 37.90 EFP7GF -8.8291 0.71884 ECMLC 0.65011 -9.22620 0.67002 1600000 746882 0.001607 ECMGC 0.36999 -17.03245 -1.83190 1600000 110799 0.003610 ECMLI 0.48684 -10.08038 2.00830 1600000 431615 0.002780 ECMGI 0.42747 -8.56989 3.34897 1600000 65279 0.006128 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 142 224 -7.729 -7.936 -0.110 -3.945 IL 1 1 2 1 4 1 27 144 226 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 144 225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 26 142 224 -5.986 -0.046 -5.986 -0.609 -0.267 -0.548 0.871 D 4 2 3 5 3 0 22 140 222 -12.595 -0.564 -1.629 IL 5 5 3 5 3 2 27 149 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 25 141 222 -6.057 -0.044 -6.057 -2.663 -2.164 -2.856 1.799 D 7 5 3 8 3 0 20 138 219 -11.551 -1.585 -0.585 IL 8 8 3 8 3 2 27 148 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 24 140 221 -6.057 -0.044 -6.057 -0.162 -2.288 1.401 -1.940 D 10 8 3 11 3 0 20 137 218 -11.551 -1.585 -0.585 IL 11 11 3 11 3 2 26 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 23 138 220 -6.057 -0.044 -6.057 -0.466 -0.063 -1.221 0.919 D 13 11 3 14 3 0 19 135 216 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 25 145 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 23 137 218 -6.057 -0.044 -6.057 1.883 -3.446 -3.117 -3.243 D 16 14 3 17 3 0 18 134 215 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 24 144 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 22 136 217 -6.057 -0.044 -6.057 1.883 -3.446 -3.117 -3.243 D 19 17 3 20 3 0 18 133 213 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 23 143 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 21 134 215 -6.057 -0.044 -6.057 -2.663 -2.164 -2.856 1.799 D 22 20 3 23 3 0 17 131 212 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 22 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 20 133 214 -6.057 -0.044 -6.057 -1.363 -2.928 1.730 -2.619 D 25 23 3 26 3 0 16 130 211 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 22 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 19 132 213 -6.057 -0.044 -6.057 1.883 -3.446 -3.117 -3.243 D 28 26 3 29 3 0 16 129 209 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 21 139 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 18 131 211 -6.057 -0.044 -6.057 -2.663 -2.164 -2.856 1.799 D 31 29 3 32 3 0 15 128 208 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 20 138 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 17 129 210 -6.057 -0.044 -6.057 -2.471 -3.511 1.858 -3.238 D 34 32 3 35 3 0 14 127 207 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 19 136 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 16 128 208 -6.057 -0.187 -3.232 -1.894 -1.710 -1.272 1.590 D 37 35 3 38 3 0 14 126 206 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 18 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 16 127 207 -5.919 -0.049 -5.919 -2.371 -1.921 -2.556 1.754 D 40 38 3 41 3 0 13 125 205 -13.150 -0.359 -2.184 IL 41 41 3 41 3 1 17 134 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 15 126 205 -6.057 -0.108 -4.131 -1.164 -0.482 1.184 -0.823 D 43 41 3 44 3 0 11 123 203 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 17 133 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - a - - - ML 45 44 3 47 3 1 15 124 204 -5.995 -0.046 -5.995 0.965 -0.410 -1.127 -0.254 D 46 44 3 47 3 0 11 122 202 -12.502 -0.610 -1.536 IL 47 47 3 47 3 1 16 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 14 123 203 -6.057 -0.044 -6.057 -0.676 -0.565 -0.832 1.095 D 49 47 3 50 3 0 9 120 199 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 16 130 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 13 122 201 -6.057 -0.044 -6.057 -2.908 1.819 -3.154 -2.146 D 52 50 3 53 3 0 8 119 198 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 15 129 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 13 120 200 -6.057 -0.044 -6.057 1.684 -2.539 -1.309 -2.246 D 55 53 3 56 3 0 8 117 196 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 14 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 12 119 198 -6.057 -0.044 -6.057 1.883 -3.446 -3.117 -3.243 D 58 56 3 59 3 0 7 116 195 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 14 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 11 118 197 -6.057 -0.044 -6.057 1.883 -3.446 -3.117 -3.243 D 61 59 3 62 3 0 6 115 193 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 13 125 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 63 62 3 65 3 1 11 116 195 -6.057 -0.044 -6.057 -2.663 -2.164 -2.856 1.799 D 64 62 3 65 3 0 6 113 192 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 12 124 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 66 65 3 68 3 1 10 115 194 -6.057 -0.044 -6.057 -1.198 -2.844 1.701 -2.527 D 67 65 3 68 3 0 5 112 190 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 12 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 10 114 192 -6.057 -0.044 -6.057 -2.663 -2.164 -2.856 1.799 D 70 68 3 71 3 0 5 111 189 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 11 121 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 72 71 3 74 3 1 9 112 191 -6.057 -0.044 -6.057 -2.908 1.819 -3.154 -2.146 D 73 71 3 74 3 0 4 109 187 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 10 120 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 8 111 189 -6.057 -0.044 -6.057 -2.663 -2.164 -2.856 1.799 D 76 74 3 77 3 0 3 108 186 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 10 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 78 77 3 80 3 1 8 110 188 -6.057 -0.044 -6.057 -1.727 -2.508 1.673 -1.583 D 79 77 3 80 3 0 3 107 184 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 9 117 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 7 108 186 -6.057 -0.044 -6.057 1.683 -2.536 -1.304 -2.242 D 82 80 3 83 3 0 2 105 183 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 9 116 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 84 83 3 86 3 1 7 107 185 -6.057 -0.044 -6.057 -1.930 1.517 -1.448 -0.973 D 85 83 3 86 3 0 2 104 181 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 8 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 87 86 3 89 3 1 6 106 183 -6.057 -0.044 -6.057 -2.472 1.667 -2.734 -1.016 D 88 86 3 89 3 0 1 102 180 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 7 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 6 104 182 -6.057 -0.044 -6.057 -1.906 -1.717 -1.295 1.595 D 91 89 3 92 3 0 1 101 178 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 7 112 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - G - - - ML 93 92 3 95 3 1 5 103 180 -6.057 -0.044 -6.057 -0.827 -2.652 1.622 -2.321 D 94 92 3 95 3 0 1 100 177 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 6 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 96 95 3 98 3 1 4 102 179 -6.057 -0.044 -6.057 1.883 -3.446 -3.117 -3.243 D 97 95 3 98 3 0 0 98 175 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 5 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 99 98 3 101 3 1 4 100 177 -6.057 -0.044 -6.057 1.883 -3.446 -3.117 -3.243 D 100 98 3 101 3 0 0 97 174 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 5 108 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 102 101 3 104 3 1 3 99 176 -6.057 -0.044 -6.057 1.272 -1.899 -0.034 -1.555 D 103 101 3 104 3 0 0 96 172 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 4 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - u - - - ML 105 104 3 107 3 1 2 97 174 -6.057 -0.117 -3.991 -0.249 -0.502 -0.638 0.856 D 106 104 3 107 3 0 0 95 171 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 4 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - g - - - ML 108 107 3 110 3 1 2 96 173 -5.986 -0.046 -5.986 -0.319 -0.811 0.811 -0.194 D 109 107 3 110 3 0 0 94 170 -12.595 -0.564 -1.629 IL 110 110 3 110 3 1 3 104 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - A - - - ML 111 110 3 113 3 1 2 95 171 -6.057 -0.044 -6.057 1.557 -1.858 -1.984 -0.921 D 112 110 3 113 3 0 0 91 167 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 3 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - G - - - ML 114 113 3 116 3 1 2 93 169 -6.057 -0.044 -6.057 -0.511 -0.691 1.044 -0.697 D 115 113 3 116 3 0 0 90 166 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - C - - - ML 117 116 3 119 3 1 2 92 168 -6.057 -0.044 -6.057 -1.981 1.311 -2.199 0.067 D 118 116 3 119 3 0 0 89 164 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 2 100 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 120 119 3 122 3 1 1 90 166 -4.131 -0.108 -6.057 1.359 -1.472 -0.982 -0.817 D 121 119 3 122 3 0 0 87 163 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 2 90 166 -3.936 -0.098 -11.580 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - U - - - ML 123 122 3 125 3 1 1 89 165 -6.057 -0.044 -6.057 -2.663 -2.164 -2.856 1.799 D 124 122 3 125 3 0 0 86 161 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - G - - - ML 126 125 3 128 3 1 1 88 163 -6.057 -0.044 -6.057 -1.198 -2.844 1.701 -2.527 D 127 125 3 128 3 0 0 84 160 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 2 96 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - U - - - ML 129 128 3 131 3 1 1 86 162 -6.057 -0.044 -6.057 -2.663 -2.164 -2.856 1.799 D 130 128 3 131 3 0 0 83 158 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - - - ML 132 131 3 134 3 1 1 85 160 -6.057 -0.044 -6.057 1.353 -1.460 -0.987 -0.792 D 133 131 3 134 3 0 0 82 156 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - - - ML 135 134 3 137 3 1 1 83 158 -6.057 -0.044 -6.057 -2.471 -3.511 1.858 -3.238 D 136 134 3 137 3 0 0 80 155 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 92 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - A - - - ML 138 137 3 140 3 1 1 82 157 -6.057 -0.044 -6.057 1.883 -3.446 -3.117 -3.243 D 139 137 3 140 3 0 0 79 153 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - C - - - ML 141 140 3 143 3 1 1 80 155 -6.057 -0.044 -6.057 -1.056 1.298 -1.799 -0.373 D 142 140 3 143 3 0 0 77 151 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 89 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - A - - - ML 144 143 3 146 3 1 1 79 153 -6.057 -0.044 -6.057 1.269 -0.817 -1.415 -0.627 D 145 143 3 146 3 0 0 76 150 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - A - - - ML 147 146 3 149 3 1 1 77 151 -1.783 -0.584 -4.561 1.312 -1.400 -0.943 -0.694 D 148 146 3 149 3 0 0 74 148 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 2 78 152 -1.560 -0.598 -14.766 0.000 0.000 0.000 0.000 [ MATL 50 ] 55 - a - - - ML 150 149 3 152 3 1 1 76 150 -6.017 -0.045 -6.017 0.596 -1.003 -0.071 0.053 D 151 149 3 152 3 0 0 73 147 -12.235 -0.774 -1.269 IL 152 152 3 152 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 56 - u - - - ML 153 152 3 155 3 1 1 74 148 -6.057 -0.044 -6.057 -0.924 -0.265 -0.133 0.790 D 154 152 3 155 3 0 0 71 144 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 57 - U - - - ML 156 155 3 158 3 1 1 73 146 -6.057 -0.184 -3.255 -0.443 -0.767 -0.803 1.073 D 157 155 3 158 3 0 0 70 143 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 58 - U - - - ML 159 158 3 161 3 1 1 71 145 -5.921 -0.048 -5.921 -1.804 -0.744 -2.009 1.520 D 160 158 3 161 3 0 0 68 141 -13.132 -1.708 -0.527 IL 161 161 3 161 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 59 - A - - - ML 162 161 3 164 3 1 1 70 143 -5.962 -0.047 -5.962 1.041 -1.103 -0.600 -0.293 D 163 161 3 164 3 0 0 67 140 -12.819 -0.468 -1.854 IL 164 164 3 164 3 1 1 79 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - a - - - ML 165 164 3 167 3 1 1 68 141 -6.057 -0.044 -6.057 0.762 -0.694 -0.093 -0.419 D 166 164 3 167 3 0 0 64 136 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - c - - - ML 168 167 3 170 3 1 1 66 139 -6.057 -0.044 -6.057 -1.743 0.874 -1.943 0.686 D 169 167 3 170 3 0 0 62 134 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - A - - - ML 171 170 3 173 3 1 1 64 136 -6.057 -0.044 -6.057 1.029 -1.137 -0.551 -0.282 D 172 170 3 173 3 0 0 60 132 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - C - - - ML 174 173 3 176 3 1 1 63 134 -6.057 -0.044 -6.057 -2.908 1.819 -3.154 -2.146 D 175 173 3 176 3 0 0 58 130 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - U - - - ML 177 176 3 179 3 1 1 61 132 -6.057 -0.044 -6.057 -2.663 -2.164 -2.856 1.799 D 178 176 3 179 3 0 0 56 127 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - G - - - ML 180 179 3 182 3 1 1 59 130 -6.057 -0.044 -6.057 -2.471 -3.511 1.858 -3.238 D 181 179 3 182 3 0 0 54 124 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - A - - - ML 183 182 3 185 3 1 1 56 127 -6.057 -0.044 -6.057 1.883 -3.446 -3.117 -3.243 D 184 182 3 185 3 0 0 51 121 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 67 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - A - - - ML 186 185 3 188 3 1 1 54 124 -6.057 -0.117 -3.991 1.883 -3.446 -3.117 -3.243 D 187 185 3 188 3 0 0 48 118 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 68 - G - - - ML 189 188 3 191 3 1 1 51 121 -5.986 -0.046 -5.986 -0.455 -2.349 1.499 -2.007 D 190 188 3 191 3 0 0 41 110 -12.595 -2.629 -0.255 IL 191 191 3 191 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 69 - A - - - ML 192 191 3 194 3 1 1 47 117 -5.986 -0.046 -5.986 1.235 -1.282 -0.819 -0.584 D 193 191 3 194 3 0 0 29 98 -12.595 -0.564 -1.629 IL 194 194 3 194 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 70 - A - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 1.381 -1.992 -0.274 -1.654 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 66 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD78 ACC RF00592 DESC Small nucleolar RNA SNORD78 LENG 65 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sun Jul 7 12:38:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00592/CM NSEQ 19 EFFN 4.457764 CKSUM 3216297707 STATS LOCAL MSV -7.9209 0.71884 STATS LOCAL VITERBI -8.7216 0.71884 STATS LOCAL FORWARD -3.6301 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.10958 1.78115 1.51133 1.26855 1.38629 1.38629 1.38629 1.38629 0.07258 5.35715 2.72890 0.39730 1.11515 0.00000 * 1 1.80851 1.57127 1.76622 0.78232 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03206 4.14933 4.14933 1.46634 0.26236 0.39056 1.12911 2 3.23246 2.88639 3.36605 0.13899 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 3 1.49883 2.97255 0.41506 2.73130 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 4 1.70948 1.43016 2.23288 0.74961 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 5 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 6 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 7 3.23246 2.88639 3.36605 0.13899 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 8 2.33088 3.41603 0.18725 3.20132 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 9 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 10 3.23246 2.88639 3.36605 0.13899 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 11 3.09901 3.81964 0.09819 3.63077 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 12 2.69888 2.57177 2.26831 0.28391 - U - - : 1.38629 1.38629 1.38629 1.38629 0.12950 4.19837 2.24011 1.46634 0.26236 1.09861 0.40547 13 3.02968 2.71807 3.15821 0.17059 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10249 4.10249 1.46634 0.26236 0.24858 1.51369 14 2.19302 1.72039 0.56539 1.95696 - G - - : 1.38629 1.38629 1.38629 1.38629 0.07484 4.19837 2.86320 1.46634 0.26236 1.09861 0.40547 15 0.71771 1.67073 2.16779 1.56261 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03186 4.15539 4.15539 1.46634 0.26236 0.42280 1.06482 16 1.85495 1.77758 1.96293 0.62727 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 17 3.40193 0.12543 3.57264 2.87369 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 18 0.21892 3.14590 2.29383 2.94297 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 19 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 20 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 21 3.23246 2.88639 3.36605 0.13899 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 22 2.21703 3.35726 0.20719 3.13786 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 23 3.23246 2.88639 3.36605 0.13899 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 24 3.40193 0.12543 3.57264 2.87369 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 25 3.23246 2.88639 3.36605 0.13899 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 26 2.58306 3.12483 0.22681 2.48358 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 27 0.21966 3.14377 2.29005 2.94065 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 28 2.72435 0.33496 2.38968 2.06052 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 29 3.09975 0.23099 3.28119 2.09065 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 30 2.70738 2.57669 2.28373 0.28056 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 31 1.95970 3.22423 0.26229 2.99517 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 32 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 33 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 34 0.50464 2.70279 1.40996 2.46386 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 35 1.55908 1.73394 1.82834 0.79318 - u - - : 1.38629 1.38629 1.38629 1.38629 0.08109 4.19837 2.76667 1.46634 0.26236 1.09861 0.40547 36 1.60771 1.94820 0.82407 1.52106 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03206 4.14933 4.14933 1.46634 0.26236 0.39056 1.12911 37 0.30672 2.67423 2.76181 2.02488 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 38 1.74019 1.86538 0.66276 1.86920 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 39 2.75908 0.47750 2.91069 1.33988 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 40 0.44418 2.40627 2.06707 1.95235 - A - - : 1.38629 1.38629 1.38629 1.38629 0.07484 2.86320 4.19837 0.06758 2.72806 1.09861 0.40547 41 3.23246 2.88639 3.36605 0.13899 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 42 2.21703 3.35726 0.20719 3.13786 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 43 3.23246 2.88639 3.36605 0.13899 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 44 0.44850 2.39826 2.07039 1.93517 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 45 3.09901 3.81964 0.09819 3.63077 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 46 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 47 2.11811 0.48639 2.63360 1.64464 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 48 0.50675 1.95269 2.36708 1.82076 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 49 0.47702 2.35636 2.04001 1.86705 - A - - : 1.38629 1.38629 1.38629 1.38629 0.40483 1.23594 3.16178 0.41426 1.08125 1.09861 0.40547 50 0.97314 2.08125 1.43533 1.34980 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03137 4.17066 4.17066 1.46634 0.26236 0.53610 0.87954 51 2.02651 1.56996 1.47852 0.83892 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 52 1.69304 1.91798 1.94294 0.64273 - U - - : 1.38629 1.38629 1.38629 1.38629 0.12757 4.19837 2.25624 1.46634 0.26236 1.09861 0.40547 53 2.63669 1.90234 2.77863 0.33260 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03356 4.10436 4.10436 1.46634 0.26236 1.18403 0.36535 54 0.66455 2.15056 1.80201 1.58910 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13277 4.13277 1.46634 0.26236 0.32397 1.28472 55 0.85791 1.86722 1.45066 1.67672 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 56 2.59411 0.78051 2.73305 0.91107 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 57 0.67332 2.17453 1.76794 1.58164 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 58 3.40193 0.12543 3.57264 2.87369 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 59 3.23246 2.88639 3.36605 0.13899 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 60 3.09901 3.81964 0.09819 3.63077 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 61 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03050 4.19837 4.19837 1.46634 0.26236 1.09861 0.40547 62 0.08137 3.77519 3.54690 3.63446 - A - - : 1.38629 1.38629 1.38629 1.38629 0.08109 4.19837 2.76667 1.46634 0.26236 1.09861 0.40547 63 1.70193 3.01424 0.34760 2.77736 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03206 4.14933 4.14933 1.46634 0.26236 1.82226 0.17633 64 0.52998 2.27488 1.95369 1.79082 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03206 4.14933 4.14933 1.46634 0.26236 0.39056 1.12911 65 0.42930 2.76701 1.57619 2.53293 - A - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //