INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD77 ACC RF00591 DESC Small nucleolar RNA SNORD77 STATES 213 NODES 56 CLEN 68 W 86 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 16:00:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00591/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 21 EFFN 2.607056 CKSUM 107903124 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -9.7684 0.71903 ECMLC 0.62713 -5.41494 3.85980 1600000 402929 0.002978 ECMGC 0.39590 -14.14715 -0.67371 1600000 82917 0.004824 ECMLI 0.58188 -4.11628 5.46637 1600000 316807 0.003788 ECMGI 0.44067 -8.94472 2.57404 1600000 64050 0.006245 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 86 108 -7.099 -8.345 -0.068 -4.798 IL 1 1 2 1 4 1 25 87 109 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 26 88 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 75 - U - - MR 3 2 3 5 3 2 26 86 108 -8.578 -0.053 -4.897 -1.154 -1.280 -1.575 1.487 D 4 2 3 5 3 0 21 84 106 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 25 87 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 74 - C - - MR 6 5 3 8 5 2 26 85 107 -7.268 -0.035 -7.083 -7.295 -8.187 -1.762 1.585 -2.602 -0.886 D 7 5 3 8 5 0 20 84 105 -5.537 -0.892 -2.107 -4.595 -2.589 IR 8 8 3 8 5 1 24 85 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 73 A U - - MP 9 8 3 13 6 3 25 84 106 -9.192 -9.132 -0.020 -7.908 -8.188 -8.583 -3.606 -3.027 -1.919 3.353 -3.960 -4.736 -0.026 -3.831 -3.723 0.939 -4.258 -0.363 -0.277 -3.953 -1.813 -2.667 ML 10 8 3 13 6 1 21 82 104 -6.479 -6.825 -1.539 -0.806 -6.675 -4.204 0.752 -0.651 -0.365 -0.148 MR 11 8 3 13 6 1 21 82 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 16 80 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 23 84 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 23 83 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 72 U A - - MP 15 14 6 19 6 3 23 82 104 -9.192 -9.132 -0.020 -7.908 -8.188 -8.583 -3.963 -3.927 -3.814 -0.194 -2.716 -4.357 1.793 -3.444 -3.832 0.030 -4.207 -1.935 3.085 -4.090 0.082 -2.691 ML 16 14 6 19 6 1 20 81 102 -6.479 -6.825 -1.027 -1.234 -6.675 -4.204 0.101 -0.378 -0.489 0.531 MR 17 14 6 19 6 1 19 81 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 16 78 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 21 82 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 21 81 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 71 A U - - MP 21 20 6 25 6 3 21 80 102 -9.210 -9.149 -0.020 -7.925 -8.205 -8.600 -4.237 -3.162 -4.214 3.558 -4.787 -5.901 -0.456 -4.225 -4.097 0.596 -4.666 -0.573 -0.871 -5.007 -2.395 -3.028 ML 22 20 6 25 6 1 19 79 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 18 79 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 16 77 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 20 80 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 20 79 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 70 C G - - MP 27 26 6 31 4 2 20 78 100 -7.202 -7.409 -0.044 -5.823 -4.558 -4.549 -4.243 -0.738 -2.915 -4.642 3.500 -3.732 -4.286 -0.544 -4.559 -2.547 0.628 -4.606 0.064 -3.115 ML 28 26 6 31 4 1 18 78 100 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 17 78 99 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 15 76 98 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 19 79 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 19 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 5 - U - - - ML 33 32 6 35 3 1 18 76 98 -8.578 -0.016 -6.895 -0.349 -0.840 -1.168 1.145 D 34 32 6 35 3 0 15 75 96 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 17 77 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 69 - U - - MR 36 35 3 38 3 1 17 75 97 -8.578 -0.016 -6.895 -1.935 -1.854 -2.688 1.725 D 37 35 3 38 3 0 13 73 95 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 17 76 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - A - - MR 39 38 3 41 3 1 16 74 96 -8.578 -0.016 -6.895 1.669 -2.297 -1.544 -1.869 D 40 38 3 41 3 0 13 72 94 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 16 75 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - G - - MR 42 41 3 44 3 1 15 73 95 -8.578 -0.016 -6.895 -2.079 -3.370 1.815 -2.756 D 43 41 3 44 3 0 12 71 93 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 15 74 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 66 - U - - MR 45 44 3 47 3 1 14 72 93 -8.578 -0.016 -6.895 -1.935 -1.854 -2.688 1.725 D 46 44 3 47 3 0 11 70 92 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 73 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 65 - C - - MR 48 47 3 50 3 1 13 71 92 -8.578 -0.016 -6.895 -2.324 1.750 -3.155 -1.622 D 49 47 3 50 3 0 11 69 91 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 72 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 64 - U - - MR 51 50 3 53 3 1 12 70 91 -8.578 -0.016 -6.895 -1.935 -1.854 -2.688 1.725 D 52 50 3 53 3 0 10 68 90 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 12 71 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 63 - G - - MR 54 53 3 56 2 1 11 69 90 -8.637 -0.004 0.041 -1.573 1.056 -0.846 D 55 53 3 56 2 0 10 68 90 -4.432 -0.068 IR 56 56 3 56 2 1 11 70 91 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 57 56 3 58 159 0 10 68 89 [ BEGL 16 ] - - - - - - S 58 57 1 59 4 0 0 50 71 -0.067 -5.293 -6.375 -7.015 [ MATP 17 ] 6 43 a u - - MP 59 58 1 63 6 2 2 50 71 -9.190 -9.129 -0.020 -7.906 -8.186 -8.581 -3.456 -2.494 -3.530 2.643 -4.111 -4.667 0.165 -3.786 -3.485 2.058 -4.002 1.194 -0.085 -3.827 -1.730 -2.411 ML 60 58 1 63 6 1 1 48 70 -6.505 -6.851 -1.565 -0.787 -6.701 -4.230 0.200 -0.676 0.417 -0.167 MR 61 58 1 63 6 1 1 48 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 1 63 6 0 0 46 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 50 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 49 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 7 42 u a - - MP 65 64 6 69 6 2 2 48 69 -9.190 -9.129 -0.041 -5.734 -8.186 -8.581 -2.450 -2.536 -2.584 0.721 -2.250 -3.389 1.620 -2.722 -2.626 0.841 -3.161 -0.890 2.407 -0.665 0.540 -1.702 ML 66 64 6 69 6 1 1 46 68 -6.505 -6.851 -1.565 -0.787 -6.701 -4.230 0.077 -0.384 -0.516 0.565 MR 67 64 6 69 6 1 1 46 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 44 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 48 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 47 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 8 41 G C - - MP 71 70 6 75 6 2 2 46 67 -9.169 -6.047 -0.040 -7.885 -8.164 -8.559 -3.374 -2.451 -3.413 0.976 -3.838 -4.032 0.375 -3.821 -3.491 3.040 -1.501 0.827 0.112 -3.386 -1.489 -2.430 ML 72 70 6 75 6 1 1 44 66 -6.734 -7.080 -1.230 -0.990 -6.930 -4.460 0.019 -0.871 0.712 -0.318 MR 73 70 6 75 6 1 1 44 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 42 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 46 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 45 67 -2.523 -0.452 -6.034 -4.202 -5.308 0.000 0.000 0.000 0.000 [ MATP 20 ] 9 39 A U - - MP 77 76 6 81 6 2 2 44 65 -9.189 -9.128 -0.020 -7.905 -8.184 -8.579 -3.741 -1.239 -3.778 3.362 -4.362 -5.127 -0.232 -3.954 -3.745 1.082 -4.301 -0.406 -0.485 -4.256 -2.082 -2.693 ML 78 76 6 81 6 1 1 43 64 -6.520 -6.866 -0.985 -1.275 -6.716 -4.246 0.794 -0.683 -0.404 -0.173 MR 79 76 6 81 6 1 1 43 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 41 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 44 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 43 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 10 38 u a - - MP 83 82 6 87 4 2 2 42 63 -7.202 -3.684 -0.156 -5.823 -3.665 -3.657 -3.586 0.018 -2.605 -4.192 1.853 -3.296 -3.600 0.205 -4.013 -1.712 2.682 -3.834 1.349 -2.503 ML 84 82 6 87 4 1 1 42 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 41 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 86 82 6 87 4 0 0 40 62 -4.568 -4.250 -2.265 -0.520 IL 87 87 5 87 4 1 1 43 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 43 64 -1.241 -0.898 -4.644 0.000 0.000 0.000 0.000 [ MATL 22 ] 11 - G - - - ML 89 88 6 91 3 1 1 37 56 -8.202 -0.017 -6.856 -0.409 -2.178 1.431 -1.606 D 90 88 6 91 3 0 0 36 55 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 12 - G - - - ML 92 91 3 94 3 1 1 36 55 -8.578 -0.056 -4.823 -0.432 -0.984 1.086 -0.665 D 93 91 3 94 3 0 0 35 54 -5.620 -0.734 -1.403 IL 94 94 3 94 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 34 - A - - MR 95 94 3 97 3 1 1 35 54 -8.538 -0.016 -6.856 1.152 -0.975 -0.972 -0.398 D 96 94 3 97 3 0 0 34 52 -6.726 -1.074 -0.956 IR 97 97 3 97 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 33 - G - - MR 98 97 3 100 3 1 1 34 53 -8.578 -0.058 -4.757 -0.606 -1.639 1.253 -0.647 D 99 97 3 100 3 0 0 32 51 -6.390 -1.568 -0.620 IR 100 100 3 100 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 32 - U - - MR 101 100 3 103 3 1 1 33 52 -4.720 -0.069 -6.853 -0.495 -0.986 -0.811 1.148 D 102 100 3 103 3 0 0 31 50 -6.744 -1.922 -0.461 IR 103 103 3 103 3 1 1 34 52 -2.102 -0.478 -4.341 0.000 0.000 0.000 0.000 [ MATR 27 ] - 30 - U - - MR 104 103 3 106 3 1 1 32 51 -8.536 -0.016 -6.853 -1.850 -1.783 -2.599 1.708 D 105 103 3 106 3 0 0 30 49 -6.744 -1.055 -0.974 IR 106 106 3 106 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 29 - A - - MR 107 106 3 109 5 1 1 31 50 -7.303 -0.034 -7.118 -7.330 -8.222 1.805 -2.853 -2.437 -2.444 D 108 106 3 109 5 0 0 30 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 109 109 3 109 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 13 28 U G - - MP 110 109 3 114 6 2 2 30 49 -9.210 -9.149 -0.020 -7.925 -8.205 -8.600 -4.527 -4.563 -4.127 -0.854 -2.739 -4.460 1.762 -3.568 -4.187 -0.705 -4.429 -2.662 0.660 -4.538 3.172 -3.032 ML 111 109 3 114 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 3 114 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 3 114 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 14 27 U A - - MP 116 115 6 120 6 2 2 28 47 -9.210 -9.149 -0.020 -7.925 -8.205 -8.600 -4.778 -4.613 -4.549 -0.871 -3.374 -5.057 0.963 -4.107 -4.549 -0.691 -4.892 -2.494 3.549 -4.903 -1.036 -3.305 ML 117 115 6 120 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 15 26 G C - - MP 122 121 6 126 6 2 2 26 45 -9.210 -9.149 -0.020 -7.925 -8.205 -8.600 -5.207 -3.319 -5.365 -0.119 -5.885 -4.870 -1.133 -5.630 -4.618 3.732 -4.924 -1.040 -1.507 -4.769 -3.198 -4.235 ML 123 121 6 126 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 16 25 C G - - MP 128 127 6 132 4 2 2 24 43 -7.202 -7.409 -0.044 -5.823 -3.254 -3.311 -3.290 0.179 -1.106 -3.998 3.108 -0.826 -3.312 0.278 -3.783 -1.512 1.036 -3.495 -0.376 -2.300 ML 129 127 6 132 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 132 132 5 132 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 17 - A - - - ML 134 133 6 136 3 1 1 21 40 -8.202 -0.017 -6.856 1.805 -2.853 -2.437 -2.444 D 135 133 6 136 3 0 0 20 39 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 18 - U - - - ML 137 136 3 139 3 1 1 20 38 -8.202 -0.017 -6.856 -1.935 -1.854 -2.688 1.725 D 138 136 3 139 3 0 0 19 38 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 19 - A - - - ML 140 139 3 142 3 1 1 19 37 -8.202 -0.017 -6.856 1.608 -1.650 -1.805 -1.527 D 141 139 3 142 3 0 0 18 37 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 20 - G - - - ML 143 142 3 145 3 1 1 17 36 -8.202 -0.017 -6.856 -2.079 -3.370 1.815 -2.756 D 144 142 3 145 3 0 0 17 36 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 21 - U - - - ML 146 145 3 148 3 1 1 16 35 -8.202 -0.017 -6.856 -1.935 -1.854 -2.688 1.725 D 147 145 3 148 3 0 0 16 34 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 22 - U - - - ML 149 148 3 151 3 1 1 15 33 -8.202 -0.017 -6.856 -1.935 -1.854 -2.688 1.725 D 150 148 3 151 3 0 0 15 33 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 23 - C - - - ML 152 151 3 154 3 1 1 13 31 -8.202 -0.017 -6.856 -2.324 1.750 -3.155 -1.622 D 153 151 3 154 3 0 0 13 32 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 24 - A - - - ML 155 154 3 157 2 1 1 1 1 * 0.000 1.805 -2.853 -2.437 -2.444 D 156 154 3 157 2 0 0 0 0 * 0.000 IL 157 157 3 157 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 158 157 3 -1 0 0 0 0 0 [ BEGR 42 ] - - - - - - S 159 57 1 160 3 0 0 32 52 -8.202 -0.017 -6.856 IL 160 160 2 160 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - G - - - ML 161 160 2 163 3 1 1 32 52 -8.202 -0.017 -6.856 -1.267 -1.955 1.599 -1.748 D 162 160 2 163 3 0 0 31 51 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - - - ML 164 163 3 166 3 1 1 31 51 -8.202 -0.149 -3.404 1.805 -2.853 -2.437 -2.444 D 165 163 3 166 3 0 0 30 50 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - - - ML 167 166 3 169 3 1 1 30 50 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 168 166 3 169 3 0 0 29 48 -7.127 -2.640 -0.265 IL 169 169 3 169 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - G - - - ML 170 169 3 172 5 1 1 29 49 -7.188 -0.121 -3.990 -7.215 -8.107 -0.345 -2.010 1.374 -1.426 D 171 169 3 172 5 0 0 28 48 -5.570 -0.473 -4.831 -3.206 -3.118 IL 172 172 3 172 5 1 1 30 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 48 62 a u - - MP 173 172 3 177 6 2 2 28 48 -9.172 -9.111 -0.020 -7.888 -8.168 -8.563 -2.724 -2.393 -1.749 2.545 -2.876 -3.696 0.996 -3.101 -2.912 1.625 -3.431 -0.004 0.939 -2.967 -0.780 -1.917 ML 174 172 3 177 6 1 1 27 46 -6.703 -7.049 -1.221 -1.003 -6.899 -4.428 0.956 -0.823 -0.563 -0.290 MR 175 172 3 177 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 3 177 6 0 0 24 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 49 61 g c - - MP 179 178 6 183 6 2 2 26 46 -9.191 -9.130 -0.020 -7.907 -8.186 -8.582 -2.940 -2.299 -1.619 1.848 -3.323 -3.883 0.666 -3.366 -3.109 2.185 -3.593 1.579 0.425 -3.132 -1.125 -2.053 ML 180 178 6 183 6 1 1 25 44 -6.495 -6.841 -1.011 -1.250 -6.691 -4.220 0.208 -0.668 0.402 -0.162 MR 181 178 6 183 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 182 178 6 183 6 0 0 22 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 183 183 5 183 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 184 184 6 184 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 50 60 a u - - MP 185 184 6 189 6 2 2 24 44 -9.210 -9.149 -0.048 -5.431 -8.205 -8.600 -1.444 -0.705 -2.250 1.966 -2.285 -3.065 1.207 -2.586 -2.326 1.622 -2.857 -0.016 1.242 -2.361 -0.380 -1.440 ML 186 184 6 189 6 1 1 23 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 187 184 6 189 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 188 184 6 189 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 189 189 5 189 6 1 1 24 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 190 190 6 190 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 51 59 u a - - MP 191 190 6 195 6 2 2 22 42 -9.182 -9.121 -0.020 -7.898 -8.178 -8.573 -2.556 -2.544 -2.687 1.134 -2.325 -3.517 1.728 -2.787 -1.912 1.228 -3.253 -0.726 2.257 -2.830 0.040 -1.741 ML 192 190 6 195 6 1 1 22 41 -6.597 -6.943 -1.658 -0.724 -6.793 -4.323 0.866 -0.742 -0.473 -0.220 MR 193 190 6 195 6 1 1 21 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 194 190 6 195 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 195 195 5 195 6 1 1 22 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 196 196 6 196 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 52 58 c g - - MP 197 196 6 201 4 2 2 20 40 -7.135 -7.342 -0.137 -3.696 -0.817 -1.296 -1.757 1.328 -1.756 -1.927 1.400 -1.547 -1.775 1.342 -2.300 0.049 1.326 -0.961 -0.007 -0.738 ML 198 196 6 201 4 1 1 21 40 -4.024 -4.207 -0.408 -2.936 0.016 0.347 -0.677 0.126 MR 199 196 6 201 4 1 1 20 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 200 196 6 201 4 0 0 19 39 -4.568 -4.250 -2.265 -0.520 IL 201 201 5 201 4 1 1 22 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 202 202 6 202 3 1 1 21 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - u - - - ML 203 202 6 205 3 1 1 18 37 -8.124 -0.018 -6.778 -0.024 -0.615 -1.243 0.957 D 204 202 6 205 3 0 0 16 36 -6.828 -1.372 -0.726 IL 205 205 3 205 3 1 1 20 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - a - - - ML 206 205 3 208 3 1 1 17 36 -3.446 -0.153 -6.819 0.872 -0.883 -0.232 -0.365 D 207 205 3 208 3 0 0 14 33 -6.526 -2.039 -0.423 IL 208 208 3 208 3 1 1 18 38 -1.377 -0.799 -4.638 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - c - - - ML 209 208 3 211 2 1 1 1 1 * 0.000 -0.496 0.963 -1.575 0.008 D 210 208 3 211 2 0 0 0 0 * 0.000 IL 211 211 3 211 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 212 211 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD77 ACC RF00591 DESC Small nucleolar RNA SNORD77 LENG 68 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 16:00:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00591/CM NSEQ 21 EFFN 3.817017 CKSUM 107903124 STATS LOCAL MSV -8.3181 0.71903 STATS LOCAL VITERBI -8.8991 0.71903 STATS LOCAL FORWARD -3.7548 0.71903 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30615 1.72258 1.42828 1.16857 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 0.00000 * 1 0.21846 3.26981 2.18504 3.08441 1 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 2 2.96799 1.58307 2.76448 0.38531 2 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 3 0.16743 3.52546 2.38792 3.41418 3 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 4 3.36395 0.25118 3.18242 1.92394 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 5 1.71047 2.09667 2.30946 0.51577 5 U - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 6 0.76203 2.85848 0.90149 2.65976 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 7 2.13322 1.59299 1.99448 0.61222 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 8 2.03761 2.63458 0.33741 2.47345 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 9 0.23281 3.32646 2.06094 3.11364 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 10 2.80919 1.54225 2.61307 0.42689 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 11 1.77348 3.20471 0.31374 2.83058 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 12 1.83400 2.14519 0.52680 2.01976 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 13 3.49403 1.65488 3.35605 0.29621 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 14 3.71152 2.49126 3.54022 0.14648 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 15 2.97800 3.82208 0.10094 3.76198 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 16 2.67880 0.37225 2.50587 1.82905 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 17 0.08212 3.83651 3.50719 3.60126 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 18 3.18345 3.05406 3.71818 0.11978 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 19 0.20171 2.69700 2.93748 2.77642 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 20 3.28710 4.23257 0.07728 3.79446 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 21 3.18345 3.05406 3.71818 0.11978 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 22 3.18345 3.05406 3.71818 0.11978 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 23 3.55729 0.10086 4.10878 2.97608 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 24 0.08212 3.83651 3.50719 3.60126 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 25 1.88568 2.67561 0.42585 2.06993 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 26 3.93751 0.12113 3.67773 2.66925 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 27 0.16543 3.74428 2.32789 3.46367 27 A - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 28 2.44582 3.52484 0.16778 3.26099 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 29 0.08212 3.83651 3.50719 3.60126 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.06779 4.14216 3.00272 1.46634 0.26236 1.09861 0.40547 30 3.11709 2.99795 3.65030 0.12801 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.07769 2.84213 4.10782 0.49215 0.94498 1.63413 0.21706 31 1.86215 2.23970 2.00686 0.50457 32 U - - - 1.38629 1.38629 1.38629 1.38629 0.03344 4.10782 4.10782 1.46634 0.26236 0.49469 0.94099 32 1.96773 2.74646 0.42483 1.95058 33 G - - - 1.38629 1.38629 1.38629 1.38629 0.06572 4.14216 3.04248 1.46634 0.26236 1.09861 0.40547 33 0.51563 2.15249 2.17643 1.75312 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.11728 2.36181 4.10982 0.90995 0.51508 0.51040 0.91693 34 0.74641 2.78588 0.94235 2.59629 38 a - - > 1.38629 1.38629 1.38629 1.38629 0.06981 4.14216 2.96541 1.46634 0.26236 1.09861 0.40547 35 3.35257 2.15085 3.15058 0.21593 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.10624 3.00274 2.97318 0.56829 0.83585 1.65705 0.21159 36 2.73672 0.54819 2.20587 1.39810 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03473 4.07058 4.07058 1.46634 0.26236 0.81765 0.58244 37 0.91414 1.83221 1.21486 1.94963 42 a - - > 1.38629 1.38629 1.38629 1.38629 0.03343 4.10816 4.10816 1.46634 0.26236 1.63002 0.21806 38 2.91009 1.38780 2.67934 0.46634 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03343 4.10816 4.10816 1.46634 0.26236 0.49734 0.93687 39 2.58965 2.92684 0.19874 2.96383 44 G - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 40 0.08212 3.83651 3.50719 3.60126 45 A - - , 1.38629 1.38629 1.38629 1.38629 0.13639 4.14216 2.19273 1.46634 0.26236 1.09861 0.40547 41 0.10152 3.63466 3.32192 3.37963 46 A - - , 1.38629 1.38629 1.38629 1.38629 0.03577 4.04154 4.04154 1.46634 0.26236 2.19996 0.11744 42 1.73355 3.07327 0.34371 2.68911 47 G - - , 1.38629 1.38629 1.38629 1.38629 0.03577 4.04154 4.04154 1.46634 0.26236 0.25053 1.50682 43 0.75569 2.08505 1.42893 1.79307 48 a - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 44 1.25281 2.39298 0.66643 2.21270 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 45 1.03588 1.80513 1.37814 1.47584 50 a - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 46 1.72250 1.52427 1.64872 0.88842 51 u - - < 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 47 1.42489 1.50939 1.38012 1.24872 52 u - - < 1.38629 1.38629 1.38629 1.38629 0.09484 4.14216 2.59572 1.46634 0.26236 1.09861 0.40547 48 1.42928 1.88455 2.38199 0.66116 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03434 4.08166 4.08166 1.46634 0.26236 0.83086 0.57212 49 0.73246 2.06320 1.54555 1.72019 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.14089 2.16226 4.11350 0.68169 0.70473 1.56402 0.23483 50 1.85227 0.61732 2.70136 1.44131 57 C - - _ 1.38629 1.38629 1.38629 1.38629 0.08467 4.11350 2.73596 1.46634 0.26236 0.54229 0.87088 51 1.47575 1.42728 1.39895 1.25675 58 u - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09390 4.09390 1.46634 0.26236 1.78593 0.18349 52 0.99509 1.84534 1.29338 1.61951 59 a - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09390 4.09390 1.46634 0.26236 0.40839 1.09279 53 1.61113 1.44932 1.60319 1.00963 60 u - - > 1.38629 1.38629 1.38629 1.38629 0.06589 4.14216 3.03904 1.46634 0.26236 1.09861 0.40547 54 2.46248 1.22390 2.05922 0.70696 61 u - - > 1.38629 1.38629 1.38629 1.38629 0.06797 4.10965 3.00996 1.46634 0.26236 1.61215 0.22247 55 1.98071 1.65159 1.80285 0.68230 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03453 4.07621 4.07621 1.46634 0.26236 0.33552 1.25516 56 1.40541 2.67931 0.56427 2.14261 63 G - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 57 3.18345 3.05406 3.71818 0.11978 64 U - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 58 3.55729 0.10086 4.10878 2.97608 65 C - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 59 3.18345 3.05406 3.71818 0.11978 66 U - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 60 3.28710 4.23257 0.07728 3.79446 67 G - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 61 0.16651 3.32130 2.64254 3.07696 68 A - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 62 3.18345 3.05406 3.71818 0.11978 69 U - - , 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 63 2.43953 3.34448 0.18154 3.13429 70 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03229 4.14216 4.14216 1.46634 0.26236 1.09861 0.40547 64 3.64649 2.75319 3.34504 0.13361 71 U - - ) 1.38629 1.38629 1.38629 1.38629 0.06348 4.14216 3.08739 1.46634 0.26236 1.09861 0.40547 65 0.47329 2.93515 1.34659 2.75199 72 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03330 4.11198 4.11198 1.46634 0.26236 1.58336 0.22977 66 3.34876 2.56122 2.85873 0.18594 73 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03330 4.11198 4.11198 1.46634 0.26236 1.58336 0.22977 67 3.04283 0.19738 3.62993 2.25474 74 C - - : 1.38629 1.38629 1.38629 1.38629 0.03330 4.11198 4.11198 1.46634 0.26236 0.52859 0.89022 68 2.49077 2.53149 2.67942 0.26265 75 U - - : 1.38629 1.38629 1.38629 1.38629 0.01628 4.12615 * 1.46634 0.26236 0.00000 * //