INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD41 ACC RF00588 DESC Small nucleolar RNA SNORD41 STATES 214 NODES 68 CLEN 70 W 88 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 02:49:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00588/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 3.266602 CKSUM 2658415740 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.00 NC 40.90 EFP7GF -11.2446 0.71877 ECMLC 0.62639 -6.70329 2.75581 1600000 449189 0.002671 ECMGC 0.41421 -18.16973 -4.92072 1600000 96691 0.004137 ECMLI 0.59679 -4.72265 4.47327 1600000 290131 0.004136 ECMGI 0.43715 -13.12388 -1.38410 1600000 67743 0.005905 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 88 110 -7.412 -7.619 -0.038 -6.034 IL 1 1 2 1 4 1 30 92 114 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 91 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 30 89 110 -8.766 -0.014 -7.083 -0.356 -0.094 -1.168 0.877 D 4 2 3 5 3 0 24 87 109 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 28 89 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 80 - G - - MR 6 5 3 8 5 1 29 88 109 -7.481 -0.030 -7.296 -7.508 -8.400 -0.225 -2.264 1.395 -1.708 D 7 5 3 8 5 0 22 86 108 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 26 88 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 79 g c - - MP 9 8 3 13 6 2 29 87 108 -9.303 -9.242 -0.018 -8.018 -8.298 -8.693 -3.043 -2.360 -3.073 1.095 -3.302 -3.782 1.049 -3.457 -3.256 2.650 -3.676 0.826 0.575 -3.077 -0.465 -0.912 ML 10 8 3 13 6 1 24 85 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 23 85 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 19 82 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 25 86 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 26 86 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 78 G C - - MP 15 14 6 19 6 2 28 85 106 -9.303 -9.242 -0.018 -8.018 -8.298 -8.693 -4.189 -2.912 -4.102 0.608 -4.427 -4.499 0.189 -4.457 -4.179 3.394 -4.493 -0.598 -0.224 -3.966 -0.647 -3.036 ML 16 14 6 19 6 1 23 83 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 22 83 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 18 81 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 25 84 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 25 84 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 77 G C - - MP 21 20 6 25 6 2 26 83 104 -9.303 -9.242 -0.018 -8.018 -8.298 -8.693 -5.585 -3.506 -5.817 -0.392 -6.405 -5.007 -1.560 -6.081 -4.835 3.788 -5.121 -1.251 -1.927 -5.008 -3.651 -4.681 ML 22 20 6 25 6 1 22 82 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 21 81 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 18 79 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 23 82 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 23 82 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 76 A U - - MP 27 26 6 31 4 2 24 80 102 -7.412 -7.619 -0.038 -6.034 -4.629 -3.477 -4.550 3.686 -5.359 -6.532 -1.001 -4.533 -4.450 0.167 -5.036 -0.842 -1.411 -5.551 -2.937 -3.364 ML 28 26 6 31 4 1 21 80 102 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 19 80 102 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 18 79 101 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 23 82 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 22 81 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 33 32 6 35 3 1 23 78 100 -8.400 -0.015 -7.054 1.290 -1.428 -1.076 -0.495 D 34 32 6 35 3 0 17 77 98 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 22 80 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - G - - - ML 36 35 3 38 3 1 22 77 99 -8.400 -0.015 -7.054 -0.588 -2.494 1.534 -1.940 D 37 35 3 38 3 0 16 76 97 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 21 79 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 39 38 3 41 3 1 21 76 98 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 40 38 3 41 3 0 16 75 96 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 42 41 3 44 3 1 20 75 97 -8.400 -0.015 -7.054 -2.471 -3.808 1.863 -3.187 D 43 41 3 44 3 0 15 74 95 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 45 44 3 47 3 1 19 74 96 -8.400 -0.015 -7.054 1.854 -3.250 -2.798 -2.883 D 46 44 3 47 3 0 14 73 94 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 18 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 48 47 3 50 3 1 18 73 95 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 49 47 3 50 3 0 13 72 93 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 51 50 3 53 3 1 17 72 94 -8.400 -0.015 -7.054 -2.471 -3.808 1.863 -3.187 D 52 50 3 53 3 0 13 71 92 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 54 53 3 56 3 1 17 71 93 -8.400 -0.015 -7.054 1.442 -1.730 -1.011 -1.043 D 55 53 3 56 3 0 12 70 91 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - c - - - ML 57 56 3 59 3 1 16 70 92 -8.400 -0.015 -7.054 -0.403 0.654 -1.212 0.309 D 58 56 3 59 3 0 11 69 90 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 15 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 60 59 3 62 3 1 15 69 91 -8.400 -0.105 -3.901 1.330 -1.115 -0.897 -1.035 D 61 59 3 62 3 0 11 68 89 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 15 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - c - - - ML 63 62 3 65 3 1 15 68 90 -8.312 -0.016 -6.966 -0.194 0.767 -1.047 -0.089 D 64 62 3 65 3 0 10 67 88 -6.976 -0.726 -1.367 IL 65 65 3 65 3 1 14 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - c - - - ML 66 65 3 68 3 1 14 67 89 -3.722 -0.125 -7.054 -0.239 0.486 -1.136 0.375 D 67 65 3 68 3 0 8 65 86 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 69 90 -1.258 -0.880 -4.707 0.000 0.000 0.000 0.000 [ MATL 19 ] 22 - u - - - ML 69 68 3 71 3 1 13 65 85 -8.400 -0.015 -7.054 -1.097 0.398 -1.903 0.962 D 70 68 3 71 3 0 8 63 83 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 23 - g - - - ML 72 71 3 74 3 1 12 64 84 -8.400 -0.015 -7.054 0.130 -0.872 0.337 0.133 D 73 71 3 74 3 0 7 62 82 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 24 - U - - - ML 75 74 3 77 3 1 11 63 83 -8.400 -0.015 -7.054 -1.189 -1.094 -1.544 1.459 D 76 74 3 77 3 0 6 61 81 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 25 - G - - - ML 78 77 3 80 3 1 11 62 82 -8.400 -0.015 -7.054 -0.391 -1.920 1.333 -1.136 D 79 77 3 80 3 0 6 60 80 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 10 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - A - - - ML 81 80 3 83 3 1 10 61 81 -8.400 -0.015 -7.054 1.589 -1.413 -1.884 -1.537 D 82 80 3 83 3 0 5 59 79 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 9 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - C - - - ML 84 83 3 86 3 1 9 60 80 -8.400 -0.084 -4.218 -0.943 1.121 -1.024 -0.298 D 85 83 3 86 3 0 5 58 78 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 9 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - u - - - ML 87 86 3 89 3 1 8 59 78 -8.332 -0.016 -6.986 -0.537 0.278 -0.709 0.572 D 88 86 3 89 3 0 4 57 77 -6.832 -0.828 -1.224 IL 89 89 3 89 3 1 8 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - g - - - ML 90 89 3 92 3 1 7 58 77 -8.400 -0.015 -7.054 -0.245 0.008 0.242 -0.047 D 91 89 3 92 3 0 3 56 76 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 7 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 30 - u - - - ML 93 92 3 95 3 1 7 57 76 -8.400 -0.015 -7.054 -1.094 0.661 -1.919 0.753 D 94 92 3 95 3 0 2 55 75 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 58 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 31 - U - - - ML 96 95 3 98 3 1 6 56 75 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 97 95 3 98 3 0 1 54 74 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 5 57 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - G - - - ML 99 98 3 101 3 1 5 55 74 -8.400 -0.063 -4.654 -2.471 -3.808 1.863 -3.187 D 100 98 3 101 3 0 1 53 73 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 5 56 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - A - - - ML 102 101 3 104 3 1 4 54 73 -4.614 -0.072 -7.007 1.844 -3.157 -2.713 -2.780 D 103 101 3 104 3 0 0 52 72 -6.662 -0.976 -1.054 IL 104 104 3 104 3 1 4 55 74 -1.599 -0.692 -4.299 0.000 0.000 0.000 0.000 [ MATL 31 ] 35 - c - - - ML 105 104 3 107 3 1 3 52 72 -8.400 -0.015 -7.054 -1.141 0.880 -1.985 0.540 D 106 104 3 107 3 0 0 51 71 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 3 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - a - - - ML 108 107 3 110 3 1 2 51 71 -8.400 -0.119 -3.717 0.717 -1.069 0.377 -0.782 D 109 107 3 110 3 0 0 50 70 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - U - - - ML 111 110 3 113 3 1 1 50 70 -8.298 -0.110 -3.830 -0.444 -0.781 -1.213 1.171 D 112 110 3 113 3 0 0 49 69 -7.067 -0.670 -1.459 IL 113 113 3 113 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 38 - c - - - ML 114 113 3 116 3 1 3 49 69 -8.314 -0.016 -6.968 -0.505 0.384 0.225 -0.284 D 115 113 3 116 3 0 0 48 68 -6.961 -0.736 -1.353 IL 116 116 3 116 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - a - - - ML 117 116 3 119 3 1 2 48 68 -8.400 -0.015 -7.054 0.498 -0.916 0.174 -0.104 D 118 116 3 119 3 0 0 47 66 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - c - - - ML 120 119 3 122 3 1 2 47 67 -8.400 -0.015 -7.054 -0.275 0.964 -1.652 -0.145 D 121 119 3 122 3 0 0 46 65 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - a - - - ML 123 122 3 125 3 1 2 46 66 -8.400 -0.015 -7.054 0.706 -0.776 -0.100 -0.232 D 124 122 3 125 3 0 0 45 64 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - C - - - ML 126 125 3 128 3 1 1 45 65 -8.400 -0.015 -7.054 -0.831 1.442 -2.281 -0.956 D 127 125 3 128 3 0 0 44 63 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - U - - - ML 129 128 3 131 3 1 1 44 63 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 130 128 3 131 3 0 0 43 62 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - G - - - ML 132 131 3 134 3 1 1 43 62 -8.400 -0.015 -7.054 -2.471 -3.808 1.863 -3.187 D 133 131 3 134 3 0 0 42 61 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - A - - - ML 135 134 3 137 3 1 1 42 61 -8.400 -0.015 -7.054 1.854 -3.250 -2.798 -2.883 D 136 134 3 137 3 0 0 41 60 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - U - - - ML 138 137 3 140 3 1 1 41 60 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 139 137 3 140 3 0 0 40 59 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - U - - - ML 141 140 3 143 3 1 1 40 59 -8.400 -0.015 -7.054 -0.761 -0.384 -0.993 1.098 D 142 140 3 143 3 0 0 38 58 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - U - - - ML 144 143 3 146 3 1 1 39 58 -8.400 -0.015 -7.054 -0.798 -0.863 -1.429 1.324 D 145 143 3 146 3 0 0 37 57 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - C - - - ML 147 146 3 149 3 1 1 38 57 -8.400 -0.015 -7.054 -0.882 1.116 -1.909 0.033 D 148 146 3 149 3 0 0 36 56 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - U - - - ML 150 149 3 152 3 1 1 37 56 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 151 149 3 152 3 0 0 35 55 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - c - - - ML 153 152 3 155 3 1 1 36 55 -8.400 -0.015 -7.054 -0.377 0.509 -0.029 -0.275 D 154 152 3 155 3 0 0 34 54 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - u - - - ML 156 155 3 158 3 1 1 35 54 -8.400 -0.055 -4.873 0.016 -0.701 -0.502 0.738 D 157 155 3 158 3 0 0 34 53 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - c - - - ML 159 158 3 161 3 1 1 34 53 -3.142 -0.186 -7.015 -0.233 0.604 -1.155 0.239 D 160 158 3 161 3 0 0 33 52 -1.943 -2.101 -0.980 IL 161 161 3 161 3 1 1 35 54 -1.465 -0.729 -4.865 0.000 0.000 0.000 0.000 [ MATL 50 ] 58 - G - - - ML 162 161 3 164 3 1 1 31 50 -8.400 -0.015 -7.054 -1.501 -3.136 1.750 -2.566 D 163 161 3 164 3 0 0 30 49 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 59 - U - - - ML 165 164 3 167 3 1 1 30 49 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 166 164 3 167 3 0 0 29 48 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 60 - A - - - ML 168 167 3 170 3 1 1 29 48 -8.400 -0.015 -7.054 1.854 -3.250 -2.798 -2.883 D 169 167 3 170 3 0 0 28 47 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 61 - U - - - ML 171 170 3 173 3 1 1 28 47 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 172 170 3 173 3 0 0 27 46 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 62 - U - - - ML 174 173 3 176 3 1 1 27 46 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 175 173 3 176 3 0 0 26 45 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 63 - C - - - ML 177 176 3 179 3 1 1 26 44 -8.400 -0.015 -7.054 -1.357 1.415 -1.659 -0.676 D 178 176 3 179 3 0 0 25 44 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 64 - G - - - ML 180 179 3 182 3 1 1 25 43 -8.400 -0.015 -7.054 -1.071 -2.827 1.667 -2.269 D 181 179 3 182 3 0 0 24 43 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 65 - U - - - ML 183 182 3 185 3 1 1 24 42 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 184 182 3 185 3 0 0 23 41 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 66 - A - - - ML 186 185 3 188 3 1 1 22 41 -8.400 -0.015 -7.054 1.854 -3.250 -2.798 -2.883 D 187 185 3 188 3 0 0 22 40 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 67 - C - - - ML 189 188 3 191 3 1 1 21 40 -8.400 -0.015 -7.054 -2.800 1.819 -3.618 -2.013 D 190 188 3 191 3 0 0 20 39 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 68 - U - - - ML 192 191 3 194 3 1 1 20 39 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 193 191 3 194 3 0 0 19 38 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - G - - - ML 195 194 3 197 3 1 1 19 37 -5.053 -0.055 -7.054 -2.471 -3.808 1.863 -3.187 D 196 194 3 197 3 0 0 18 36 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 39 -1.560 -0.716 -4.260 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - G - - - ML 198 197 3 200 3 1 1 17 36 -8.400 -0.015 -7.054 -0.703 -1.752 1.290 -0.635 D 199 197 3 200 3 0 0 17 35 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 72 - C - - - ML 201 200 3 203 3 1 1 16 34 -8.400 -0.015 -7.054 -2.800 1.819 -3.618 -2.013 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 73 - U - - - ML 204 203 3 206 3 1 1 14 33 -8.400 -0.015 -7.054 -2.316 -2.172 -3.080 1.790 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 74 - G - - - ML 207 206 3 209 3 1 1 13 31 -8.400 -0.015 -7.054 -2.471 -3.808 1.863 -3.187 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 75 - A - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 1.854 -3.250 -2.798 -2.883 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 67 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD41 ACC RF00588 DESC Small nucleolar RNA SNORD41 LENG 70 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 02:49:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00588/CM NSEQ 20 EFFN 3.588867 CKSUM 2658415740 STATS LOCAL MSV -8.5435 0.71877 STATS LOCAL VITERBI -9.1017 0.71877 STATS LOCAL FORWARD -3.5257 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.45143 1.58558 1.39538 1.16092 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 0.00000 * 1 1.64980 1.44652 2.21784 0.76856 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 2 1.83919 1.95353 0.64789 1.73652 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 3 2.23599 2.59558 0.33283 2.28649 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 4 2.92910 3.75383 0.10728 3.69469 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 5 0.18193 3.43887 2.31517 3.33861 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 6 0.47509 2.41903 2.15981 1.74977 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 7 1.82186 3.19441 0.30454 2.81640 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 8 3.10676 2.98924 3.63973 0.12935 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 9 3.21293 4.15106 0.08371 3.71651 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 10 0.08917 3.75787 3.43478 3.51513 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 11 3.10676 2.98924 3.63973 0.12935 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 12 3.21293 4.15106 0.08371 3.71651 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 13 0.36973 2.63763 2.10988 2.15164 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 14 1.68840 0.91199 2.25328 1.17633 14 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 15 0.44598 2.18022 2.02980 2.15915 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09710 4.22160 2.55284 1.46634 0.26236 1.09861 0.40547 16 1.53605 0.83241 2.13331 1.46393 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03183 4.15633 4.15633 1.46634 0.26236 0.31988 1.29550 17 1.56680 1.03064 2.19677 1.12903 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.11293 2.38479 4.22160 0.84331 0.56261 1.09861 0.40547 18 2.20754 1.09512 2.77091 0.70740 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 19 1.30133 2.00958 1.13822 1.29683 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 20 2.27803 2.18726 2.49773 0.35237 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 21 1.68149 2.77287 0.44219 2.21833 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 22 0.26668 2.39337 2.76437 2.52895 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 23 2.09730 0.58178 2.11477 1.62127 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.08176 4.22160 2.75152 1.46634 0.26236 1.09861 0.40547 24 1.78868 1.17852 1.88337 0.98615 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03135 4.17120 4.17120 1.46634 0.26236 0.37831 1.15524 25 1.57607 1.37006 1.20276 1.43231 29 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 26 2.20454 0.90794 2.78342 0.85680 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 27 3.10676 2.98924 3.63973 0.12935 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 28 3.21293 4.15106 0.08371 3.71651 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06571 4.22160 3.01761 1.46634 0.26236 1.09861 0.40547 29 0.09555 3.69209 3.37445 3.44287 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07327 2.89218 4.18676 0.47964 0.96498 0.47000 0.98084 30 2.23926 0.75392 2.83195 1.01047 35 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 31 0.88078 2.14952 1.10928 1.97183 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.10779 4.22160 2.43597 1.46634 0.26236 1.09861 0.40547 32 1.71664 1.95273 2.25375 0.55610 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.10331 4.14598 2.49708 1.46634 0.26236 0.28922 1.38170 33 1.77282 1.10050 1.21266 1.60925 38 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03178 4.15797 4.15797 1.46634 0.26236 0.32536 1.28111 34 1.03773 2.03919 1.25521 1.46710 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 35 1.59449 0.69360 2.58504 1.50588 40 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 36 0.88850 1.93523 1.45129 1.56032 41 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 37 2.00560 0.35920 3.06026 2.11770 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 38 3.10676 2.98924 3.63973 0.12935 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 39 3.21293 4.15106 0.08371 3.71651 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 40 0.08917 3.75787 3.43478 3.51513 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 41 3.10676 2.98924 3.63973 0.12935 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 42 1.95553 1.65868 2.08996 0.60802 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 43 1.98067 2.01361 2.41305 0.44789 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 44 2.04101 0.58876 2.77260 1.37600 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 45 3.10676 2.98924 3.63973 0.12935 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 46 1.67448 1.01351 1.39448 1.60103 51 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 47 1.37875 1.88848 1.73433 0.86682 52 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 48 1.56353 0.94703 2.21232 1.22668 53 c - - _ 1.38629 1.38629 1.38629 1.38629 0.15487 2.04951 4.22160 0.62665 0.76438 1.09861 0.40547 49 2.48735 3.65771 0.15909 3.26605 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 50 3.10676 2.98924 3.63973 0.12935 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 51 0.08917 3.75787 3.43478 3.51513 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 52 3.10676 2.98924 3.63973 0.12935 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 53 3.10676 2.98924 3.63973 0.12935 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 54 2.40769 0.37788 2.58011 1.90448 63 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 55 2.17279 3.43366 0.21494 3.05170 64 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 56 3.10676 2.98924 3.63973 0.12935 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 57 0.08917 3.75787 3.43478 3.51513 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 58 3.46653 0.11002 4.02490 2.89871 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 59 3.10676 2.98924 3.63973 0.12935 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 60 3.21293 4.15106 0.08371 3.71651 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05999 3.13378 4.22160 0.57598 0.82588 1.09861 0.40547 61 1.91388 2.65647 0.46958 1.85132 71 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 62 3.46654 0.11002 4.02490 2.89871 72 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 63 3.10676 2.98924 3.63973 0.12935 73 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 64 3.21293 4.15106 0.08371 3.71651 74 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 65 0.08917 3.75787 3.43478 3.51513 75 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 66 3.55899 2.66941 3.24608 0.14698 76 U - - > 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 67 3.87544 0.12879 3.60440 2.61876 77 C - - > 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 68 2.80850 0.37645 2.18419 1.96012 78 C - - > 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 69 2.20711 0.86255 1.70058 1.25415 79 c - - > 1.38629 1.38629 1.38629 1.38629 0.02979 4.22160 4.22160 1.46634 0.26236 1.09861 0.40547 70 1.55846 3.02997 0.39958 2.65040 80 G - - : 1.38629 1.38629 1.38629 1.38629 0.01501 4.20682 * 1.46634 0.26236 0.00000 * //