INFERNAL1/a [1.1.5 | Sep 2023] NAME snoMe28S-Cm788 ACC RF00539 DESC Small nucleolar RNA Me28S-Cm788 STATES 226 NODES 73 CLEN 74 W 91 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 17:56:54 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00539/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 1.723633 CKSUM 493496906 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 46.00 NC 42.30 EFP7GF -7.8219 0.71863 ECMLC 0.51707 -6.66599 3.95771 1600000 291627 0.004115 ECMGC 0.38844 -11.66414 2.59162 1600000 101624 0.003936 ECMLI 0.47442 -4.71605 6.31181 1600000 224559 0.005344 ECMGI 0.39062 -7.02133 6.46972 1600000 77759 0.005144 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 91 112 -9.075 -9.014 -0.022 -7.791 -8.071 -8.466 IL 1 1 2 1 6 1 29 93 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 29 93 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 75 a u - - MP 3 2 3 7 6 2 30 91 112 -9.075 -9.014 -0.022 -7.791 -8.071 -8.466 -2.979 -2.480 -3.065 2.764 -3.143 -4.058 0.850 -3.257 -3.087 1.419 -3.615 -0.276 0.529 -3.318 -0.982 -0.069 ML 4 2 3 7 6 1 26 90 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 26 90 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 22 88 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 28 91 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 28 91 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 74 c g - - MP 9 8 6 13 6 2 28 89 110 -9.075 -9.014 -0.022 -7.791 -8.071 -8.466 -3.367 -3.338 -3.310 0.304 -2.389 -3.934 2.492 -3.060 -3.327 0.533 -3.750 -1.400 1.768 -3.542 1.466 -2.240 ML 10 8 6 13 6 1 25 88 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 24 88 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 22 86 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 26 89 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 26 89 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 73 a u - - MP 15 14 6 19 4 2 26 87 108 -6.861 -7.068 -0.057 -5.482 -3.112 -2.601 -3.158 2.431 -2.914 -4.031 1.319 -3.224 -3.171 1.507 -3.661 -0.375 1.402 -3.373 -0.634 -2.106 ML 16 14 6 19 4 1 24 87 108 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 23 87 108 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 21 86 107 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 25 89 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 25 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 21 20 6 23 3 1 24 85 106 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 22 20 6 23 3 0 21 84 104 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 24 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 24 23 3 26 3 1 23 84 105 -3.259 -0.510 -2.372 0.397 -0.772 -0.328 0.380 D 25 23 3 26 3 0 20 82 103 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 24 85 105 -1.729 -0.617 -4.429 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - a - - - ML 27 26 3 29 3 1 24 83 103 -7.593 -0.027 -6.247 0.771 -0.779 -0.866 0.216 D 28 26 3 29 3 0 19 81 102 -7.550 -1.208 -0.832 IL 29 29 3 29 3 1 23 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - C - - - ML 30 29 3 32 3 1 23 82 102 -7.749 -0.024 -6.403 -1.234 1.453 -2.034 -0.753 D 31 29 3 32 3 0 18 80 100 -7.008 -2.521 -0.290 IL 32 32 3 32 3 1 23 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - u - - - ML 33 32 3 35 3 1 22 81 101 -7.749 -0.024 -6.403 0.487 -0.744 -0.947 0.568 D 34 32 3 35 3 0 18 79 99 -7.008 -2.521 -0.290 IL 35 35 3 35 3 1 22 82 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - - - ML 36 35 3 38 3 1 21 80 100 -7.749 -0.024 -6.403 1.607 -1.942 -1.617 -1.446 D 37 35 3 38 3 0 18 78 98 -7.008 -2.521 -0.290 IL 38 38 3 38 3 1 21 81 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - U - - - ML 39 38 3 41 3 1 20 79 99 -7.749 -0.024 -6.403 -1.099 -1.166 -1.809 1.487 D 40 38 3 41 3 0 17 77 98 -7.008 -0.706 -1.400 IL 41 41 3 41 3 1 20 80 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - G - - - ML 42 41 3 44 3 1 20 78 98 -7.884 -0.022 -6.538 -1.408 -2.601 1.681 -1.987 D 43 41 3 44 3 0 16 76 97 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - A - - - ML 45 44 3 47 3 1 19 77 97 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 46 44 3 47 3 0 15 75 96 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 18 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - U - - - ML 48 47 3 50 3 1 18 76 96 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 49 47 3 50 3 0 14 74 94 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - G - - - ML 51 50 3 53 3 1 17 75 95 -7.884 -0.022 -6.538 -1.408 -2.601 1.681 -1.987 D 52 50 3 53 3 0 14 73 93 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - U - - - ML 54 53 3 56 3 1 16 74 94 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 55 53 3 56 3 0 13 72 92 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 57 56 3 59 3 1 15 72 93 -7.884 -0.181 -3.140 -1.338 -1.361 -2.064 1.573 D 58 56 3 59 3 0 12 71 91 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 15 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - A - - - ML 60 59 3 62 3 1 14 71 92 -7.728 -0.189 -3.081 1.594 -1.902 -1.581 -1.401 D 61 59 3 62 3 0 12 70 91 -7.098 -0.651 -1.490 IL 62 62 3 62 3 1 15 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - U - - - ML 63 62 3 65 3 1 15 71 91 -7.739 -0.024 -6.393 -1.083 -1.153 -1.792 1.480 D 64 62 3 65 3 0 10 69 89 -7.049 -0.680 -1.440 IL 65 65 3 65 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - U - - - ML 66 65 3 68 3 1 14 69 90 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 67 65 3 68 3 0 8 68 88 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - U - - - ML 69 68 3 71 3 1 13 68 89 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 70 68 3 71 3 0 7 67 87 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - U - - - ML 72 71 3 74 3 1 12 67 88 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 73 71 3 74 3 0 7 66 86 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - A - - - ML 75 74 3 77 3 1 12 66 86 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 76 74 3 77 3 0 6 65 85 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 11 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - C - - - ML 78 77 3 80 3 1 11 65 85 -7.884 -0.022 -6.538 -1.547 1.568 -2.364 -1.001 D 79 77 3 80 3 0 5 64 84 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 10 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 81 80 3 83 3 1 10 64 84 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 82 80 3 83 3 0 5 63 83 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 84 83 3 86 3 1 10 63 83 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 85 83 3 86 3 0 4 62 82 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - A - - - ML 87 86 3 89 3 1 9 62 82 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 88 86 3 89 3 0 3 61 81 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 90 89 3 92 3 1 8 61 81 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 91 89 3 92 3 0 2 60 80 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - G - - - ML 93 92 3 95 3 1 8 60 80 -7.884 -0.022 -6.538 -1.408 -2.601 1.681 -1.987 D 94 92 3 95 3 0 2 59 79 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - U - - - ML 96 95 3 98 3 1 7 59 79 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 97 95 3 98 3 0 1 58 78 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - U - - - ML 99 98 3 101 3 1 6 58 78 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 100 98 3 101 3 0 0 57 77 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 102 101 3 104 3 1 6 57 77 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 103 101 3 104 3 0 0 55 75 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 4 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 105 104 3 107 3 1 5 56 76 -7.884 -0.022 -6.538 -1.408 -2.601 1.681 -1.987 D 106 104 3 107 3 0 0 54 74 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 108 107 3 110 3 1 5 55 75 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 109 107 3 110 3 0 0 53 73 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - C - - - ML 111 110 3 113 3 1 4 54 74 -7.884 -0.022 -6.538 -1.547 1.568 -2.364 -1.001 D 112 110 3 113 3 0 0 52 72 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 3 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 114 113 3 116 3 1 4 53 72 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 115 113 3 116 3 0 0 51 71 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 2 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - A - - - ML 117 116 3 119 3 1 3 52 71 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 118 116 3 119 3 0 0 50 70 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - A - - - ML 120 119 3 122 3 1 3 51 70 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 121 119 3 122 3 0 0 49 69 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - U - - - ML 123 122 3 125 3 1 2 50 69 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 124 122 3 125 3 0 0 48 68 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - G - - - ML 126 125 3 128 3 1 2 48 68 -7.884 -0.022 -6.538 -1.408 -2.601 1.681 -1.987 D 127 125 3 128 3 0 0 47 67 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - - - ML 129 128 3 131 3 1 2 47 67 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 130 128 3 131 3 0 0 46 66 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - - - ML 132 131 3 134 3 1 1 46 66 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 133 131 3 134 3 0 0 45 65 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - A - - - ML 135 134 3 137 3 1 1 45 65 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 136 134 3 137 3 0 0 44 64 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - U - - - ML 138 137 3 140 3 1 1 44 64 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 139 137 3 140 3 0 0 43 63 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - G - - - ML 141 140 3 143 3 1 1 43 63 -7.884 -0.022 -6.538 -0.023 -1.626 1.138 -1.028 D 142 140 3 143 3 0 0 42 61 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - - - ML 144 143 3 146 3 1 1 42 62 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 145 143 3 146 3 0 0 41 60 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - U - - - ML 147 146 3 149 3 1 1 41 61 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 148 146 3 149 3 0 0 40 59 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 150 149 3 152 3 1 1 40 59 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 151 149 3 152 3 0 0 39 58 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - U - - - ML 153 152 3 155 3 1 1 39 58 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 154 152 3 155 3 0 0 38 57 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - G - - - ML 156 155 3 158 3 1 1 38 57 -7.884 -0.022 -6.538 -1.408 -2.601 1.681 -1.987 D 157 155 3 158 3 0 0 37 56 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - A - - - ML 159 158 3 161 3 1 1 37 56 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 160 158 3 161 3 0 0 35 55 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - U - - - ML 162 161 3 164 3 1 1 36 55 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 163 161 3 164 3 0 0 34 54 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - U - - - ML 165 164 3 167 3 1 1 35 54 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 166 164 3 167 3 0 0 33 53 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - G - - - ML 168 167 3 170 3 1 1 34 53 -7.884 -0.022 -6.538 -1.408 -2.601 1.681 -1.987 D 169 167 3 170 3 0 0 32 52 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - U - - - ML 171 170 3 173 3 1 1 32 52 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 172 170 3 173 3 0 0 31 51 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - A - - - ML 174 173 3 176 3 1 1 31 50 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 175 173 3 176 3 0 0 30 49 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - A - - - ML 177 176 3 179 3 1 1 30 49 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 178 176 3 179 3 0 0 29 48 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - A - - - ML 180 179 3 182 3 1 1 29 48 -7.884 -0.022 -6.538 1.123 -1.098 -1.127 -0.156 D 181 179 3 182 3 0 0 28 47 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - U - - - ML 183 182 3 185 3 1 1 28 47 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 184 182 3 185 3 0 0 27 46 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - U - - - ML 186 185 3 188 3 1 1 27 46 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 187 185 3 188 3 0 0 26 45 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - A - - - ML 189 188 3 191 3 1 1 26 45 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 190 188 3 191 3 0 0 25 44 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - g - - - ML 192 191 3 194 3 1 1 25 44 -7.884 -0.022 -6.538 -0.424 -0.661 0.977 -0.612 D 193 191 3 194 3 0 0 24 43 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 63 - U - - - ML 195 194 3 197 3 1 1 24 42 -7.884 -0.022 -6.538 -0.477 -0.847 -0.528 1.023 D 196 194 3 197 3 0 0 23 42 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 64 - A - - - ML 198 197 3 200 3 1 1 22 41 -7.884 -0.022 -6.538 1.111 -1.088 -1.121 -0.138 D 199 197 3 200 3 0 0 21 40 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 65 - A - - - ML 201 200 3 203 3 1 1 21 40 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 202 200 3 203 3 0 0 20 39 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 66 - C - - - ML 204 203 3 206 3 1 1 20 39 -7.884 -0.022 -6.538 -1.547 1.568 -2.364 -1.001 D 205 203 3 206 3 0 0 19 38 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 67 - U - - - ML 207 206 3 209 3 1 1 19 38 -7.884 -0.022 -6.538 -1.338 -1.361 -2.064 1.573 D 208 206 3 209 3 0 0 18 37 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 68 - G - - - ML 210 209 3 212 3 1 1 18 36 -7.884 -0.022 -6.538 -1.408 -2.601 1.681 -1.987 D 211 209 3 212 3 0 0 17 36 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 69 - A - - - ML 213 212 3 215 3 1 1 16 35 -7.884 -0.022 -6.538 1.682 -2.210 -1.858 -1.737 D 214 212 3 215 3 0 0 16 34 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 70 - G - - - ML 216 215 3 218 3 1 1 15 33 -7.884 -0.022 -6.538 -1.408 -2.601 1.681 -1.987 D 217 215 3 218 3 0 0 15 33 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 71 - a - - - ML 219 218 3 221 3 1 1 13 32 -7.884 -0.022 -6.538 0.661 -0.315 -0.953 0.136 D 220 218 3 221 3 0 0 13 32 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 72 - a - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 0.691 -0.844 -1.005 0.412 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 72 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoMe28S-Cm788 ACC RF00539 DESC Small nucleolar RNA Me28S-Cm788 LENG 74 MAXL 162 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 17:56:54 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00539/CM NSEQ 5 EFFN 1.840820 CKSUM 493496906 STATS LOCAL MSV -8.3345 0.71863 STATS LOCAL VITERBI -9.3791 0.71863 STATS LOCAL FORWARD -3.6627 0.71863 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.09092 2.00486 1.63586 1.09474 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 0.00000 * 1 0.76578 2.08027 1.49255 1.68560 1 a - - < 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 2 2.35474 0.97991 2.10459 0.89688 2 u - - < 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 3 0.99397 1.76287 1.45925 1.48753 3 a - - < 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 4 0.20535 2.98254 2.73220 2.66076 4 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 5 1.10875 1.93327 1.61344 1.12039 5 a - - _ 1.38629 1.38629 1.38629 1.38629 0.43940 2.02287 1.49923 0.29523 1.36398 1.09861 0.40547 6 0.84418 1.93696 1.99989 1.23581 7 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05474 3.62548 3.62548 1.46634 0.26236 0.76110 0.62952 7 2.30681 0.35300 2.86558 1.95973 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04834 3.74679 3.74679 1.46634 0.26236 2.03651 0.13982 8 1.04534 1.91417 2.05762 0.98562 9 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04834 3.74679 3.74679 1.46634 0.26236 2.03651 0.13982 9 0.25523 2.78906 2.55817 2.44950 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04834 3.74679 3.74679 1.46634 0.26236 2.03651 0.13982 10 2.19833 2.23519 2.69405 0.33627 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04834 3.74679 3.74679 1.46634 0.26236 0.30241 1.34337 11 2.43142 3.26917 0.20353 2.84384 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 12 0.20535 2.98254 2.73220 2.66076 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 13 2.37264 2.37780 2.87889 0.27732 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 14 2.43142 3.26917 0.20353 2.84384 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 15 2.37264 2.37780 2.87889 0.27732 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 16 2.37264 2.37780 2.87889 0.27732 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.16989 3.85119 2.00258 1.46634 0.26236 1.09861 0.40547 17 0.26403 2.75934 2.53143 2.41721 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.18286 3.73045 1.94399 1.46634 0.26236 0.27377 1.42923 18 2.18664 2.22569 2.68156 0.34072 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04869 3.73959 3.73959 1.46634 0.26236 0.28901 1.38232 19 2.37264 2.37780 2.87889 0.27732 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 20 2.37264 2.37780 2.87889 0.27732 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 21 2.37264 2.37780 2.87889 0.27732 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 22 0.20535 2.98254 2.73220 2.66076 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 23 2.53604 0.27641 3.10516 2.14134 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 24 0.20535 2.98254 2.73220 2.66076 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 25 2.37264 2.37780 2.87889 0.27732 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 26 0.20535 2.98254 2.73220 2.66076 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 27 2.37264 2.37780 2.87889 0.27732 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 28 2.43142 3.26917 0.20353 2.84384 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 29 2.37264 2.37780 2.87889 0.27732 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 30 2.37264 2.37780 2.87889 0.27732 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 31 0.20535 2.98254 2.73220 2.66076 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 32 2.43142 3.26917 0.20353 2.84384 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 33 0.20535 2.98254 2.73220 2.66076 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 34 2.53604 0.27641 3.10516 2.14134 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 35 2.37264 2.37780 2.87889 0.27732 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 36 0.20535 2.98254 2.73220 2.66076 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 37 0.20535 2.98254 2.73220 2.66076 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 38 2.37264 2.37780 2.87889 0.27732 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 39 2.43142 3.26917 0.20353 2.84384 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 40 0.20535 2.98254 2.73220 2.66076 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 41 0.20535 2.98254 2.73220 2.66076 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 42 0.20535 2.98254 2.73220 2.66076 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 43 2.37264 2.37780 2.87889 0.27732 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 44 1.41255 2.55016 0.57904 2.13731 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 45 0.20535 2.98254 2.73220 2.66076 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 46 2.37264 2.37780 2.87889 0.27732 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 47 2.37264 2.37780 2.87889 0.27732 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 48 2.37264 2.37780 2.87889 0.27732 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 49 2.43142 3.26917 0.20353 2.84384 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 50 0.20535 2.98254 2.73220 2.66076 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 51 2.37264 2.37780 2.87889 0.27732 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 52 2.37264 2.37780 2.87889 0.27732 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 53 2.43142 3.26917 0.20353 2.84384 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 54 2.37264 2.37780 2.87889 0.27732 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 55 0.20535 2.98254 2.73220 2.66076 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 56 0.20535 2.98254 2.73220 2.66076 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 57 0.59568 2.16764 2.19072 1.50269 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 58 2.37264 2.37780 2.87889 0.27732 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 59 2.37264 2.37780 2.87889 0.27732 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 60 0.20535 2.98254 2.73220 2.66076 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 61 1.70716 1.85281 0.68653 1.84199 62 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 62 1.73938 1.99406 1.75869 0.66173 63 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 63 0.60356 2.16022 2.18600 1.48956 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 64 0.20535 2.98254 2.73220 2.66076 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 65 2.53604 0.27641 3.10516 2.14134 66 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 66 2.37264 2.37780 2.87889 0.27732 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 67 2.43142 3.26917 0.20353 2.84384 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 68 0.20535 2.98254 2.73220 2.66076 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 69 2.43142 3.26917 0.20353 2.84384 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 70 0.92068 1.60420 2.06187 1.29650 71 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 71 0.90032 1.98625 2.09916 1.09724 72 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 72 1.66588 1.64426 1.58830 0.88298 73 u - - > 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 73 1.43756 2.26973 0.61674 2.12485 74 G - - > 1.38629 1.38629 1.38629 1.38629 0.04344 3.85119 3.85119 1.46634 0.26236 1.09861 0.40547 74 2.21693 1.70073 1.89273 0.58367 75 U - - > 1.38629 1.38629 1.38629 1.38629 0.02196 3.82970 * 1.46634 0.26236 0.00000 * //