INFERNAL1/a [1.1.5 | Sep 2023] NAME serC ACC RF00517 DESC serC leader STATES 165 NODES 46 CLEN 52 W 67 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 22:56:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00517/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 70 EFFN 7.848511 CKSUM 2739045993 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.80 EFP7GF -16.1553 0.71929 ECMLC 0.75621 -7.47633 1.16464 1600000 826074 0.001453 ECMGC 0.39468 -20.27338 -5.97198 1600000 113097 0.003537 ECMLI 0.61571 -8.45576 1.62802 1600000 596454 0.002012 ECMGI 0.42405 -16.81139 -3.94722 1600000 93571 0.004275 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 67 86 -8.371 -8.578 -0.020 -6.992 IL 1 1 2 1 4 1 18 71 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 18 67 86 -9.321 -0.008 -7.975 -0.232 1.041 -1.558 -0.411 D 4 2 3 5 3 0 12 65 85 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 17 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 17 66 85 -9.321 -0.008 -7.975 -0.047 -0.628 0.941 -1.104 D 7 5 3 8 3 0 11 64 84 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 16 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 16 65 84 -9.321 -0.008 -7.975 -1.165 -2.287 1.603 -1.687 D 10 8 3 11 3 0 10 63 83 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 15 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 15 63 83 -9.321 -0.008 -7.975 -1.655 0.583 -2.147 0.969 D 13 11 3 14 3 0 10 62 82 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 14 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 14 62 81 -9.321 -0.008 -7.975 -2.289 -3.924 1.842 -2.800 D 16 14 3 17 3 0 9 61 81 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 13 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 13 61 80 -9.321 -0.008 -7.975 -3.918 -5.405 1.953 -4.653 D 19 17 3 20 3 0 8 60 79 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 13 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 12 60 79 -9.321 -0.008 -7.975 -3.918 -5.405 1.953 -4.653 D 22 20 3 23 3 0 8 59 78 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 12 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 11 59 78 -9.321 -0.008 -7.975 1.555 -0.993 -2.462 -1.405 D 25 23 3 26 3 0 7 58 77 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 11 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 10 58 77 -9.321 -0.008 -7.975 -2.096 1.718 -3.575 -1.352 D 28 26 3 29 3 0 7 57 76 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 10 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 9 57 76 -9.653 -0.008 -7.970 1.954 -4.862 -4.316 -4.578 D 31 29 3 32 3 0 6 56 75 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 9 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 55 - a - - MR 33 32 3 35 3 1 8 56 75 -9.653 -0.008 -7.970 0.526 -0.312 -0.753 0.215 D 34 32 3 35 3 0 5 55 74 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 8 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 54 - a - - MR 36 35 3 38 3 1 7 55 74 -9.653 -0.022 -6.156 0.584 -0.269 -0.753 0.108 D 37 35 3 38 3 0 5 54 73 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 7 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 53 - u - - MR 39 38 3 41 3 1 6 54 73 -9.638 -0.008 -7.956 0.084 -0.547 -0.217 0.481 D 40 38 3 41 3 0 4 53 72 -6.660 -1.837 -0.494 IR 41 41 3 41 3 1 6 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 52 - a - - MR 42 41 3 44 3 1 5 53 72 -9.638 -0.008 -7.956 0.920 -0.210 -0.873 -0.519 D 43 41 3 44 3 0 4 52 71 -6.660 -1.837 -0.494 IR 44 44 3 44 3 1 6 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 51 - c - - MR 45 44 3 47 2 1 4 52 71 -9.864 -0.002 0.228 0.637 -0.820 -0.500 D 46 44 3 47 2 0 4 51 70 -4.713 -0.056 IR 47 47 3 47 2 1 5 53 72 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 16 ] - - - - - - B 48 47 3 49 105 0 3 51 70 [ BEGL 17 ] - - - - - - S 49 48 1 50 4 0 0 31 50 -0.024 -7.720 -7.128 -7.768 [ MATP 18 ] 11 30 C G - - MP 50 49 1 54 6 2 2 31 50 -9.822 -9.762 -0.013 -8.538 -8.818 -9.213 -6.090 -6.021 -5.648 -2.074 -4.197 -5.974 3.800 -5.105 -5.728 -1.930 -5.882 -1.754 -0.681 -6.115 -1.292 -4.515 ML 51 49 1 54 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 1 54 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 1 54 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 29 C G - - MP 56 55 6 60 6 2 2 29 48 -9.822 -9.762 -0.013 -8.538 -8.818 -9.213 -4.882 -4.635 -4.746 -0.098 -3.559 -5.387 3.421 -4.263 -4.681 0.791 -5.094 -2.323 0.591 -5.027 -1.127 -3.459 ML 57 55 6 60 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 28 C G - - MP 62 61 6 66 6 2 2 27 46 -9.822 -6.137 -0.032 -8.538 -8.818 -9.213 -5.589 -5.591 -5.197 -1.639 -3.737 -5.553 3.117 -4.571 -5.217 -1.488 -5.480 -3.513 2.545 -5.587 -1.382 -4.004 ML 63 61 6 66 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 27 45 -2.582 -0.431 -6.093 -4.261 -5.367 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 26 C G - - MP 68 67 6 72 6 2 2 25 44 -9.822 -9.762 -0.013 -8.538 -8.818 -9.213 -5.834 -5.910 -5.339 -2.000 -3.804 -5.615 3.577 -4.669 -5.388 -1.879 -5.598 -3.935 1.489 -5.777 -1.470 -4.178 ML 69 67 6 72 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 25 U A - - MP 74 73 6 78 6 2 2 23 42 -9.822 -9.762 -0.013 -8.538 -8.818 -9.213 -5.939 -6.065 -5.404 -2.204 -3.848 -5.647 1.204 -4.725 -5.468 -2.103 -5.657 -4.179 3.628 -5.859 -0.908 -4.258 ML 75 73 6 78 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 24 C G - - MP 80 79 6 84 4 2 2 21 40 -6.430 -8.578 -0.032 -6.992 -7.416 -7.560 -6.535 -3.783 -4.902 -6.574 3.936 -6.104 -6.895 -3.750 -6.608 -5.743 -1.897 -7.317 -2.907 -5.698 ML 81 79 6 84 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 83 79 6 84 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 84 84 5 84 4 1 1 23 42 -1.824 -2.508 -0.970 -4.993 0.000 0.000 0.000 0.000 IR 85 85 6 85 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - C - - - ML 86 85 6 88 3 1 1 18 36 -9.321 -0.008 -7.975 -4.487 1.942 -5.092 -3.559 D 87 85 6 88 3 0 0 18 36 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - C - - - ML 89 88 3 91 3 1 1 17 35 -9.321 -0.008 -7.975 -4.487 1.942 -5.092 -3.559 D 90 88 3 91 3 0 0 17 35 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - C - - - ML 92 91 3 94 3 1 1 15 34 -9.321 -0.008 -7.975 -3.968 1.892 -4.637 -2.448 D 93 91 3 94 3 0 0 16 34 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - A - - - ML 95 94 3 97 3 1 1 14 32 -9.321 -0.008 -7.975 1.954 -4.862 -4.316 -4.578 D 96 94 3 97 3 0 0 15 33 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - A - - - ML 98 97 3 100 3 1 1 12 31 -9.321 -0.008 -7.975 1.652 -0.984 -2.726 -2.321 D 99 97 3 100 3 0 0 13 32 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - C - - - ML 101 100 3 103 2 1 1 1 1 * 0.000 -4.487 1.942 -5.092 -3.559 D 102 100 3 103 2 0 0 0 0 * 0.000 IL 103 103 3 103 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 104 103 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 105 48 1 106 3 0 0 32 51 -9.321 -0.008 -7.975 IL 106 106 2 106 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - C - - - ML 107 106 2 109 3 1 1 32 51 -9.321 -0.008 -7.975 -1.804 1.790 -3.926 -2.408 D 108 106 2 109 3 0 0 31 50 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - g - - - ML 110 109 3 112 3 1 1 31 50 -9.321 -0.008 -7.975 0.372 -1.432 0.453 -0.050 D 111 109 3 112 3 0 0 30 49 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - a - - - ML 113 112 3 115 5 1 1 30 48 -3.055 -0.198 -8.149 -8.361 -9.253 0.571 -0.100 -0.808 0.015 D 114 112 3 115 5 0 0 28 47 -4.959 -0.803 -4.221 -2.596 -2.508 IL 115 115 3 115 5 1 1 30 48 -3.238 -0.258 -4.916 -6.749 -6.022 0.000 0.000 0.000 0.000 [ MATP 35 ] 35 50 c g - - MP 116 115 3 120 6 2 2 29 47 -9.822 -9.762 -0.013 -8.538 -8.818 -9.213 -0.641 -1.179 -0.890 0.957 -2.004 -2.435 2.161 -2.364 -2.080 0.649 -2.654 -0.725 1.109 -0.960 0.384 -0.338 ML 117 115 3 120 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 3 120 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 3 120 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 36 49 U A - - MP 122 121 6 126 6 2 2 27 45 -9.822 -9.762 -0.013 -8.538 -8.818 -9.213 -5.144 -4.767 -4.981 -0.922 -3.890 -5.648 0.786 -4.539 -4.911 -0.852 -5.308 0.154 3.504 -5.385 -1.515 -3.748 ML 123 121 6 126 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 37 48 A U - - MP 128 127 6 132 6 2 2 25 43 -9.822 -9.762 -0.013 -8.538 -8.818 -9.213 -4.989 -3.817 -5.116 3.577 -5.969 -7.114 -1.551 -5.149 -4.816 -0.225 -5.427 -0.344 0.738 -5.973 -3.500 -3.806 ML 129 127 6 132 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 38 47 u a - - MP 134 133 6 138 6 2 2 23 41 -9.822 -9.762 -0.013 -8.538 -8.818 -9.213 -4.434 -4.397 -4.381 -0.125 -3.404 -5.034 0.963 -4.079 -4.368 -0.506 -4.805 -2.371 2.863 -4.625 2.059 -1.535 ML 135 133 6 138 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 39 46 C G - - MP 140 139 6 144 6 2 2 21 39 -9.822 -9.762 -0.013 -8.538 -8.818 -9.213 -7.416 -7.560 -6.535 -3.783 -4.902 -6.574 3.936 -6.104 -6.895 -3.750 -6.608 -5.743 -1.897 -7.317 -2.907 -5.698 ML 141 139 6 144 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 40 45 U G - - MP 146 145 6 150 4 2 2 19 37 -8.371 -8.578 -0.020 -6.992 0.111 -5.765 -5.456 -2.043 -4.011 -5.783 0.280 -4.823 -5.483 -2.129 -5.697 -3.604 -0.699 -6.015 3.617 -4.327 ML 147 145 6 150 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 149 145 6 150 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 150 150 5 150 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 152 151 6 154 3 1 1 15 34 -9.321 -0.008 -7.975 -2.763 -3.841 1.813 -1.893 D 153 151 6 154 3 0 0 16 34 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - g - - - ML 155 154 3 157 3 1 1 14 32 -9.321 -0.008 -7.975 0.201 -0.881 0.467 -0.112 D 156 154 3 157 3 0 0 15 33 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 158 157 3 160 3 1 1 12 31 -9.321 -0.008 -7.975 1.503 -3.193 -0.122 -2.852 D 159 157 3 160 3 0 0 13 32 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - A - - - ML 161 160 3 163 2 1 1 1 1 * 0.000 1.792 -3.525 -1.520 -3.298 D 162 160 3 163 2 0 0 0 0 * 0.000 IL 163 163 3 163 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 164 163 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME serC ACC RF00517 DESC serC leader LENG 52 MAXL 117 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 22:56:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00517/CM NSEQ 70 EFFN 13.735962 CKSUM 2739045993 STATS LOCAL MSV -7.2726 0.71929 STATS LOCAL VITERBI -7.8800 0.71929 STATS LOCAL FORWARD -4.3826 0.71929 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36259 1.25731 1.26074 1.73647 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 0.00000 * 1 1.59156 0.57225 2.63765 1.82878 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 2 1.46753 1.81347 0.64497 2.50424 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 3 2.33994 3.15263 0.23047 2.70653 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 4 3.02149 0.92073 3.17149 0.67118 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 5 3.19829 4.55996 0.08543 3.48714 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 6 4.65773 5.77164 0.01847 5.16767 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 7 4.65773 5.77164 0.01847 5.16767 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 8 0.25201 2.09522 3.61247 2.62094 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 9 3.03707 0.15132 4.33378 2.53410 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 10 0.01644 5.44627 5.03910 5.20136 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 11 4.59283 0.09701 3.45358 2.98196 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 12 3.00541 0.28324 2.20237 2.44647 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 13 4.39495 0.55992 4.24513 0.91112 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 14 4.52605 0.23370 4.41348 1.68490 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 15 4.60345 2.11097 4.51167 0.15329 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 16 5.50707 0.02110 5.52814 4.35423 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02131 4.19893 5.10439 0.67537 0.71125 1.09861 0.40547 17 5.06680 0.02280 5.40777 4.44340 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 18 5.06680 0.02280 5.40777 4.44340 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 19 4.69715 0.05212 5.06350 3.34284 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 20 0.01644 5.44627 5.03909 5.20136 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 21 0.20118 2.03340 3.80176 3.53986 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 22 5.06680 0.02280 5.40777 4.44340 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 23 4.56116 5.64850 0.01866 5.40030 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 24 0.18222 4.63843 1.93705 4.36003 25 A - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 25 1.74820 4.54028 0.22150 4.27403 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.03457 3.57893 5.10439 0.38968 1.13096 1.09861 0.40547 26 0.94164 4.38848 0.54170 4.14564 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 27 2.64603 2.25859 0.26545 2.85231 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 28 3.54498 4.57642 0.07521 3.40254 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 29 2.70032 0.10603 4.67215 3.72713 31 C - - - 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 30 1.11554 2.63460 1.00291 1.45371 32 g - - - 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 31 0.95410 1.42234 2.01048 1.42808 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.15663 1.97396 5.10439 0.08522 2.50486 1.09861 0.40547 32 1.50562 1.04589 2.02276 1.22263 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 33 4.00534 2.61245 2.38812 0.20258 36 U - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 34 0.21330 4.61310 2.63455 2.20348 37 A - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 35 3.16429 2.64995 3.73839 0.14698 38 U - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 36 5.50889 0.02109 5.52941 4.35469 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 37 2.46974 2.96939 4.28851 0.16213 40 U - - < 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 38 3.89581 4.68139 0.10102 2.71067 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 39 1.25374 2.07754 0.99416 1.51735 42 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 40 0.31067 4.30068 1.43570 4.16439 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 41 0.11596 4.39056 2.48484 4.28614 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 42 2.29792 4.51555 0.13653 4.12206 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 43 4.57438 5.67223 0.01832 5.42616 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 44 0.63397 3.91568 0.96087 2.70257 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 45 2.22271 3.46149 4.40050 0.16484 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 46 0.21447 4.11590 2.49584 2.36134 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 47 1.66771 1.83519 0.79902 1.59963 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.02346 5.10439 4.06755 1.46634 0.26236 1.09861 0.40547 48 1.23156 0.84730 2.00597 1.93060 51 c - - : 1.38629 1.38629 1.38629 1.38629 0.01235 5.09328 5.09328 1.46634 0.26236 1.57283 0.23251 49 0.69063 1.49548 2.06431 1.91261 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.01235 5.09328 5.09328 1.46634 0.26236 1.57283 0.23251 50 1.35888 1.80723 1.50839 1.02812 53 u - - : 1.38629 1.38629 1.38629 1.38629 0.01235 5.09328 5.09328 1.46634 0.26236 0.53599 0.87969 51 0.94289 1.56294 1.96461 1.34412 54 a - - : 1.38629 1.38629 1.38629 1.38629 0.01221 5.10439 5.10439 1.46634 0.26236 1.09861 0.40547 52 0.98794 1.60207 1.96523 1.25157 55 a - - : 1.38629 1.38629 1.38629 1.38629 0.00613 5.09830 * 1.46634 0.26236 0.00000 * //