INFERNAL1/a [1.1.5 | Sep 2023] NAME S-element ACC RF00490 DESC S-element STATES 205 NODES 47 CLEN 67 W 84 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 04:00:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00490/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 29 EFFN 4.733032 CKSUM 3456039134 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.20 NC 46.30 EFP7GF -10.7361 0.71912 ECMLC 0.52920 -9.34713 2.57984 1600000 661205 0.001815 ECMGC 0.40629 -18.54876 -4.30863 1600000 130234 0.003071 ECMLI 0.51970 -7.38637 3.92509 1600000 428760 0.002799 ECMGI 0.44742 -12.51821 -0.69821 1600000 79221 0.005049 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 104 -7.793 -8.000 -0.029 -6.414 IL 1 1 2 1 4 1 20 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 20 84 104 -8.763 -0.012 -7.417 0.370 -0.276 -1.352 0.575 D 4 2 3 5 3 0 14 82 103 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 19 83 103 -8.763 -0.012 -7.417 -3.109 -4.508 1.915 -3.851 D 7 5 3 8 3 0 13 81 102 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 18 82 102 -8.763 -0.012 -7.417 -2.983 -2.740 -3.762 1.868 D 10 8 3 11 3 0 12 80 100 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 17 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 17 81 101 -8.763 -0.012 -7.417 -3.576 1.892 -4.325 -2.684 D 13 11 3 14 3 0 11 79 99 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 16 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 16 80 100 -8.763 -0.012 -7.417 1.911 -3.934 -3.431 -3.627 D 16 14 3 17 3 0 10 78 98 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 16 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 16 79 99 -8.763 -0.012 -7.417 1.911 -3.934 -3.431 -3.627 D 19 17 3 20 3 0 9 77 97 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 15 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 15 78 98 -8.763 -0.012 -7.417 -3.109 -4.508 1.915 -3.851 D 22 20 3 23 3 0 8 76 96 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 14 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 14 77 97 -9.113 -0.011 -7.430 1.297 -0.641 -1.720 -0.742 D 25 23 3 26 3 0 8 75 95 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 12 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 81 - G - - MR 27 26 3 29 3 1 13 76 96 -9.113 -0.011 -7.430 -1.014 -3.134 1.690 -2.608 D 28 26 3 29 3 0 6 74 94 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 11 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 80 - U - - MR 30 29 3 32 3 1 12 75 95 -9.113 -0.011 -7.430 -1.137 -1.385 -2.341 1.568 D 31 29 3 32 3 0 5 73 93 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 10 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 79 - A - - MR 33 32 3 35 5 1 12 74 94 -1.716 -0.548 -7.627 -7.839 -8.731 1.911 -3.934 -3.431 -3.627 D 34 32 3 35 5 0 4 72 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 10 73 93 -3.662 -0.270 -7.173 -3.768 -6.447 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 77 g c - - MP 36 35 3 40 6 2 13 72 92 -9.468 -9.408 -0.016 -8.184 -8.464 -8.859 -1.288 -1.078 -2.090 0.993 -2.116 -2.783 1.138 -2.402 0.979 1.678 -1.206 0.164 0.980 -2.175 -0.319 -1.299 ML 37 35 3 40 6 1 6 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 6 71 91 -7.281 -6.010 -1.157 -5.988 -1.122 -4.202 0.853 -0.731 -0.460 -0.211 D 39 35 3 40 6 0 2 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 8 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 8 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 76 U A - - MP 42 41 6 46 6 2 12 70 90 -9.490 -9.429 -0.016 -8.206 -8.486 -8.881 -3.893 -3.878 -3.893 -0.181 -1.494 -4.594 1.311 -3.668 -3.882 0.308 -4.350 -1.900 3.160 -4.105 0.255 -2.777 ML 43 41 6 46 6 1 6 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 6 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 7 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 7 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 75 c g - - MP 48 47 6 52 6 2 10 68 88 -9.490 -9.429 -0.093 -8.206 -4.210 -8.881 -2.905 -2.994 -0.920 0.392 -1.436 -3.822 2.732 -3.063 -3.041 0.438 -3.572 -1.271 1.349 -3.190 0.870 -2.083 ML 49 47 6 52 6 1 5 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 5 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 1 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 7 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 7 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 74 u a - - MP 54 53 6 58 6 2 9 66 86 -9.414 -9.354 -0.053 -5.165 -8.410 -8.805 -1.277 -1.997 -1.997 0.972 -1.924 -2.847 1.600 -2.305 -1.390 0.851 -2.626 -0.608 2.033 -1.470 0.683 -1.233 ML 55 53 6 58 6 1 5 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 5 65 85 -7.813 -3.113 -0.961 -6.520 -1.654 -4.734 0.607 -0.914 0.198 -0.323 D 57 53 6 58 6 0 1 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 6 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 6 66 86 -2.540 -0.445 -6.052 -4.219 -5.325 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 72 u a - - MP 60 59 6 64 6 2 8 64 84 -9.457 -9.396 -0.101 -5.481 -4.632 -8.847 -1.258 -2.054 -1.490 0.926 -1.973 -2.905 1.394 -2.357 -2.114 0.814 -1.910 -0.657 2.220 -2.198 0.765 -1.288 ML 61 59 6 64 6 1 5 63 83 -6.735 -7.081 -0.802 -1.490 -6.931 -4.461 -0.117 -0.460 -0.730 0.806 MR 62 59 6 64 6 1 4 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 1 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 6 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 6 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 71 u a - - MP 66 65 6 70 4 2 7 62 82 -7.633 -7.840 -0.033 -6.254 -1.395 -2.613 -2.643 0.647 -1.177 -3.471 1.647 -2.783 -2.674 0.655 -3.224 -0.988 2.523 -2.798 0.477 -1.761 ML 67 65 6 70 4 1 4 62 82 -4.067 -4.249 -0.394 -2.979 0.913 -0.783 -0.519 -0.255 MR 68 65 6 70 4 1 2 62 82 -5.519 -2.597 -1.141 -1.476 1.144 -1.028 -0.774 -0.483 D 69 65 6 70 4 0 1 61 81 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 5 64 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 5 63 83 -1.560 -0.717 -4.260 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - G - - - ML 72 71 6 74 3 1 6 60 80 -8.763 -0.012 -7.417 -0.543 -2.837 1.572 -2.317 D 73 71 6 74 3 0 0 59 79 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 4 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - G - - - ML 75 74 3 77 5 1 6 59 79 -7.812 -0.024 -7.627 -7.839 -8.731 -1.051 -3.158 1.698 -2.631 D 76 74 3 77 5 0 0 58 78 -4.959 -0.803 -4.221 -2.596 -2.508 IL 77 77 3 77 5 1 3 59 79 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 69 C G - - MP 78 77 3 82 6 2 7 58 78 -9.490 -9.429 -0.016 -8.206 -8.486 -8.881 -1.755 -3.927 -3.874 -0.394 0.370 -4.551 3.331 -3.740 -3.902 -0.304 -4.346 -2.103 0.521 -4.100 -0.879 -2.873 ML 79 77 3 82 6 1 2 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 2 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 2 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 3 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 68 g u - - MP 84 83 6 88 6 2 6 56 76 -9.490 -9.429 -0.016 -8.206 -8.486 -8.881 -4.139 -0.245 -4.349 2.549 -5.467 -5.698 -1.182 -4.478 -4.024 0.707 -4.522 2.648 -1.355 -4.893 -3.026 -3.081 ML 85 83 6 88 6 1 2 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 2 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 2 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 2 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 67 C G - - MP 90 89 6 94 6 2 5 54 74 -9.490 -9.429 -0.016 -8.206 -8.486 -8.881 -5.104 -5.183 -4.688 -1.355 -3.239 -5.009 3.060 -4.083 -4.736 -1.233 -4.977 -3.256 0.232 -5.093 2.347 -3.554 ML 91 89 6 94 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 2 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 2 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 66 C G - - MP 96 95 6 100 4 2 3 52 72 -7.793 -8.000 -0.029 -6.414 -6.316 -6.371 -5.677 -2.545 -4.120 -5.855 3.863 -5.123 -5.851 -2.464 -5.853 -4.419 -0.861 -6.263 -1.939 -4.656 ML 97 95 6 100 4 1 1 53 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 52 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 51 71 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 2 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - G - - - ML 102 101 6 104 5 1 2 50 70 -2.721 -0.258 -7.627 -7.839 -8.731 -0.101 -1.448 1.138 -0.999 D 103 101 6 104 5 0 0 48 68 -4.959 -0.803 -4.221 -2.596 -2.508 IL 104 104 3 104 5 1 1 50 70 -2.097 -0.734 -2.812 -6.880 -6.154 0.000 0.000 0.000 0.000 [ MATP 25 ] 25 65 u a - - MP 105 104 3 109 6 2 3 48 68 -6.424 -9.388 -0.032 -8.165 -8.445 -8.840 0.021 -2.184 -2.190 0.848 -2.060 -3.034 1.420 -2.462 -1.264 0.767 -2.809 -0.743 2.268 -2.336 0.351 -1.403 ML 106 104 3 109 6 1 1 47 67 -6.823 -7.169 -1.237 -0.973 -7.018 -4.548 0.439 -0.520 -0.591 0.360 MR 107 104 3 109 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 48 68 -2.091 -3.169 -0.806 -4.824 -5.600 -5.261 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 28 64 u a - - MP 111 110 6 115 6 2 3 46 66 -9.468 -9.408 -0.016 -8.184 -8.464 -8.859 -2.626 -2.725 -2.782 0.728 -2.493 -3.621 1.365 -2.943 -2.815 0.606 -3.369 -1.078 2.794 -1.807 0.039 -1.199 ML 112 110 6 115 6 1 1 45 65 -6.583 -6.929 -0.927 -1.338 -6.779 -4.308 0.008 -0.405 -0.592 0.657 MR 113 110 6 115 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 29 63 u a - - MP 117 116 6 121 6 2 3 44 64 -9.490 -9.429 -0.016 -8.206 -8.486 -8.881 -1.184 -2.119 -2.125 0.896 -1.419 -2.976 1.492 -2.411 -2.179 0.793 -2.748 -0.386 2.132 -2.268 0.701 -0.615 ML 118 116 6 121 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 30 62 c g - - MP 123 122 6 127 6 2 3 42 62 -4.250 -4.059 -0.186 -8.206 -8.486 -8.881 -2.036 -2.204 -2.217 0.853 -1.024 -3.065 1.722 -2.484 -2.269 1.041 -2.835 -0.742 1.309 -1.676 1.596 -0.706 ML 124 122 6 127 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 41 61 -3.306 -3.569 -0.410 -5.224 -6.000 -5.661 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 41 61 -2.949 -0.322 -6.460 -4.628 -5.734 0.000 0.000 0.000 0.000 [ MATP 29 ] 32 60 g u - - MP 129 128 6 133 6 2 3 40 60 -9.490 -4.838 -0.066 -8.206 -8.486 -8.881 -2.167 -0.074 -4.000 0.444 -4.198 -2.056 0.530 -2.839 0.509 0.837 0.107 2.526 -0.513 -2.708 -1.531 -1.835 ML 130 128 6 133 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 39 59 -2.742 -0.379 -6.253 -4.421 -5.527 0.000 0.000 0.000 0.000 [ MATP 30 ] 33 58 g c - - MP 135 134 6 139 4 2 2 38 58 -7.793 -4.949 -0.117 -4.608 -1.851 -1.802 -2.070 0.981 -1.426 -2.812 1.207 -2.388 -0.444 1.686 -0.324 0.824 1.154 -2.170 -0.268 -1.291 ML 136 134 6 139 4 1 1 39 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 38 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 37 57 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 40 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 39 59 -1.351 -0.832 -4.429 0.000 0.000 0.000 0.000 [ MATL 31 ] 34 - u - - - ML 141 140 6 143 3 1 1 35 54 -9.073 -0.189 -3.050 -0.873 0.226 -1.085 0.858 D 142 140 6 143 3 0 0 34 53 -5.970 -0.541 -1.753 IL 143 143 3 143 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 55 - u - - MR 144 143 3 146 5 1 1 34 53 -7.648 -0.026 -7.463 -7.676 -8.567 -0.166 -1.131 0.274 0.529 D 145 143 3 146 5 0 0 33 52 -6.264 -0.332 -3.891 -5.322 -3.316 IR 146 146 3 146 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 54 G U - - MP 147 146 3 151 4 2 2 33 52 -7.793 -8.000 -0.029 -6.414 -4.348 -2.869 -4.683 0.434 -6.097 -6.019 -1.506 -4.626 -4.103 0.740 -4.546 3.484 -1.768 -5.423 -3.451 -0.664 ML 148 146 3 151 4 1 1 34 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 3 151 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - A - - - ML 153 152 6 155 3 1 1 30 49 -5.331 -0.045 -7.430 1.452 -2.405 -0.287 -1.962 D 154 152 6 155 3 0 0 29 48 -5.620 -0.734 -1.403 IL 155 155 3 155 3 1 1 31 49 -2.098 -0.480 -4.337 0.000 0.000 0.000 0.000 [ MATR 35 ] - 53 - C - - MR 156 155 3 158 5 1 1 29 48 -7.812 -0.070 -7.627 -4.817 -8.731 -3.576 1.892 -4.325 -2.684 D 157 155 3 158 5 0 0 28 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 38 52 G C - - MP 159 158 3 163 6 2 2 28 47 -9.463 -9.403 -0.016 -8.179 -8.459 -8.854 -5.318 -0.262 -5.415 -0.207 -6.358 -5.034 -1.463 -5.880 -4.849 3.684 -5.135 -1.171 -1.740 -4.837 -3.517 -4.327 ML 160 158 3 163 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 27 45 -7.342 -6.071 -1.085 -6.049 -1.183 -4.263 -0.026 0.414 -0.724 0.110 D 162 158 3 163 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 39 51 C G - - MP 165 164 6 169 6 2 2 26 45 -9.490 -9.429 -0.016 -8.206 -8.486 -8.881 -4.179 -4.194 -4.074 -0.491 -3.026 -4.653 3.190 -3.739 -4.084 -0.354 -1.782 -2.248 0.629 -4.340 1.426 -2.978 ML 166 164 6 169 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 40 50 g u - - MP 171 170 6 175 6 2 2 24 43 -9.490 -9.429 -0.016 -8.206 -8.486 -8.881 -4.141 -2.888 -4.373 2.236 -5.399 -5.694 -1.094 -4.459 -4.010 0.605 -4.498 2.910 -1.305 -4.933 -2.965 -0.356 ML 172 170 6 175 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 41 49 G U - - MP 177 176 6 181 6 2 2 22 41 -9.490 -9.429 -0.016 -8.206 -8.486 -8.881 -4.167 -2.716 -4.535 1.464 -5.731 -5.562 -1.272 -4.491 -3.956 0.416 -4.352 3.220 -1.539 -5.086 -3.189 0.316 ML 178 176 6 181 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 42 48 a u - - MP 183 182 6 187 4 2 2 20 39 -7.793 -8.000 -0.029 -6.414 -2.562 -2.490 -2.697 2.756 -2.719 -3.559 0.837 -2.004 -2.791 1.116 -3.332 0.126 0.624 -2.845 -0.465 -0.831 ML 184 182 6 187 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 186 182 6 187 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 187 187 5 187 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - U - - - ML 189 188 6 191 3 1 1 17 35 -8.763 -0.047 -5.068 -0.881 -1.231 -2.172 1.490 D 190 188 6 191 3 0 0 17 35 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - U - - - ML 192 191 3 194 3 1 1 16 34 -8.728 -0.012 -7.382 -1.214 -1.279 -1.700 1.510 D 193 191 3 194 3 0 0 15 34 -6.644 -0.993 -1.036 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - U - - - ML 195 194 3 197 3 1 1 14 33 -8.763 -0.012 -7.417 -2.983 -2.740 -3.762 1.868 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - C - - - ML 198 197 3 200 3 1 1 12 31 -8.763 -0.012 -7.417 -3.576 1.892 -4.325 -2.684 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - U - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -2.200 -1.453 -2.948 1.717 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME S-element ACC RF00490 DESC S-element LENG 67 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 04:00:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00490/CM NSEQ 29 EFFN 7.650024 CKSUM 3456039134 STATS LOCAL MSV -7.8909 0.71912 STATS LOCAL VITERBI -9.0672 0.71912 STATS LOCAL FORWARD -3.9025 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53160 1.62378 1.21160 1.24154 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 0.00000 * 1 1.10314 1.58363 2.51578 0.96195 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 2 4.07515 5.10219 0.03384 4.58517 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 3 4.05260 3.81472 4.60286 0.05071 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 4 4.46745 0.04168 4.89208 3.82418 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 5 0.03317 4.72444 4.34678 4.52818 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 6 0.03317 4.72444 4.34678 4.52818 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 7 4.07515 5.10219 0.03384 4.58517 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 8 0.40248 1.85349 2.93272 2.10869 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.05406 4.37875 3.21680 1.46634 0.26236 1.09861 0.40547 9 1.73261 2.02524 0.63933 1.81051 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.02613 4.35082 4.35082 1.46634 0.26236 0.48597 0.95477 10 3.12362 1.91108 2.55251 0.31444 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 11 2.21801 0.65291 2.46702 1.25243 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.12716 4.37875 2.23617 1.46634 0.26236 1.09861 0.40547 12 1.78889 1.54080 1.75766 0.80699 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.02809 4.27967 4.27967 1.46634 0.26236 0.21083 1.66026 13 1.76877 1.73540 1.83177 0.70725 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.09702 4.37875 2.52666 1.46634 0.26236 1.09861 0.40547 14 2.00554 1.54402 2.17057 0.62031 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.02726 4.30898 4.30898 1.46634 0.26236 0.27294 1.43188 15 1.83016 3.77462 0.24263 3.43876 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 16 2.23289 4.01145 0.16379 3.65904 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 17 2.88546 0.20542 3.27435 2.38567 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 18 0.78167 4.23547 0.67815 3.89567 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 19 4.02054 0.59250 3.89362 0.89466 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 20 4.79261 0.04742 4.74392 3.52950 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 21 1.52386 2.56013 0.50009 2.31912 21 G - - - 1.38629 1.38629 1.38629 1.38629 0.20599 1.75090 4.37875 0.42096 1.06833 1.09861 0.40547 22 1.59543 1.78369 1.90787 0.73238 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.04432 3.47976 4.37875 0.98603 0.46690 1.09861 0.40547 23 2.09388 1.79460 2.13573 0.52351 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 24 1.82768 1.60693 1.81276 0.74337 29 u - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 25 2.00240 1.37978 1.75513 0.81991 30 u - - < 1.38629 1.38629 1.38629 1.38629 0.12699 2.23762 4.37875 0.22045 1.62028 1.09861 0.40547 26 2.19595 2.78670 0.24548 3.10568 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 27 1.88715 1.81798 0.71734 1.61901 33 g - - < 1.38629 1.38629 1.38629 1.38629 0.05488 4.37875 3.19759 1.46634 0.26236 1.09861 0.40547 28 2.26780 1.16650 2.22403 0.74059 34 u - - - 1.38629 1.38629 1.38629 1.38629 0.02615 4.35002 4.35002 1.46634 0.26236 0.47862 0.96663 29 2.68171 4.21007 0.15213 2.85020 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 30 0.32025 3.57878 1.55610 3.34778 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.08698 3.30437 3.06659 0.58282 0.81717 1.09861 0.40547 31 2.31245 4.24070 0.13841 4.14479 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.02631 4.34412 4.34412 1.46634 0.26236 0.43079 1.04980 32 3.58690 0.41749 2.92841 1.34655 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 33 1.14944 4.20088 0.51514 2.64811 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 34 1.77325 4.23381 0.33889 2.27144 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 35 0.67474 2.15502 1.58041 1.77834 42 A - - < 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 36 2.15068 2.45303 3.29343 0.27386 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05052 4.37875 3.30437 1.46634 0.26236 1.09861 0.40547 37 2.51569 2.50159 2.75123 0.25697 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02604 4.35427 4.35427 1.46634 0.26236 0.52059 0.90182 38 4.05260 3.81472 4.60286 0.05071 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 39 4.46745 0.04168 4.89208 3.82418 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 40 3.36606 2.55866 3.88061 0.14222 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 41 2.32183 2.05340 1.95896 0.45791 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 42 4.02486 2.88664 3.96494 0.09717 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 43 3.93962 2.83418 3.90178 0.10362 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 44 2.65809 3.49964 0.14869 3.27354 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 45 3.91098 0.10513 3.89764 2.82215 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 46 4.46745 0.04168 4.89208 3.82418 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 47 4.12604 2.46506 4.03770 0.12646 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.15355 4.37875 2.04173 1.46634 0.26236 1.09861 0.40547 48 1.58124 2.36728 1.11927 0.98343 55 u - - - 1.38629 1.38629 1.38629 1.38629 0.06147 3.09207 4.25402 0.91657 0.51064 0.17666 1.82054 49 1.51249 1.33215 1.41711 1.29713 58 u - - > 1.38629 1.38629 1.38629 1.38629 0.09078 2.60050 4.37875 0.30921 1.32435 1.09861 0.40547 50 1.75736 1.89798 1.84482 0.65474 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.14257 2.11749 4.37875 0.19680 1.72233 1.09861 0.40547 51 1.60231 1.82654 0.78331 1.71086 62 g - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 52 0.97973 2.06497 1.23001 1.58243 63 a - - > 1.38629 1.38629 1.38629 1.38629 0.05406 4.37875 3.21680 1.46634 0.26236 1.09861 0.40547 53 0.69170 2.17094 1.48804 1.83642 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.05199 4.35082 3.27644 1.46634 0.26236 1.64792 0.21375 54 0.68172 2.22588 1.41184 1.94782 65 A - - > 1.38629 1.38629 1.38629 1.38629 0.02681 4.32564 4.32564 1.46634 0.26236 0.32952 1.27037 55 3.78823 4.88052 0.04105 4.60629 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 56 2.90973 4.02805 0.10026 3.76785 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 57 4.03716 2.17370 3.98089 0.16260 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 58 1.51717 3.42298 0.34611 3.20347 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.08379 3.38748 3.06659 0.62679 0.76422 1.09861 0.40547 59 0.66883 2.35450 1.30573 2.10558 71 A - - > 1.38629 1.38629 1.38629 1.38629 0.07246 4.34412 2.86624 1.46634 0.26236 0.43079 1.04980 60 0.94318 2.04538 1.18076 1.74735 72 a - - > 1.38629 1.38629 1.38629 1.38629 0.05120 3.30188 4.33539 0.60408 0.79093 0.37586 1.16059 61 1.02709 1.93300 1.15475 1.70319 74 a - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 62 1.73891 2.63240 0.41085 2.41580 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 63 0.39981 2.65376 1.60036 2.85874 76 A - - > 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 64 1.11153 1.27817 1.66744 1.59126 77 a - - > 1.38629 1.38629 1.38629 1.38629 0.43577 1.07678 4.37875 0.07206 2.66604 1.09861 0.40547 65 0.03317 4.72444 4.34678 4.52818 79 A - - : 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 66 2.36750 2.58430 3.42540 0.22527 80 U - - : 1.38629 1.38629 1.38629 1.38629 0.02540 4.37875 4.37875 1.46634 0.26236 1.09861 0.40547 67 2.20353 3.99298 0.16848 3.64208 81 G - - : 1.38629 1.38629 1.38629 1.38629 0.01278 4.36613 * 1.46634 0.26236 0.00000 * //