INFERNAL1/a [1.1.5 | Sep 2023] NAME ctRNA_p42d ACC RF00489 DESC ctRNA STATES 142 NODES 36 CLEN 46 W 61 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 19:10:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00489/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 4.379883 CKSUM 420918927 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.00 NC 49.90 EFP7GF -13.4603 0.71967 ECMLC 0.67768 -5.12087 3.79581 1600000 505208 0.002375 ECMGC 0.45471 -16.52185 -2.75115 1600000 209650 0.001908 ECMLI 0.67838 -3.68656 4.73879 1600000 364286 0.003294 ECMGI 0.49777 -12.32073 -0.37287 1600000 153087 0.002613 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 61 79 -7.710 -7.917 -0.031 -6.331 IL 1 1 2 1 4 1 7 66 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 7 61 80 -8.683 -0.012 -7.337 1.901 -3.790 -3.296 -3.473 D 4 2 3 5 3 0 3 60 79 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 6 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 6 60 78 -8.683 -0.104 -3.898 -2.978 -4.365 1.906 -3.718 D 7 5 3 8 3 0 2 59 78 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 6 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 7 59 77 -8.593 -0.013 -7.247 1.564 -2.347 -0.777 -1.924 D 10 8 3 11 3 0 2 57 76 -7.121 -2.634 -0.266 IL 11 11 3 11 3 1 5 62 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 6 58 76 -8.949 -0.012 -7.267 1.446 -2.210 -0.393 -1.748 D 13 11 3 14 3 0 2 57 75 -6.265 -0.424 -2.048 IL 14 14 3 14 3 1 4 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 49 - C - - MR 15 14 3 17 3 1 5 57 75 -9.036 -0.012 -7.354 -2.282 1.640 -3.166 -0.818 D 16 14 3 17 3 0 0 55 74 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 4 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 48 - G - - MR 18 17 3 20 3 1 5 56 74 -9.036 -0.012 -7.354 -2.978 -4.365 1.906 -3.718 D 19 17 3 20 3 0 0 54 73 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 3 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 47 - U - - MR 21 20 3 23 3 1 4 55 73 -9.036 -0.012 -7.354 -2.842 -2.618 -3.619 1.855 D 22 20 3 23 3 0 0 53 72 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 3 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 46 - U - - MR 24 23 3 26 3 1 4 54 72 -9.036 -0.012 -7.354 -2.842 -2.618 -3.619 1.855 D 25 23 3 26 3 0 0 52 71 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 2 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 45 - U - - MR 27 26 3 29 3 1 4 53 71 -9.036 -0.012 -7.354 -2.842 -2.618 -3.619 1.855 D 28 26 3 29 3 0 0 51 70 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 2 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 44 - U - - MR 30 29 3 32 3 1 3 52 70 -9.036 -0.012 -7.354 -2.842 -2.618 -3.619 1.855 D 31 29 3 32 3 0 0 50 68 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 43 - C - - MR 33 32 3 35 3 1 3 51 69 -9.036 -0.012 -7.354 -3.419 1.880 -4.187 -2.544 D 34 32 3 35 3 0 0 49 67 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 42 - U - - MR 36 35 3 38 3 1 2 50 68 -9.036 -0.012 -7.354 -2.842 -2.618 -3.619 1.855 D 37 35 3 38 3 0 0 48 66 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 41 - U - - MR 39 38 3 41 3 1 1 49 67 -9.036 -0.099 -3.953 -2.842 -2.618 -3.619 1.855 D 40 38 3 41 3 0 0 47 65 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 40 - U - - MR 42 41 3 44 3 1 2 48 66 -8.949 -0.012 -7.267 -2.677 -2.478 -3.450 1.837 D 43 41 3 44 3 0 0 46 64 -7.223 -2.400 -0.315 IR 44 44 3 44 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 39 - U - - MR 45 44 3 47 5 1 1 47 65 -7.656 -0.026 -7.471 -7.683 -8.575 -2.677 -2.478 -3.450 1.837 D 46 44 3 47 5 0 0 46 64 -5.876 -0.453 -3.502 -4.933 -2.928 IR 47 47 3 47 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 5 38 a u - - MP 48 47 3 52 6 2 2 46 64 -9.447 -9.386 -0.069 -8.163 -8.443 -4.732 -4.077 -2.891 -4.129 2.415 -5.138 -5.355 -0.643 -4.422 -4.063 2.142 -4.565 2.092 -0.855 -4.467 -2.565 -2.950 ML 49 47 3 52 6 1 1 45 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 46 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 6 37 G C - - MP 54 53 6 58 6 2 2 44 62 -9.395 -9.334 -0.017 -8.111 -8.391 -8.786 -4.813 -3.187 -4.851 0.217 -5.873 -4.998 -1.044 -5.277 -4.554 3.509 -4.898 1.000 -1.306 -4.600 -3.069 -3.724 ML 55 53 6 58 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 41 59 -9.864 -8.562 -1.058 -5.041 -5.059 -1.134 IL 58 58 5 58 6 1 1 44 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 7 36 G C - - MP 60 59 6 64 6 2 2 42 60 -9.447 -9.386 -0.017 -8.163 -8.443 -8.838 -6.103 -3.768 -6.483 -0.777 -7.099 -5.195 -2.129 -6.717 -5.115 3.845 -5.379 -1.549 -2.491 -5.327 -4.266 -5.342 ML 61 59 6 64 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 38 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 42 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 8 35 C G - - MP 66 65 6 70 6 2 2 40 58 -9.447 -9.386 -0.017 -8.163 -8.443 -8.838 -5.026 -5.074 -4.622 -1.209 -3.177 -4.957 3.505 -4.018 -4.663 -1.069 -4.911 -3.094 0.331 -5.021 0.898 -3.472 ML 67 65 6 70 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 36 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 40 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 9 34 U G - - MP 72 71 6 76 6 2 2 38 56 -9.447 -9.386 -0.017 -8.163 -8.443 -8.838 -5.043 -5.127 -4.618 -1.369 -3.183 -4.931 1.128 -4.026 -4.677 -1.262 -4.909 -3.244 1.867 -5.036 3.131 -3.509 ML 73 71 6 76 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 34 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 38 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 10 33 U G - - MP 78 77 6 82 6 2 2 36 54 -9.447 -9.386 -0.017 -8.163 -8.443 -8.838 -5.225 -5.328 -4.721 -1.566 -3.217 -4.982 1.088 -4.081 -4.790 -1.480 -4.987 -3.470 1.333 -5.177 3.337 -3.613 ML 79 77 6 82 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 32 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 11 32 C G - - MP 84 83 6 88 6 2 2 34 52 -9.447 -9.386 -0.017 -8.163 -8.443 -8.838 -6.147 -6.187 -5.541 -2.357 -4.002 -5.742 3.847 -4.982 -5.697 -2.266 -5.731 -4.217 -0.712 -6.105 -1.802 -4.502 ML 85 83 6 88 6 1 1 33 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 12 31 C G - - MP 90 89 6 94 4 2 2 32 50 -7.710 -2.240 -0.375 -6.331 -6.147 -6.187 -5.541 -2.357 -4.002 -5.742 3.847 -4.982 -5.697 -2.266 -5.731 -4.217 -0.712 -6.105 -1.802 -4.502 ML 91 89 6 94 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 31 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 30 48 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 31 49 -2.256 -0.399 -4.956 0.000 0.000 0.000 0.000 [ MATL 24 ] 13 - A - - - ML 96 95 6 98 3 1 1 29 47 -8.683 -0.012 -7.337 1.054 -2.165 0.465 -1.637 D 97 95 6 98 3 0 0 28 47 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 14 - C - - - ML 99 98 3 101 3 1 1 28 46 -9.036 -0.144 -3.423 -1.845 1.434 -2.754 -0.198 D 100 98 3 101 3 0 0 27 45 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 29 - u - - MR 102 101 3 104 5 1 1 27 45 -7.613 -0.027 -7.428 -7.640 -8.532 -0.718 0.479 -0.927 0.558 D 103 101 3 104 5 0 0 26 44 -6.077 -0.385 -3.703 -5.134 -3.129 IR 104 104 3 104 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 15 28 G U - - MP 105 104 3 109 6 2 2 26 44 -9.447 -9.386 -0.076 -8.163 -4.560 -8.838 -4.434 -3.074 -4.650 1.534 -6.297 -6.914 -1.761 -4.672 -4.202 0.311 -4.794 3.425 -1.891 -5.689 -3.660 -3.259 ML 106 104 3 109 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 27 A U - - MP 111 110 6 115 6 2 2 24 42 -9.389 -9.328 -0.017 -8.105 -8.385 -8.780 -4.169 -2.980 -4.308 3.175 -5.503 -6.257 -1.141 -4.433 -4.032 0.719 -4.641 1.916 -1.298 -5.084 -3.020 -3.025 ML 112 110 6 115 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 23 41 -7.646 -6.375 -0.807 -6.353 -1.487 -4.566 -0.313 -0.573 -0.947 1.003 D 114 110 6 115 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 17 26 C G - - MP 117 116 6 121 6 2 2 22 40 -9.447 -9.386 -0.017 -8.163 -8.443 -8.838 -6.147 -6.187 -5.541 -2.357 -4.002 -5.742 3.847 -4.982 -5.697 -2.266 -5.731 -4.217 -0.712 -6.105 -1.802 -4.502 ML 118 116 6 121 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 18 25 G C - - MP 123 122 6 127 4 2 2 20 38 -7.710 -2.371 -0.341 -6.331 -4.918 -3.270 -4.925 0.047 -5.669 -4.795 -0.919 -5.442 -4.664 3.612 -4.936 -1.011 -1.223 -0.386 -2.936 -3.892 ML 124 122 6 127 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 18 36 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 20 38 -1.515 -1.823 -1.444 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - G - - - ML 129 128 6 131 3 1 1 16 34 -8.395 -0.015 -7.050 -2.462 -3.798 1.862 -3.177 D 130 128 6 131 3 0 0 15 33 -8.083 -0.293 -2.474 IL 131 131 3 131 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - C - - - ML 132 131 3 134 3 1 1 14 33 -8.683 -0.012 -7.337 -2.139 1.584 -3.034 -0.617 D 133 131 3 134 3 0 0 15 33 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 21 - a - - - ML 135 134 3 137 3 1 1 13 31 -8.683 -0.012 -7.337 0.639 -1.386 0.348 -0.346 D 136 134 3 137 3 0 0 13 32 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - A - - - ML 138 137 3 140 2 1 1 1 1 * 0.000 1.580 -2.045 -2.076 -0.911 D 139 137 3 140 2 0 0 0 0 * 0.000 IL 140 140 3 140 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 141 140 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ctRNA_p42d ACC RF00489 DESC ctRNA LENG 46 MAXL 117 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 19:10:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00489/CM NSEQ 10 EFFN 5.346680 CKSUM 420918927 STATS LOCAL MSV -7.1330 0.71967 STATS LOCAL VITERBI -8.0097 0.71967 STATS LOCAL FORWARD -3.6342 0.71967 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.85743 1.40930 1.20531 1.20393 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 0.00000 * 1 0.05247 4.26986 3.91211 4.06659 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 2 3.68195 4.66499 0.05092 4.19645 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.09200 4.43154 2.57699 1.46634 0.26236 1.09861 0.40547 3 0.27228 3.19553 1.93780 2.93006 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36528 4.36528 1.46634 0.26236 2.12690 0.12693 4 0.35186 3.10317 1.65359 2.80754 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36528 4.36528 1.46634 0.26236 0.27235 1.43375 5 1.01452 3.28215 0.59211 3.06361 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.09823 4.43154 2.50510 1.46634 0.26236 1.09861 0.40547 6 2.59823 3.50881 0.14981 3.35830 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.02591 4.35921 4.35921 1.46634 0.26236 0.25567 1.48897 7 3.26388 4.19997 0.07158 4.14516 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 8 3.54095 0.29528 3.37951 1.64699 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 9 3.64934 2.05760 3.51670 0.20269 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 10 3.74261 2.08165 3.62567 0.19243 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 11 4.27353 0.08019 4.18424 3.03875 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 12 4.27574 0.08011 4.18557 3.03921 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 13 0.62532 3.08853 1.03603 2.74138 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 14 2.84974 0.35507 3.49494 1.55748 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 15 1.67675 3.95149 0.26498 3.62786 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.10713 4.43154 2.41133 1.46634 0.26236 1.09861 0.40547 16 0.50169 3.66286 1.09488 3.37388 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.02614 4.35054 4.35054 1.46634 0.26236 0.23527 1.56234 17 4.25709 0.08078 4.17428 3.03534 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 18 2.76755 3.50442 0.19565 2.46722 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.24104 4.43154 1.59802 1.46634 0.26236 1.09861 0.40547 19 3.33349 4.28344 0.07354 3.84277 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02983 4.22032 4.22032 1.46634 0.26236 0.11119 2.25157 20 3.07217 0.25414 3.70002 1.87488 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 21 0.92765 2.43726 1.11659 1.66218 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 22 0.25916 2.95166 2.98905 2.07376 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.24104 1.59802 4.43154 0.47024 0.98043 1.09861 0.40547 23 3.54040 0.16311 3.30458 2.46765 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 24 3.22239 4.18984 0.07792 3.91424 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 25 3.38291 2.36584 3.35946 0.17742 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 26 3.84570 2.63033 3.76180 0.12405 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.12714 4.43154 2.23035 1.46634 0.26236 1.09861 0.40547 27 1.97225 1.01455 2.05566 0.99349 29 u - - - 1.38629 1.38629 1.38629 1.38629 0.29742 1.41012 4.33106 0.10449 2.31049 0.19995 1.70799 28 3.31134 4.34022 0.06881 4.07484 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 29 3.31085 4.33937 0.06886 4.07393 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 30 1.81260 3.77560 0.24377 3.50059 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 31 1.43160 3.66947 0.35297 3.41170 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 32 2.55569 3.53515 0.15486 3.30585 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 33 4.28202 0.08646 4.07744 2.95524 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.09823 4.43154 2.50510 1.46634 0.26236 1.09861 0.40547 34 3.58602 0.30535 3.34020 1.60946 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02591 4.35921 4.35921 1.46634 0.26236 0.25567 1.48897 35 3.30800 1.29825 3.09084 0.43860 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.09200 4.43154 2.57699 1.46634 0.26236 1.09861 0.40547 36 3.49325 3.31905 4.03403 0.08806 39 U - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36528 4.36528 1.46634 0.26236 2.12690 0.12693 37 3.49325 3.31905 4.03403 0.08806 40 U - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36528 4.36528 1.46634 0.26236 0.27235 1.43375 38 3.60744 3.41830 4.15016 0.07867 41 U - - : 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 39 3.60744 3.41830 4.15016 0.07867 42 U - - : 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 40 4.03013 0.06402 4.52655 3.39835 43 C - - : 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 41 3.60744 3.41830 4.15016 0.07867 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 42 3.60744 3.41830 4.15016 0.07867 45 U - - : 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 43 3.60744 3.41830 4.15016 0.07867 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 44 3.60744 3.41830 4.15016 0.07867 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 45 3.68195 4.66499 0.05092 4.19645 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.02408 4.43154 4.43154 1.46634 0.26236 1.09861 0.40547 46 3.18077 0.21765 3.79563 2.02819 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.01211 4.41957 * 1.46634 0.26236 0.00000 * //