INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORND104 ACC RF00289 DESC Small nucleolar RNA SNORD104 STATES 214 NODES 70 CLEN 70 W 87 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 13:20:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00289/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 18 EFFN 2.280762 CKSUM 3769047136 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.10 NC 39.90 EFP7GF -8.9160 0.71875 ECMLC 0.71344 -6.88505 1.64961 1600000 529181 0.002268 ECMGC 0.44592 -18.24774 -5.83994 1600000 101149 0.003955 ECMLI 0.70792 -4.86527 3.26993 1600000 380469 0.003154 ECMGI 0.48507 -12.76205 -1.94834 1600000 75876 0.005272 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 87 108 -9.161 -9.101 -0.020 -7.877 -8.157 -8.552 IL 1 1 2 1 6 1 26 89 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 26 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 72 G C - - MP 3 2 3 7 6 2 27 87 108 -9.161 -9.101 -0.020 -7.877 -8.157 -8.552 -4.495 -2.959 -4.551 0.425 -5.266 -4.682 -0.581 -4.921 -4.246 3.543 -4.599 0.098 -0.874 -4.297 -2.599 -3.442 ML 4 2 3 7 6 1 24 86 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 22 86 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 20 84 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 25 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 25 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 71 C G - - MP 9 8 6 13 4 2 25 85 106 -7.085 -7.292 -0.048 -5.706 -4.831 -4.762 -4.473 -0.970 -3.132 -4.848 3.629 -3.970 -4.533 -0.767 -4.762 -2.714 0.352 -4.882 -0.846 -3.363 ML 10 8 6 13 4 1 23 85 106 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 4 1 21 85 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 12 8 6 13 4 0 19 84 104 -4.568 -4.250 -2.265 -0.520 IL 13 13 5 13 4 1 24 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 14 14 6 14 3 1 24 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 15 14 6 17 3 1 24 83 103 -8.092 -0.019 -6.746 0.162 -0.348 0.047 0.088 D 16 14 6 17 3 0 19 81 102 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 23 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 18 17 3 20 3 1 23 82 102 -8.092 -0.019 -6.746 -0.561 -2.176 1.470 -1.594 D 19 17 3 20 3 0 18 80 101 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 22 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 21 20 3 23 3 1 22 81 101 -8.092 -0.019 -6.746 -1.726 -1.681 -2.471 1.680 D 22 20 3 23 3 0 17 79 100 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 21 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 24 23 3 26 3 1 21 80 100 -8.092 -0.019 -6.746 -1.852 -3.113 1.778 -2.500 D 25 23 3 26 3 0 16 78 99 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 21 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 27 26 3 29 3 1 20 79 99 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 28 26 3 29 3 0 15 77 98 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 20 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 30 29 3 32 3 1 20 78 98 -8.092 -0.019 -6.746 -1.726 -1.681 -2.471 1.680 D 31 29 3 32 3 0 15 76 97 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 19 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 33 32 3 35 3 1 19 77 97 -8.092 -0.019 -6.746 -1.852 -3.113 1.778 -2.500 D 34 32 3 35 3 0 14 75 96 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 18 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 36 35 3 38 3 1 18 76 96 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 37 35 3 38 3 0 13 74 95 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 17 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 39 38 3 41 3 1 17 75 95 -8.092 -0.019 -6.746 -2.055 1.699 -2.886 -1.406 D 40 38 3 41 3 0 13 73 94 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - a - - - ML 42 41 3 44 3 1 16 74 94 -8.092 -0.019 -6.746 0.912 -0.804 -1.099 0.109 D 43 41 3 44 3 0 12 72 92 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 45 44 3 47 3 1 15 73 93 -8.092 -0.074 -4.435 -0.566 -0.527 -0.803 1.041 D 46 44 3 47 3 0 11 71 91 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 15 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - u - - - ML 48 47 3 50 3 1 15 72 92 -8.038 -0.020 -6.692 -0.337 0.131 -1.019 0.696 D 49 47 3 50 3 0 10 70 90 -6.631 -1.006 -1.023 IL 50 50 3 50 3 1 14 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 51 50 3 53 3 1 14 71 91 -8.092 -0.082 -4.285 -2.055 1.699 -2.886 -1.406 D 52 50 3 53 3 0 9 69 89 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 54 53 3 56 3 1 14 70 90 -8.030 -0.020 -6.684 -0.835 1.272 -1.829 -0.428 D 55 53 3 56 3 0 8 68 88 -6.684 -2.197 -0.373 IL 56 56 3 56 3 1 13 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 57 56 3 59 3 1 13 69 89 -8.030 -0.020 -6.684 1.466 -1.602 -1.518 -0.837 D 58 56 3 59 3 0 8 67 87 -6.684 -2.197 -0.373 IL 59 59 3 59 3 1 12 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - a - - - ML 60 59 3 62 3 1 12 68 88 -8.030 -0.020 -6.684 0.973 -1.011 -0.823 -0.035 D 61 59 3 62 3 0 7 66 86 -6.684 -0.955 -1.076 IL 62 62 3 62 3 1 11 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - u - - - ML 63 62 3 65 3 1 11 66 86 -8.092 -0.019 -6.746 0.336 -0.830 -0.732 0.654 D 64 62 3 65 3 0 6 65 85 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 10 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - u - - - ML 66 65 3 68 3 1 10 65 85 -5.001 -0.060 -6.746 -0.081 -0.067 -1.189 0.732 D 67 65 3 68 3 0 5 64 84 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 10 67 87 -1.539 -0.730 -4.239 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - A - - - ML 69 68 3 71 3 1 10 64 84 -8.092 -0.089 -4.151 1.351 -0.889 -1.393 -0.920 D 70 68 3 71 3 0 5 63 83 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - A - - - ML 72 71 3 74 3 1 10 63 83 -8.023 -0.020 -6.677 1.272 -1.343 -0.851 -0.650 D 73 71 3 74 3 0 4 61 81 -6.735 -2.248 -0.358 IL 74 74 3 74 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - A - - - ML 75 74 3 77 3 1 9 62 82 -4.835 -0.066 -6.677 1.743 -2.490 -2.110 -2.044 D 76 74 3 77 3 0 3 60 80 -6.735 -2.248 -0.358 IL 77 77 3 77 3 1 8 63 83 -1.547 -0.725 -4.247 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - G - - - ML 78 77 3 80 3 1 9 61 81 -8.023 -0.020 -6.677 -1.705 -2.945 1.751 -2.332 D 79 77 3 80 3 0 3 59 79 -6.735 -2.248 -0.358 IL 80 80 3 80 3 1 8 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - C - - - ML 81 80 3 83 3 1 8 60 80 -8.023 -0.020 -6.677 -1.884 1.661 -2.712 -1.269 D 82 80 3 83 3 0 3 58 78 -6.735 -0.909 -1.126 IL 83 83 3 83 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - A - - - ML 84 83 3 86 3 1 7 59 79 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 85 83 3 86 3 0 1 57 77 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - C - - - ML 87 86 3 89 3 1 7 58 77 -8.092 -0.019 -6.746 -1.496 1.482 -2.333 -0.614 D 88 86 3 89 3 0 0 56 76 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - G - - - ML 90 89 3 92 3 1 6 57 76 -8.092 -0.019 -6.746 -1.852 -3.113 1.778 -2.500 D 91 89 3 92 3 0 0 55 75 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 5 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - U - - - ML 93 92 3 95 3 1 6 56 75 -8.092 -0.019 -6.746 -1.106 -0.643 -1.849 1.388 D 94 92 3 95 3 0 0 54 74 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - G - - - ML 96 95 3 98 3 1 5 55 74 -8.092 -0.019 -6.746 -1.852 -3.113 1.778 -2.500 D 97 95 3 98 3 0 0 53 73 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - U - - - ML 99 98 3 101 3 1 4 54 73 -8.092 -0.019 -6.746 -1.726 -1.681 -2.471 1.680 D 100 98 3 101 3 0 0 52 72 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 3 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - U - - - ML 102 101 3 104 3 1 4 52 72 -8.092 -0.019 -6.746 -1.726 -1.681 -2.471 1.680 D 103 101 3 104 3 0 0 51 71 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - A - - - ML 105 104 3 107 3 1 3 51 71 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 106 104 3 107 3 0 0 50 70 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - G - - - ML 108 107 3 110 3 1 3 50 70 -8.092 -0.019 -6.746 -1.852 -3.113 1.778 -2.500 D 109 107 3 110 3 0 0 49 69 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - A - - - ML 111 110 3 113 3 1 2 49 69 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 112 110 3 113 3 0 0 48 68 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - C - - - ML 114 113 3 116 3 1 2 48 68 -8.092 -0.019 -6.746 -2.055 1.699 -2.886 -1.406 D 115 113 3 116 3 0 0 47 67 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - - - ML 117 116 3 119 3 1 2 47 67 -8.092 -0.019 -6.746 -1.726 -1.681 -2.471 1.680 D 118 116 3 119 3 0 0 46 65 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - G - - - ML 120 119 3 122 3 1 1 46 66 -8.092 -0.019 -6.746 -1.347 -2.395 1.621 -1.553 D 121 119 3 122 3 0 0 45 64 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - - - ML 123 122 3 125 3 1 1 45 65 -8.092 -0.019 -6.746 -2.055 1.699 -2.886 -1.406 D 124 122 3 125 3 0 0 44 63 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - U - - - ML 126 125 3 128 3 1 1 44 63 -8.092 -0.019 -6.746 -1.726 -1.681 -2.471 1.680 D 127 125 3 128 3 0 0 43 62 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - G - - - ML 129 128 3 131 3 1 1 43 62 -8.092 -0.019 -6.746 -1.852 -3.113 1.778 -2.500 D 130 128 3 131 3 0 0 42 61 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - A - - - ML 132 131 3 134 3 1 1 42 61 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 133 131 3 134 3 0 0 41 60 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - c - - - ML 135 134 3 137 3 1 1 41 60 -8.092 -0.019 -6.746 -0.439 0.584 -1.386 0.465 D 136 134 3 137 3 0 0 40 59 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - g - - - ML 138 137 3 140 3 1 1 40 59 -8.092 -0.019 -6.746 -0.154 -0.640 0.845 -0.591 D 139 137 3 140 3 0 0 38 58 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - C - - - ML 141 140 3 143 3 1 1 39 58 -8.092 -0.019 -6.746 -0.560 1.252 -1.806 -0.615 D 142 140 3 143 3 0 0 37 57 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - G - - - ML 144 143 3 146 3 1 1 38 57 -8.092 -0.019 -6.746 -1.066 -2.002 1.477 -1.034 D 145 143 3 146 3 0 0 36 56 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - G - - - ML 147 146 3 149 3 1 1 37 56 -8.092 -0.019 -6.746 -0.830 -2.368 1.562 -1.783 D 148 146 3 149 3 0 0 35 55 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - G - - - ML 150 149 3 152 3 1 1 35 55 -8.092 -0.019 -6.746 -0.830 -2.368 1.562 -1.783 D 151 149 3 152 3 0 0 34 54 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - U - - - ML 153 152 3 155 3 1 1 34 54 -8.092 -0.019 -6.746 -1.726 -1.681 -2.471 1.680 D 154 152 3 155 3 0 0 33 52 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - G - - - ML 156 155 3 158 3 1 1 33 52 -8.092 -0.019 -6.746 -1.852 -3.113 1.778 -2.500 D 157 155 3 158 3 0 0 32 51 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - A - - - ML 159 158 3 161 3 1 1 32 51 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 160 158 3 161 3 0 0 31 50 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - U - - - ML 162 161 3 164 3 1 1 31 50 -8.092 -0.019 -6.746 -1.726 -1.681 -2.471 1.680 D 163 161 3 164 3 0 0 30 49 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - G - - - ML 165 164 3 167 3 1 1 30 49 -8.092 -0.019 -6.746 -1.852 -3.113 1.778 -2.500 D 166 164 3 167 3 0 0 29 48 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - C - - - ML 168 167 3 170 3 1 1 29 48 -8.092 -0.019 -6.746 -1.111 1.472 -2.176 -0.884 D 169 167 3 170 3 0 0 28 47 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - G - - - ML 171 170 3 173 3 1 1 28 47 -8.092 -0.019 -6.746 -0.703 -0.968 1.243 -0.978 D 172 170 3 173 3 0 0 27 46 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - A - - - ML 174 173 3 176 3 1 1 27 46 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 175 173 3 176 3 0 0 26 45 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - A - - - ML 177 176 3 179 3 1 1 26 45 -8.092 -0.019 -6.746 1.312 -0.794 -1.359 -0.861 D 178 176 3 179 3 0 0 25 44 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - c - - - ML 180 179 3 182 3 1 1 25 43 -8.092 -0.019 -6.746 -0.948 0.988 -1.770 0.269 D 181 179 3 182 3 0 0 24 42 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - U - - - ML 183 182 3 185 3 1 1 23 42 -8.092 -0.019 -6.746 -0.580 -0.302 -1.457 1.108 D 184 182 3 185 3 0 0 22 41 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - g - - - ML 186 185 3 188 3 1 1 22 41 -8.092 -0.019 -6.746 0.092 -0.741 0.729 -0.560 D 187 185 3 188 3 0 0 21 40 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - g - - - ML 189 188 3 191 3 1 1 21 40 -8.092 -0.019 -6.746 -0.080 -0.317 0.387 -0.084 D 190 188 3 191 3 0 0 20 39 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - A - - - ML 192 191 3 194 3 1 1 20 39 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 193 191 3 194 3 0 0 19 38 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 65 - g - - - ML 195 194 3 197 3 1 1 19 37 -8.092 -0.019 -6.746 0.013 -1.159 0.976 -0.797 D 196 194 3 197 3 0 0 18 37 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - U - - - ML 198 197 3 200 3 1 1 17 36 -8.092 -0.019 -6.746 -0.806 -1.187 -1.766 1.430 D 199 197 3 200 3 0 0 17 36 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - C - - - ML 201 200 3 203 3 1 1 16 35 -8.092 -0.019 -6.746 -2.055 1.699 -2.886 -1.406 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - U - - - ML 204 203 3 206 3 1 1 15 33 -8.092 -0.019 -6.746 -1.726 -1.681 -2.471 1.680 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - G - - - ML 207 206 3 209 3 1 1 13 31 -8.092 -0.019 -6.746 -1.852 -3.113 1.778 -2.500 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 70 - A - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 1.769 -2.631 -2.237 -2.199 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORND104 ACC RF00289 DESC Small nucleolar RNA SNORD104 LENG 70 MAXL 154 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 13:20:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00289/CM NSEQ 18 EFFN 2.351074 CKSUM 3769047136 STATS LOCAL MSV -8.8269 0.71875 STATS LOCAL VITERBI -9.1160 0.71875 STATS LOCAL FORWARD -3.5575 0.71875 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30715 1.55182 1.28134 1.42760 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 0.00000 * 1 2.33534 3.05320 0.21920 2.94016 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 2 3.22587 0.23646 2.98800 2.11630 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 3 1.27555 1.62766 1.35044 1.32725 3 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 4 1.78677 2.91884 0.35988 2.51643 4 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 5 2.61449 2.57768 3.13208 0.21416 5 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 6 2.70531 3.58388 0.14742 3.15938 6 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 7 0.15413 3.24414 2.96774 2.94850 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 8 2.61449 2.57768 3.13208 0.21416 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 9 2.70531 3.58388 0.14742 3.15938 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 10 0.15413 3.24414 2.96774 2.94850 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 11 2.85222 0.20020 3.42829 2.39385 11 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 12 0.74904 1.94896 2.15727 1.31262 12 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 13 1.78903 1.75590 1.94693 0.65891 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.07991 3.98639 2.84332 1.46634 0.26236 1.09861 0.40547 14 1.62593 1.29136 2.09896 0.90192 14 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03943 3.94592 3.94592 1.46634 0.26236 0.49328 0.94320 15 2.85222 0.20020 3.42829 2.39385 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.08583 3.98639 2.75387 1.46634 0.26236 1.09861 0.40547 16 1.98155 0.49468 2.67610 1.69529 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03966 3.94023 3.94023 1.46634 0.26236 1.69192 0.20354 17 0.36384 2.51319 2.45609 1.97894 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03966 3.94023 3.94023 1.46634 0.26236 1.69192 0.20354 18 0.70717 2.09507 1.96265 1.41299 18 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03966 3.94023 3.94023 1.46634 0.26236 0.45939 0.99877 19 1.15207 1.96866 1.89717 0.93043 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 20 1.44507 1.43072 2.21864 0.87617 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06908 3.03272 3.98639 0.64766 0.74080 1.09861 0.40547 21 0.44309 2.00752 2.36774 2.04070 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09170 3.98639 2.67280 1.46634 0.26236 1.09861 0.40547 22 0.49925 2.32871 1.98279 1.84574 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03989 3.93458 3.93458 1.46634 0.26236 1.74388 0.19218 23 0.17169 3.14499 2.87838 2.83923 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07553 2.93386 3.93458 0.62164 0.77017 1.74388 0.19218 24 2.60260 3.46663 0.16610 3.04207 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03989 3.93458 3.93458 1.46634 0.26236 1.74388 0.19218 25 2.73197 0.22596 3.30649 2.29747 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03989 3.93458 3.93458 1.46634 0.26236 0.43029 1.05074 26 0.15413 3.24414 2.96774 2.94850 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 27 2.45189 0.34969 3.03357 1.82748 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 28 2.70531 3.58388 0.14742 3.15938 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 29 2.17271 1.83896 2.68812 0.41682 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 30 2.70531 3.58388 0.14742 3.15938 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 31 2.61449 2.57768 3.13208 0.21416 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 32 2.61449 2.57768 3.13208 0.21416 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 33 0.15413 3.24414 2.96774 2.94850 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 34 2.70531 3.58388 0.14742 3.15938 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 35 0.15413 3.24414 2.96774 2.94850 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 36 2.85222 0.20020 3.42829 2.39385 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 37 2.61449 2.57768 3.13208 0.21416 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 38 2.34600 3.07465 0.25524 2.48513 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 39 2.85222 0.20020 3.42829 2.39385 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 40 2.61449 2.57768 3.13208 0.21416 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 41 2.70531 3.58388 0.14742 3.15938 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 42 0.15413 3.24414 2.96774 2.94850 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 43 1.69841 0.97465 2.35910 1.06364 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 44 1.50050 1.83272 0.79159 1.80863 46 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 45 1.78678 0.50745 2.66127 1.82875 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 46 2.14714 2.79768 0.35382 2.11839 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 47 1.97709 3.05434 0.29603 2.65057 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 48 1.97709 3.05435 0.29603 2.65057 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 49 2.61449 2.57768 3.13208 0.21416 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 50 2.70531 3.58388 0.14742 3.15938 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 51 0.15413 3.24414 2.96774 2.94850 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 52 2.61449 2.57768 3.13208 0.21416 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 53 2.70531 3.58388 0.14742 3.15938 55 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 54 2.17904 0.35561 2.92443 2.02186 56 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 55 1.89118 2.06375 0.51456 2.08451 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 56 0.15413 3.24414 2.96774 2.94850 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 57 0.46996 1.94043 2.34407 1.99958 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 58 2.06072 0.69290 2.63233 1.20196 60 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 59 1.79875 1.59749 2.40986 0.61201 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 60 1.32642 1.90349 0.87263 1.78572 62 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 61 1.44649 1.60564 1.11166 1.44888 63 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 62 0.15413 3.24414 2.96774 2.94850 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 63 1.38221 2.19773 0.70116 1.95256 65 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 64 1.95969 2.22557 2.63091 0.38702 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 65 2.85222 0.20020 3.42829 2.39385 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 66 2.61449 2.57768 3.13208 0.21416 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 67 2.70531 3.58388 0.14742 3.15938 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 68 0.15413 3.24414 2.96774 2.94850 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 69 2.40001 3.15796 0.20356 2.97694 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 70 3.17668 0.29508 2.87628 1.84857 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.01910 3.96765 * 1.46634 0.26236 0.00000 * //