INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD50 ACC RF00278 DESC Small nucleolar RNA SNORD50 STATES 220 NODES 71 CLEN 72 W 90 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 09:54:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00278/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 2.624756 CKSUM 829670160 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.00 NC 41.90 EFP7GF -8.1480 0.71877 ECMLC 0.65625 -5.86738 2.88379 1600000 374394 0.003205 ECMGC 0.43409 -16.21987 -3.50583 1600000 99763 0.004010 ECMLI 0.63168 -4.10430 4.57952 1600000 289384 0.004147 ECMGI 0.43673 -11.42443 0.37936 1600000 69320 0.005770 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 90 110 -7.208 -7.415 -0.071 -4.809 IL 1 1 2 1 4 1 29 94 114 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 28 93 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 5 1 29 90 110 -7.286 -0.077 -7.101 -4.830 -8.205 0.437 -0.715 -0.482 0.402 D 4 2 3 5 5 0 22 89 109 -5.103 -0.947 -4.364 -2.739 -1.978 IL 5 5 3 5 5 1 27 90 111 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 78 A U - - MP 6 5 3 10 6 2 29 89 110 -9.180 -9.119 -0.020 -7.896 -8.176 -8.571 -3.341 -1.163 -3.427 3.001 -3.927 -4.587 0.128 -3.676 -3.399 1.497 -3.936 0.659 -0.097 -3.752 -1.687 -2.366 ML 7 5 3 10 6 1 24 88 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 23 88 108 -7.226 -5.955 -1.228 -5.933 -1.067 -4.146 0.795 -0.683 -0.404 -0.173 D 9 5 3 10 6 0 20 86 106 -9.238 -7.936 -2.337 -4.415 -4.433 -0.508 IL 10 10 5 10 6 1 26 89 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 26 88 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 77 U A - - MP 12 11 6 16 6 2 27 87 108 -9.212 -9.152 -0.020 -7.928 -8.208 -8.603 -3.525 -3.561 -3.607 -0.069 -2.145 -4.376 1.149 -3.569 -3.616 0.065 -4.129 -1.738 3.268 -3.780 -0.467 -1.742 ML 13 11 6 16 6 1 23 86 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 22 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 19 84 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 25 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 24 86 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 76 C G - - MP 18 17 6 22 4 2 25 85 105 -7.208 -7.415 -0.044 -5.829 -4.431 -4.420 -4.139 -0.613 -2.833 -4.557 3.431 -3.637 -4.174 -0.420 -4.465 -2.418 0.730 -4.488 0.361 -3.006 ML 19 17 6 22 4 1 22 85 106 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 20 85 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 18 84 104 -4.568 -4.250 -2.265 -0.520 IL 22 22 5 22 4 1 24 86 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 23 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 24 23 6 26 3 1 24 83 103 -8.207 -0.017 -6.861 0.289 -0.602 -1.156 0.740 D 25 23 6 26 3 0 18 81 102 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 23 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 27 26 3 29 3 1 23 82 102 -8.207 -0.017 -6.861 1.051 -1.349 -0.162 -0.640 D 28 26 3 29 3 0 17 80 101 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 22 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 30 29 3 32 3 1 22 81 101 -8.207 -0.017 -6.861 -1.946 -1.863 -2.699 1.728 D 31 29 3 32 3 0 16 79 100 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 21 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 33 32 3 35 3 1 21 80 100 -8.207 -0.017 -6.861 -2.090 -3.383 1.817 -2.769 D 34 32 3 35 3 0 15 78 99 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 20 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 36 35 3 38 3 1 21 79 99 -8.207 -0.017 -6.861 1.806 -2.864 -2.448 -2.457 D 37 35 3 38 3 0 15 77 98 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 19 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 39 38 3 41 3 1 20 78 98 -8.207 -0.017 -6.861 -1.946 -1.863 -2.699 1.728 D 40 38 3 41 3 0 14 76 97 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 19 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 42 41 3 44 3 1 19 77 97 -8.207 -0.017 -6.861 -2.090 -3.383 1.817 -2.769 D 43 41 3 44 3 0 13 75 95 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 18 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 45 44 3 47 3 1 18 76 96 -8.207 -0.017 -6.861 1.806 -2.864 -2.448 -2.457 D 46 44 3 47 3 0 12 74 94 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 17 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - u - - - ML 48 47 3 50 3 1 18 75 95 -2.600 -0.275 -6.861 0.142 -0.887 -0.733 0.811 D 49 47 3 50 3 0 12 72 93 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 17 75 95 -1.972 -0.503 -4.672 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - C - - - ML 51 50 3 53 3 1 17 73 93 -8.207 -0.017 -6.861 -0.513 1.119 -1.713 -0.283 D 52 50 3 53 3 0 11 72 92 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 16 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - C - - - ML 54 53 3 56 3 1 16 72 92 -8.207 -0.017 -6.861 -0.682 1.015 -1.682 0.063 D 55 53 3 56 3 0 10 71 91 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 15 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 57 56 3 59 3 1 15 71 91 -8.207 -0.017 -6.861 -0.889 -1.297 -1.898 1.478 D 58 56 3 59 3 0 9 70 90 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 14 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - A - - - ML 60 59 3 62 3 1 15 70 90 -8.207 -0.017 -6.861 1.806 -2.864 -2.448 -2.457 D 61 59 3 62 3 0 9 69 89 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 13 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - U - - - ML 63 62 3 65 3 1 14 69 89 -8.207 -0.017 -6.861 -1.946 -1.863 -2.699 1.728 D 64 62 3 65 3 0 8 67 88 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 13 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - C - - - ML 66 65 3 68 3 1 13 68 88 -8.207 -0.017 -6.861 -2.338 1.752 -3.169 -1.634 D 67 65 3 68 3 0 7 66 87 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 12 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - C - - - ML 69 68 3 71 3 1 13 67 87 -8.207 -0.017 -6.861 -2.338 1.752 -3.169 -1.634 D 70 68 3 71 3 0 7 65 86 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 11 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - C - - - ML 72 71 3 74 3 1 12 66 86 -8.207 -0.017 -6.861 -1.103 1.492 -2.273 -0.955 D 73 71 3 74 3 0 6 64 85 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - G - - - ML 75 74 3 77 3 1 11 65 85 -8.207 -0.017 -6.861 -0.703 -2.385 1.541 -1.812 D 76 74 3 77 3 0 5 63 83 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 10 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - A - - - ML 78 77 3 80 3 1 11 64 84 -8.207 -0.017 -6.861 1.806 -2.864 -2.448 -2.457 D 79 77 3 80 3 0 5 62 82 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 81 80 3 83 3 1 10 63 83 -8.207 -0.017 -6.861 1.806 -2.864 -2.448 -2.457 D 82 80 3 83 3 0 4 61 81 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 8 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - c - - - ML 84 83 3 86 3 1 9 62 82 -8.207 -0.017 -6.861 -0.399 0.847 -0.712 -0.264 D 85 83 3 86 3 0 3 60 80 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 87 86 3 89 3 1 9 61 81 -8.207 -0.017 -6.861 -2.338 1.752 -3.169 -1.634 D 88 86 3 89 3 0 3 59 79 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 90 89 3 92 3 1 8 60 79 -8.207 -0.017 -6.861 -1.946 -1.863 -2.699 1.728 D 91 89 3 92 3 0 2 58 78 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - G - - - ML 93 92 3 95 3 1 7 59 78 -8.207 -0.017 -6.861 -2.090 -3.383 1.817 -2.769 D 94 92 3 95 3 0 1 57 77 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - - - ML 96 95 3 98 3 1 7 58 77 -8.207 -0.017 -6.861 1.806 -2.864 -2.448 -2.457 D 97 95 3 98 3 0 1 56 76 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 5 59 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - a - - - ML 99 98 3 101 3 1 6 57 76 -8.207 -0.017 -6.861 0.951 -0.829 -1.163 0.081 D 100 98 3 101 3 0 0 55 75 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 5 58 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - U - - - ML 102 101 3 104 3 1 5 56 75 -8.207 -0.017 -6.861 -0.526 -0.342 -1.486 1.111 D 103 101 3 104 3 0 0 54 74 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 4 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - u - - - ML 105 104 3 107 3 1 5 54 74 -3.253 -0.174 -6.861 0.150 -0.987 -1.314 0.988 D 106 104 3 107 3 0 0 52 72 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 3 55 75 -1.658 -0.738 -3.585 0.000 0.000 0.000 0.000 [ MATL 33 ] 36 - c - - - ML 108 107 3 110 3 1 4 53 73 -8.178 -0.018 -6.832 -0.561 0.592 -1.482 0.543 D 109 107 3 110 3 0 0 52 71 -6.457 -1.206 -0.849 IL 110 110 3 110 3 1 3 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 37 - C - - - ML 111 110 3 113 3 1 3 52 71 -8.207 -0.017 -6.861 -0.885 1.180 -1.854 -0.126 D 112 110 3 113 3 0 0 50 70 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - U - - - ML 114 113 3 116 3 1 2 51 70 -8.207 -0.017 -6.861 -1.946 -1.863 -2.699 1.728 D 115 113 3 116 3 0 0 49 69 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - G - - - ML 117 116 3 119 3 1 1 50 69 -8.207 -0.098 -4.001 -2.090 -3.383 1.817 -2.769 D 118 116 3 119 3 0 0 48 68 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - u - - - ML 120 119 3 122 3 1 3 49 68 -8.127 -0.018 -6.781 0.161 -0.703 -1.187 0.871 D 121 119 3 122 3 0 0 47 67 -6.842 -2.355 -0.329 IL 122 122 3 122 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - U - - - ML 123 122 3 125 3 1 2 48 67 -8.127 -0.018 -6.781 -0.519 -1.109 -1.618 1.329 D 124 122 3 125 3 0 0 46 65 -6.842 -2.355 -0.329 IL 125 125 3 125 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - G - - - ML 126 125 3 128 3 1 2 47 66 -2.884 -0.225 -6.781 -1.926 -3.196 1.791 -2.584 D 127 125 3 128 3 0 0 45 64 -6.842 -0.821 -1.234 IL 128 128 3 128 3 1 1 47 67 -1.740 -0.600 -4.618 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - A - - - ML 129 128 3 131 3 1 1 45 64 -8.207 -0.017 -6.861 1.806 -2.864 -2.448 -2.457 D 130 128 3 131 3 0 0 44 63 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - A - - - ML 132 131 3 134 3 1 1 44 63 -8.207 -0.017 -6.861 1.541 -2.009 -1.000 -1.546 D 133 131 3 134 3 0 0 43 62 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 47 - A - - - ML 135 134 3 137 3 1 1 43 62 -8.207 -0.017 -6.861 1.560 -2.044 -1.071 -1.586 D 136 134 3 137 3 0 0 42 61 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 48 - A - - - ML 138 137 3 140 3 1 1 42 61 -8.207 -0.050 -5.013 1.692 -2.370 -1.658 -1.949 D 139 137 3 140 3 0 0 40 60 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - A - - - ML 141 140 3 143 3 1 1 41 60 -8.175 -0.058 -4.805 1.352 -1.151 -1.417 -0.685 D 142 140 3 143 3 0 0 39 59 -6.490 -2.003 -0.436 IL 143 143 3 143 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - - - ML 144 143 3 146 3 1 1 40 59 -8.135 -0.018 -6.789 1.007 -0.328 -0.991 -0.532 D 145 143 3 146 3 0 0 38 58 -6.791 -2.304 -0.343 IL 146 146 3 146 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 51 - a - - - ML 147 146 3 149 3 1 1 39 58 -8.135 -0.018 -6.789 0.433 -0.061 -0.907 0.212 D 148 146 3 149 3 0 0 37 57 -6.791 -0.862 -1.182 IL 149 149 3 149 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 52 - a - - - ML 150 149 3 152 3 1 1 38 57 -8.207 -0.199 -2.993 0.446 -0.475 -0.214 0.078 D 151 149 3 152 3 0 0 36 56 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 53 - u - - - ML 153 152 3 155 3 1 1 37 56 -8.028 -0.051 -5.011 0.027 0.231 -0.940 0.363 D 154 152 3 155 3 0 0 35 54 -7.363 -2.876 -0.221 IL 155 155 3 155 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 54 - a - - - ML 156 155 3 158 3 1 1 36 55 -7.997 -0.020 -6.651 0.666 -0.530 -1.002 0.289 D 157 155 3 158 3 0 0 34 53 -7.488 -1.391 -0.706 IL 158 158 3 158 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 55 - u - - - ML 159 158 3 161 3 1 1 35 54 -8.091 -0.019 -6.745 0.280 -0.342 -0.858 0.531 D 160 158 3 161 3 0 0 33 52 -7.061 -1.841 -0.487 IL 161 161 3 161 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 56 - a - - - ML 162 161 3 164 3 1 1 33 53 -8.120 -0.018 -6.774 0.599 -0.722 -0.504 0.231 D 163 161 3 164 3 0 0 32 51 -6.891 -1.690 -0.553 IL 164 164 3 164 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 57 - U - - - ML 165 164 3 167 3 1 1 32 51 -8.147 -0.018 -6.801 -1.031 -1.315 -1.946 1.510 D 166 164 3 167 3 0 0 31 50 -6.704 -0.936 -1.096 IL 167 167 3 167 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 58 - A - - - ML 168 167 3 170 3 1 1 31 50 -5.574 -0.043 -6.861 1.664 -2.285 -1.515 -1.857 D 169 167 3 170 3 0 0 30 49 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 33 52 -1.510 -0.749 -4.210 0.000 0.000 0.000 0.000 [ MATL 54 ] 60 - C - - - ML 171 170 3 173 3 1 1 30 49 -8.207 -0.017 -6.861 -1.597 1.495 -2.446 -0.584 D 172 170 3 173 3 0 0 29 48 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 61 - G - - - ML 174 173 3 176 3 1 1 29 48 -8.207 -0.017 -6.861 -2.090 -3.383 1.817 -2.769 D 175 173 3 176 3 0 0 28 47 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 62 - G - - - ML 177 176 3 179 3 1 1 28 47 -8.207 -0.017 -6.861 -2.090 -3.383 1.817 -2.769 D 178 176 3 179 3 0 0 27 46 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 63 - A - - - ML 180 179 3 182 3 1 1 27 46 -8.207 -0.017 -6.861 1.806 -2.864 -2.448 -2.457 D 181 179 3 182 3 0 0 26 45 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 64 - U - - - ML 183 182 3 185 3 1 1 26 44 -8.207 -0.017 -6.861 -1.946 -1.863 -2.699 1.728 D 184 182 3 185 3 0 0 25 44 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 65 - C - - - ML 186 185 3 188 3 1 1 24 43 -8.207 -0.017 -6.861 -1.213 1.223 -2.059 -0.008 D 187 185 3 188 3 0 0 23 42 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 66 - U - - - ML 189 188 3 191 3 1 1 23 42 -8.207 -0.017 -6.861 -0.980 0.015 -1.751 1.128 D 190 188 3 191 3 0 0 22 41 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - G - - - ML 192 191 3 194 3 1 1 22 41 -8.207 -0.017 -6.861 -2.090 -3.383 1.817 -2.769 D 193 191 3 194 3 0 0 21 40 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - G - - - ML 195 194 3 197 3 1 1 21 40 -8.207 -0.017 -6.861 -1.084 -2.658 1.648 -2.081 D 196 194 3 197 3 0 0 20 39 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 69 - C - - - ML 198 197 3 200 3 1 1 20 38 -8.207 -0.017 -6.861 -2.338 1.752 -3.169 -1.634 D 199 197 3 200 3 0 0 19 38 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 70 - U - - - ML 201 200 3 203 3 1 1 19 37 -8.207 -0.017 -6.861 -0.705 -1.229 -1.786 1.417 D 202 200 3 203 3 0 0 18 37 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 71 - U - - - ML 204 203 3 206 3 1 1 17 36 -8.207 -0.017 -6.861 -1.073 -1.238 -1.393 1.444 D 205 203 3 206 3 0 0 17 36 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 72 - C - - - ML 207 206 3 209 3 1 1 16 35 -8.207 -0.017 -6.861 -2.338 1.752 -3.169 -1.634 D 208 206 3 209 3 0 0 16 34 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 73 - U - - - ML 210 209 3 212 3 1 1 15 33 -8.207 -0.017 -6.861 -1.946 -1.863 -2.699 1.728 D 211 209 3 212 3 0 0 15 33 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 74 - G - - - ML 213 212 3 215 3 1 1 13 31 -8.207 -0.017 -6.861 -2.090 -3.383 1.817 -2.769 D 214 212 3 215 3 0 0 13 32 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - A - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 1.806 -2.864 -2.448 -2.457 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD50 ACC RF00278 DESC Small nucleolar RNA SNORD50 LENG 72 MAXL 155 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 09:54:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00278/CM NSEQ 26 EFFN 2.789795 CKSUM 829670160 STATS LOCAL MSV -8.7859 0.71877 STATS LOCAL VITERBI -9.2560 0.71877 STATS LOCAL FORWARD -3.4828 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.21176 1.56800 1.52873 1.28354 1.38629 1.38629 1.38629 1.38629 0.05348 4.07927 3.34787 1.46634 0.26236 0.00000 * 1 1.08038 1.89106 1.72247 1.10564 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.07191 4.06086 2.95368 1.46634 0.26236 1.40560 0.28133 2 0.59166 2.57234 1.27654 2.39431 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03637 4.02532 4.02532 1.46634 0.26236 0.39700 1.11577 3 2.60715 1.87304 2.42339 0.37983 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 4 2.98493 0.36377 2.76798 1.65227 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 5 1.18372 1.81241 2.20408 0.86690 5 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 6 0.64803 2.34606 1.49696 1.84915 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 7 2.80432 2.73563 3.32883 0.17583 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 8 2.90839 3.81307 0.11704 3.38706 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 9 0.12422 3.44464 3.14903 3.16990 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 10 2.80432 2.73563 3.32883 0.17583 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 11 2.90839 3.81307 0.11704 3.38706 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 12 0.12422 3.44464 3.14903 3.16990 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 13 1.28846 2.01799 1.90025 0.81679 13 u - - _ 1.38629 1.38629 1.38629 1.38629 0.23230 1.65877 4.07927 0.16916 1.86031 1.09861 0.40547 14 1.76129 0.59281 2.61142 1.59961 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 15 1.88293 0.66627 2.58725 1.35088 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 16 2.03317 2.32240 2.74677 0.34686 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 17 0.12422 3.44464 3.14903 3.16990 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 18 2.80432 2.73563 3.32883 0.17583 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 19 3.09494 0.15755 3.66956 2.59027 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 20 3.09494 0.15755 3.66956 2.59027 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 21 2.19273 0.33314 3.02342 2.09491 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 22 1.89835 3.09111 0.30467 2.69759 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 23 0.12422 3.44464 3.14903 3.16990 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 24 0.12422 3.44464 3.14903 3.16990 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 25 1.68089 0.78252 1.88622 1.58525 26 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 26 3.09494 0.15755 3.66956 2.59027 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 27 2.80432 2.73563 3.32883 0.17583 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 28 2.90839 3.81307 0.11704 3.38706 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 29 0.12422 3.44464 3.14903 3.16990 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 30 0.71682 1.97319 2.21338 1.33426 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 31 1.76860 1.62689 2.44402 0.60499 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 32 1.28401 2.09343 2.32149 0.68978 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15405 2.07264 4.07927 0.25011 1.50831 1.09861 0.40547 33 1.79477 0.96200 2.44111 1.00884 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 34 2.03008 0.55117 2.71239 1.48711 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 35 2.80432 2.73563 3.32883 0.17583 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 36 2.90839 3.81307 0.11704 3.38706 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.09611 4.07927 2.59410 1.46634 0.26236 1.09861 0.40547 37 1.27521 1.88625 2.22688 0.77409 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03658 4.01973 4.01973 1.46634 0.26236 1.85875 0.16945 38 1.76566 2.18605 2.54447 0.44933 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03658 4.01973 4.01973 1.46634 0.26236 1.85875 0.16945 39 2.79297 3.68322 0.13334 3.25838 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.19609 1.83194 4.01973 0.31196 1.31682 0.37358 1.16560 40 0.12422 3.44464 3.14903 3.16990 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 41 0.30654 2.82336 2.09382 2.50850 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 42 0.29321 2.84835 2.14451 2.53741 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 43 0.20244 3.08312 2.56923 2.79923 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05958 4.07927 3.19605 1.46634 0.26236 1.09861 0.40547 44 0.43658 2.20038 2.39981 1.88214 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06578 4.05497 3.07196 1.46634 0.26236 1.48584 0.25659 45 0.67704 1.61234 2.09145 1.77813 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03636 4.02555 4.02555 1.46634 0.26236 1.80683 0.17933 46 1.08302 1.42383 2.02554 1.24231 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03636 4.02555 4.02555 1.46634 0.26236 0.39801 1.11369 47 1.07461 1.71734 1.53266 1.33535 52 a - - _ 1.38629 1.38629 1.38629 1.38629 0.17370 4.07927 1.94822 1.46634 0.26236 1.09861 0.40547 48 1.37105 1.21710 2.04904 1.13565 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06376 3.94504 3.16017 1.46634 0.26236 2.34408 0.10085 49 0.91783 1.75878 2.09494 1.18651 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04042 3.92170 3.92170 1.46634 0.26236 0.90589 0.51782 50 1.19032 1.62484 1.98903 1.01582 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03761 3.99233 3.99233 1.46634 0.26236 1.28464 0.32400 51 0.96613 1.89529 1.73883 1.22606 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03679 4.01410 4.01410 1.46634 0.26236 1.13955 0.38561 52 2.13648 2.33539 2.78180 0.32403 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03602 4.03470 4.03470 1.46634 0.26236 0.44425 1.02529 53 0.22155 3.02194 2.46556 2.73247 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05419 3.32903 4.07927 0.77218 0.61991 1.09861 0.40547 54 2.55130 0.33309 3.14309 1.81915 60 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 55 2.90839 3.81307 0.11704 3.38706 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 56 2.90839 3.81307 0.11704 3.38706 62 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 57 0.12422 3.44464 3.14903 3.16990 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 58 2.80432 2.73563 3.32883 0.17583 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 59 2.27060 0.52154 2.86202 1.40245 65 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 60 2.10076 1.37221 2.63734 0.59323 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 61 2.90839 3.81307 0.11704 3.38706 67 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 62 2.17301 3.28781 0.23156 2.89068 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 63 3.09494 0.15755 3.66956 2.59027 69 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 64 1.89931 2.27322 2.66598 0.38888 70 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 65 2.17238 2.28091 2.37839 0.36932 71 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 66 3.09494 0.15755 3.66956 2.59027 72 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 67 2.80432 2.73563 3.32883 0.17583 73 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 68 2.90839 3.81307 0.11704 3.38706 74 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 69 0.12422 3.44464 3.14903 3.16990 75 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 70 2.13382 2.90906 0.27267 2.72197 76 G - - > 1.38629 1.38629 1.38629 1.38629 0.03443 4.07927 4.07927 1.46634 0.26236 1.09861 0.40547 71 0.44899 2.57235 1.69161 2.29117 77 A - - > 1.38629 1.38629 1.38629 1.38629 0.05348 4.07927 3.34787 1.46634 0.26236 1.09861 0.40547 72 2.45670 1.59347 2.34426 0.48590 78 U - - > 1.38629 1.38629 1.38629 1.38629 0.01769 4.04347 * 1.46634 0.26236 0.00000 * //