INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD52 ACC RF00276 DESC Small nucleolar RNA SNORD52 STATES 205 NODES 66 CLEN 67 W 85 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 00:36:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00276/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 3.647461 CKSUM 3841553922 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.00 NC 44.90 EFP7GF -11.4607 0.71882 ECMLC 0.67140 -6.10384 2.61063 1600000 417053 0.002877 ECMGC 0.38226 -18.51244 -3.80734 1600000 110481 0.003621 ECMLI 0.63737 -5.21945 3.67797 1600000 348360 0.003445 ECMGI 0.42006 -13.40581 -0.68502 1600000 83698 0.004779 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 85 105 -9.354 -9.293 -0.018 -8.070 -8.349 -8.744 IL 1 1 2 1 6 1 24 86 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 25 86 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 72 G C - - MP 3 2 3 7 6 2 27 85 105 -9.354 -9.293 -0.018 -8.070 -8.349 -8.744 -4.113 -2.953 -4.045 0.598 -4.229 -4.535 0.347 -4.331 -4.120 3.232 -4.466 -0.637 1.119 -3.968 -1.678 -2.965 ML 4 2 3 7 6 1 22 83 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 21 83 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 17 81 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 24 84 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 24 84 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 71 g u - - MP 9 8 6 13 6 2 25 83 103 -9.354 -9.293 -0.038 -5.816 -8.349 -8.744 -4.004 -2.751 -4.104 1.573 -5.150 -5.329 -0.619 -4.330 -3.932 2.236 -4.424 2.648 -0.842 -4.492 -2.559 -2.878 ML 10 8 6 13 6 1 21 82 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 19 82 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 17 80 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 23 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 22 82 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 70 G C - - MP 15 14 6 19 4 2 23 81 101 -7.478 -7.685 -0.037 -6.099 -4.093 -2.807 -4.024 0.726 -4.605 -4.480 0.723 -4.474 -4.134 3.308 -4.460 -0.010 -0.243 -3.880 -1.940 -2.960 ML 16 14 6 19 4 1 20 81 102 -3.978 -4.161 -0.423 -2.890 0.172 -0.703 0.465 -0.187 MR 17 14 6 19 4 1 18 80 101 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 16 79 100 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 22 82 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 21 81 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 21 20 6 23 3 1 22 79 99 -8.503 -0.014 -7.157 1.750 -2.728 -1.778 -2.366 D 22 20 6 23 3 0 16 77 98 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 21 80 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 24 23 3 26 3 1 21 78 98 -8.503 -0.014 -7.157 1.481 -2.157 -0.566 -1.698 D 25 23 3 26 3 0 15 76 97 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 20 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 27 26 3 29 3 1 20 77 97 -8.503 -0.014 -7.157 -2.511 -2.337 -3.281 1.817 D 28 26 3 29 3 0 14 75 96 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 19 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 30 29 3 32 3 1 19 76 96 -8.503 -0.014 -7.157 -2.663 -4.020 1.882 -3.392 D 31 29 3 32 3 0 13 74 95 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 18 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 33 32 3 35 3 1 19 75 95 -8.503 -0.014 -7.157 1.874 -3.451 -2.983 -3.104 D 34 32 3 35 3 0 12 73 94 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 36 35 3 38 3 1 18 74 94 -8.503 -0.014 -7.157 -2.511 -2.337 -3.281 1.817 D 37 35 3 38 3 0 11 72 93 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 39 38 3 41 3 1 17 73 93 -8.503 -0.014 -7.157 -2.663 -4.020 1.882 -3.392 D 40 38 3 41 3 0 11 71 92 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 16 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 42 41 3 44 3 1 16 71 92 -8.503 -0.014 -7.157 1.874 -3.451 -2.983 -3.104 D 43 41 3 44 3 0 10 70 90 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 15 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 45 44 3 47 3 1 16 70 91 -8.503 -0.014 -7.157 -0.988 -1.392 -1.495 1.465 D 46 44 3 47 3 0 9 69 89 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 48 47 3 50 3 1 15 69 90 -5.206 -0.050 -7.157 -1.925 -1.441 -2.672 1.683 D 49 47 3 50 3 0 8 68 88 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 13 71 91 -1.556 -0.719 -4.256 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - U - - - ML 51 50 3 53 3 1 14 68 89 -8.503 -0.014 -7.157 -1.480 -0.494 -2.244 1.444 D 52 50 3 53 3 0 8 67 87 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 13 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - C - - - ML 54 53 3 56 3 1 13 67 88 -8.503 -0.014 -7.157 -1.569 1.341 -2.455 -0.079 D 55 53 3 56 3 0 7 66 86 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 12 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - a - - - ML 57 56 3 59 3 1 13 66 86 -8.503 -0.014 -7.157 0.671 -1.047 -0.690 0.382 D 58 56 3 59 3 0 6 65 85 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 11 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - C - - - ML 60 59 3 62 3 1 12 65 85 -8.503 -0.014 -7.157 -1.017 1.309 -2.163 -0.315 D 61 59 3 62 3 0 5 64 84 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 10 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - A - - - ML 63 62 3 65 3 1 11 64 84 -8.503 -0.014 -7.157 1.874 -3.451 -2.983 -3.104 D 64 62 3 65 3 0 5 63 83 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 10 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - G - - - ML 66 65 3 68 3 1 11 63 83 -8.503 -0.014 -7.157 -2.663 -4.020 1.882 -3.392 D 67 65 3 68 3 0 4 62 82 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 69 68 3 71 3 1 10 62 82 -8.503 -0.014 -7.157 1.874 -3.451 -2.983 -3.104 D 70 68 3 71 3 0 4 61 81 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - C - - - ML 72 71 3 74 3 1 9 61 81 -8.503 -0.014 -7.157 -3.036 1.845 -3.839 -2.211 D 73 71 3 74 3 0 3 60 80 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - U - - - ML 75 74 3 77 3 1 9 60 80 -8.503 -0.014 -7.157 -2.511 -2.337 -3.281 1.817 D 76 74 3 77 3 0 3 59 79 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - A - - - ML 78 77 3 80 3 1 8 59 79 -8.503 -0.014 -7.157 1.874 -3.451 -2.983 -3.104 D 79 77 3 80 3 0 2 57 78 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - - - ML 81 80 3 83 3 1 7 58 78 -8.503 -0.014 -7.157 -1.867 -2.929 1.729 -1.837 D 82 80 3 83 3 0 1 56 77 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 6 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - A - - - ML 84 83 3 86 3 1 7 57 77 -8.503 -0.014 -7.157 1.874 -3.451 -2.983 -3.104 D 85 83 3 86 3 0 1 55 76 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 5 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 87 86 3 89 3 1 6 56 76 -8.503 -0.014 -7.157 -2.663 -4.020 1.882 -3.392 D 88 86 3 89 3 0 0 54 75 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 5 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 90 89 3 92 3 1 6 55 75 -8.503 -0.014 -7.157 -2.511 -2.337 -3.281 1.817 D 91 89 3 92 3 0 0 53 74 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 4 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 93 92 3 95 3 1 5 54 74 -8.503 -0.014 -7.157 -3.036 1.845 -3.839 -2.211 D 94 92 3 95 3 0 0 52 73 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 4 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - U - - - ML 96 95 3 98 3 1 5 53 73 -8.503 -0.014 -7.157 -1.463 -1.563 -1.665 1.577 D 97 95 3 98 3 0 0 51 72 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 3 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 99 98 3 101 3 1 4 52 72 -8.503 -0.014 -7.157 -3.036 1.845 -3.839 -2.211 D 100 98 3 101 3 0 0 50 71 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - U - - - ML 102 101 3 104 3 1 3 51 71 -8.503 -0.014 -7.157 -1.941 -1.471 -2.689 1.689 D 103 101 3 104 3 0 0 49 70 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 105 104 3 107 3 1 2 50 70 -8.503 -0.014 -7.157 -2.663 -4.020 1.882 -3.392 D 106 104 3 107 3 0 0 48 68 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 108 107 3 110 3 1 1 49 69 -8.503 -0.064 -4.628 1.874 -3.451 -2.983 -3.104 D 109 107 3 110 3 0 0 47 67 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - u - - - ML 111 110 3 113 3 1 2 48 68 -8.454 -0.015 -7.108 -0.295 0.386 -1.121 0.504 D 112 110 3 113 3 0 0 46 66 -6.709 -2.222 -0.366 IL 113 113 3 113 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - a - - - ML 114 113 3 116 3 1 2 47 67 -8.454 -0.015 -7.108 0.648 -1.076 0.339 -0.527 D 115 113 3 116 3 0 0 45 65 -6.709 -0.932 -1.101 IL 116 116 3 116 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - c - - - ML 117 116 3 119 3 1 2 46 66 -5.283 -0.048 -7.157 -0.134 0.997 -1.727 -0.338 D 118 116 3 119 3 0 0 44 64 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 47 67 -1.549 -0.723 -4.249 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - - - ML 120 119 3 122 3 1 1 44 64 -8.503 -0.014 -7.157 -1.619 -0.815 -2.373 1.542 D 121 119 3 122 3 0 0 43 63 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 46 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - G - - - ML 123 122 3 125 3 1 1 43 63 -8.503 -0.014 -7.157 -0.196 -1.124 1.133 -1.075 D 124 122 3 125 3 0 0 42 62 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 45 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - g - - - ML 126 125 3 128 3 1 1 42 62 -8.503 -0.014 -7.157 -0.263 -0.783 0.953 -0.621 D 127 125 3 128 3 0 0 41 61 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - U - - - ML 129 128 3 131 3 1 1 41 61 -8.503 -0.014 -7.157 -0.709 -0.130 -1.357 1.059 D 130 128 3 131 3 0 0 40 60 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - c - - - ML 132 131 3 134 3 1 1 40 60 -8.503 -0.014 -7.157 -0.212 0.377 -0.837 0.354 D 133 131 3 134 3 0 0 39 59 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - u - - - ML 135 134 3 137 3 1 1 39 59 -8.503 -0.014 -7.157 -0.155 0.412 -1.438 0.488 D 136 134 3 137 3 0 0 38 58 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - U - - - ML 138 137 3 140 3 1 1 38 58 -8.503 -0.014 -7.157 -0.470 -1.179 -0.921 1.207 D 139 137 3 140 3 0 0 37 57 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - G - - - ML 141 140 3 143 3 1 1 37 57 -8.503 -0.014 -7.157 -0.824 -2.754 1.619 -2.209 D 142 140 3 143 3 0 0 36 56 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - A - - - ML 144 143 3 146 3 1 1 36 56 -8.503 -0.014 -7.157 1.593 -2.009 -1.990 -1.051 D 145 143 3 146 3 0 0 35 55 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - u - - - ML 147 146 3 149 3 1 1 35 55 -8.503 -0.014 -7.157 -0.060 -1.064 -0.768 0.982 D 148 146 3 149 3 0 0 34 54 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - G - - - ML 150 149 3 152 3 1 1 34 54 -8.503 -0.014 -7.157 -0.824 -2.754 1.619 -2.209 D 151 149 3 152 3 0 0 33 53 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - U - - - ML 153 152 3 155 3 1 1 33 53 -8.503 -0.014 -7.157 -1.158 -0.805 -1.520 1.395 D 154 152 3 155 3 0 0 32 52 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - C - - - ML 156 155 3 158 3 1 1 32 52 -8.503 -0.014 -7.157 -1.122 1.225 -1.312 -0.321 D 157 155 3 158 3 0 0 30 50 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - A - - - ML 159 158 3 161 3 1 1 31 51 -3.156 -0.183 -7.157 1.171 -1.370 -1.480 0.004 D 160 158 3 161 3 0 0 29 49 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 31 51 -1.895 -0.536 -4.595 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - A - - - ML 162 161 3 164 3 1 1 30 49 -8.503 -0.076 -4.370 1.285 -1.451 -1.140 -0.426 D 163 161 3 164 3 0 0 28 48 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - a - - - ML 165 164 3 167 3 1 1 29 48 -8.442 -0.015 -7.096 0.902 -0.013 -1.353 -0.416 D 166 164 3 167 3 0 0 27 47 -6.812 -2.325 -0.337 IL 167 167 3 167 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - a - - - ML 168 167 3 170 3 1 1 27 47 -8.442 -0.015 -7.096 0.915 -0.895 -1.264 0.214 D 169 167 3 170 3 0 0 26 45 -6.812 -2.325 -0.337 IL 170 170 3 170 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - u - - - ML 171 170 3 173 3 1 1 26 46 -8.442 -0.015 -7.096 -0.048 -0.129 -1.010 0.697 D 172 170 3 173 3 0 0 24 44 -6.812 -2.325 -0.337 IL 173 173 3 173 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - U - - - ML 174 173 3 176 3 1 1 25 45 -3.340 -0.162 -7.096 -0.483 -1.198 -1.311 1.290 D 175 173 3 176 3 0 0 22 42 -6.812 -0.845 -1.203 IL 176 176 3 176 3 1 1 27 47 -1.358 -0.803 -4.769 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - a - - - ML 177 176 3 179 3 1 1 22 41 -8.503 -0.014 -7.157 0.934 -1.155 -0.820 0.103 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - a - - - ML 180 179 3 182 3 1 1 21 39 -8.503 -0.014 -7.157 0.800 -0.747 -0.912 0.178 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - g - - - ML 183 182 3 185 3 1 1 20 38 -8.503 -0.014 -7.157 -0.164 -1.263 0.716 0.068 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - U - - - ML 186 185 3 188 3 1 1 18 37 -8.503 -0.162 -3.275 -1.018 -0.258 -1.529 1.216 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - U - - - ML 189 188 3 191 3 1 1 17 36 -8.357 -0.016 -7.011 -0.668 -1.329 -1.879 1.433 D 190 188 3 191 3 0 0 16 35 -7.372 -0.516 -1.763 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - C - - - ML 192 191 3 194 3 1 1 16 34 -8.503 -0.014 -7.157 -3.036 1.845 -3.839 -2.211 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - U - - - ML 195 194 3 197 3 1 1 14 33 -8.503 -0.014 -7.157 -2.511 -2.337 -3.281 1.817 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 68 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.503 -0.014 -7.157 -2.663 -4.020 1.882 -3.392 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 69 - A - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 1.874 -3.451 -2.983 -3.104 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD52 ACC RF00276 DESC Small nucleolar RNA SNORD52 LENG 67 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 00:36:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00276/CM NSEQ 20 EFFN 3.989258 CKSUM 3841553922 STATS LOCAL MSV -7.4889 0.71882 STATS LOCAL VITERBI -8.7527 0.71882 STATS LOCAL FORWARD -3.3732 0.71882 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27899 1.63601 1.46389 1.21878 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 0.00000 * 1 2.24300 2.48868 0.43926 1.79381 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 2 1.60183 3.14360 0.35283 2.94407 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 3 2.12262 2.20524 0.37095 2.52594 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 4 0.16078 3.36204 2.66095 3.12425 4 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 5 0.34413 2.95710 1.78095 2.64912 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 6 3.23872 3.10094 3.77464 0.11335 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 7 3.33993 4.29050 0.07303 3.84946 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 8 0.07741 3.89309 3.55948 3.66299 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 9 3.23872 3.10094 3.77464 0.11335 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 10 3.33993 4.29050 0.07303 3.84946 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 11 0.07741 3.89309 3.55948 3.66299 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 12 2.11953 2.40844 2.45879 0.35038 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 13 2.80466 2.42965 3.32315 0.20412 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05419 3.23592 4.31067 0.58263 0.81741 1.09861 0.40547 14 2.48679 1.73938 3.01747 0.36778 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 15 2.54902 0.43595 3.17073 1.45579 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 16 0.91187 2.14009 1.87383 1.11765 17 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 17 2.13448 0.45718 2.95410 1.62707 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 18 0.07741 3.89309 3.55948 3.66299 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 19 3.33993 4.29050 0.07303 3.84946 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 20 0.07741 3.89309 3.55948 3.66299 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 21 3.62176 0.09482 4.16763 3.03167 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 22 3.23872 3.10094 3.77464 0.11335 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 23 0.07741 3.89309 3.55948 3.66299 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 24 2.76363 3.50499 0.17428 2.70567 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 25 0.07741 3.89309 3.55948 3.66299 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 26 3.33993 4.29050 0.07303 3.84946 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 27 3.23872 3.10094 3.77464 0.11335 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 28 3.62176 0.09482 4.16763 3.03167 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 29 2.47675 2.53468 2.57952 0.27327 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 30 3.62176 0.09482 4.16763 3.03167 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 31 2.81631 2.45149 3.33488 0.20042 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 32 3.33993 4.29050 0.07303 3.84946 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 33 0.07741 3.89309 3.55948 3.66299 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06447 4.31067 3.01565 1.46634 0.26236 1.09861 0.40547 34 1.60603 1.10318 2.18388 1.03592 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02823 4.27443 4.27443 1.46634 0.26236 1.73184 0.19475 35 0.93139 2.15311 1.13757 1.77625 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02823 4.27443 4.27443 1.46634 0.26236 0.43682 1.03870 36 1.49060 0.67231 2.63894 1.64612 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05263 3.27435 4.31067 0.60259 0.79273 1.09861 0.40547 37 2.58670 1.97270 3.11028 0.29967 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 38 1.54290 2.18392 0.57721 2.18767 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 39 1.59198 1.93911 0.70166 1.85224 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 40 1.91111 1.47344 2.35557 0.63846 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 41 1.54587 1.11051 1.97645 1.14281 43 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 42 1.50465 1.08453 2.42082 1.04698 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 43 1.73488 2.24637 2.03805 0.53185 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 44 1.98814 3.37455 0.24958 3.00205 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 45 0.26593 2.84218 2.83568 2.14959 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 46 1.43461 2.15739 1.92725 0.69191 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 47 1.98814 3.37455 0.24958 3.00205 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 48 2.24994 1.96818 2.47578 0.39930 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 49 2.22453 0.51284 2.32082 1.63527 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 50 0.55743 2.38116 2.45922 1.38880 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.15471 2.04092 4.31067 0.19523 1.72962 1.09861 0.40547 51 0.47952 2.43444 2.20510 1.69809 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07351 4.31067 2.85679 1.46634 0.26236 1.09861 0.40547 52 0.74642 1.38647 2.36610 1.70298 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02849 4.26564 4.26564 1.46634 0.26236 1.83732 0.17345 53 0.73729 2.02864 2.29609 1.23986 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02849 4.26564 4.26564 1.46634 0.26236 1.83732 0.17345 54 1.42445 1.47239 2.10060 0.89747 57 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02849 4.26564 4.26564 1.46634 0.26236 1.83732 0.17345 55 1.74492 2.26316 2.32607 0.47218 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13976 2.15081 4.26564 0.66896 0.71793 0.38344 1.14417 56 0.72609 2.21914 1.96999 1.31662 61 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 57 0.82082 1.91867 2.03459 1.26445 62 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 58 1.51602 2.29813 0.86967 1.34369 63 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 59 2.14476 1.56802 2.48366 0.52592 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13852 4.31067 2.15481 1.46634 0.26236 1.09861 0.40547 60 1.88053 2.36336 2.75328 0.37154 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03037 4.20252 4.20252 1.46634 0.26236 0.20832 1.67103 61 3.62176 0.09482 4.16763 3.03167 66 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 62 3.23872 3.10094 3.77464 0.11335 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 63 3.33993 4.29050 0.07303 3.84946 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 64 0.07741 3.89309 3.55948 3.66299 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05818 4.31067 3.14430 1.46634 0.26236 1.09861 0.40547 65 2.80026 0.44307 2.08831 1.75306 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28055 4.28055 1.46634 0.26236 0.48427 0.95749 66 3.17295 1.19958 2.94002 0.50429 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.02722 4.31067 4.31067 1.46634 0.26236 1.09861 0.40547 67 1.91828 0.48768 2.31399 1.96448 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.01370 4.29715 * 1.46634 0.26236 0.00000 * //