INFERNAL1/a [1.1.5 | Sep 2023] NAME Retro_dr1 ACC RF00214 DESC Retrovirus direct repeat 1 (dr1) STATES 279 NODES 74 CLEN 90 W 108 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 19:10:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00214/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 1.209229 CKSUM 1587642697 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.30 NC 41.60 EFP7GF -6.6747 0.71870 ECMLC 0.61889 -8.20797 1.48814 1600000 484529 0.002477 ECMGC 0.45362 -15.20870 -4.51738 1600000 51087 0.007830 ECMLI 0.61342 -5.60351 3.41851 1600000 303861 0.003949 ECMGI 0.48644 -9.83538 -0.19946 1600000 43424 0.009211 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 108 128 -6.564 -7.810 -0.100 -4.263 IL 1 1 2 1 4 4 36 109 130 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 5 36 109 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 95 - G - - MR 3 2 3 5 3 4 35 108 128 -8.073 -0.023 -6.391 -0.938 -2.043 1.518 -1.428 D 4 2 3 5 3 2 33 106 127 -6.390 -1.568 -0.620 IR 5 5 3 5 3 4 35 108 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 94 - G - - MR 6 5 3 8 3 3 34 107 127 -8.073 -0.023 -6.391 -0.938 -2.043 1.518 -1.428 D 7 5 3 8 3 1 33 105 126 -6.390 -1.568 -0.620 IR 8 8 3 8 3 3 34 107 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 93 - A - - MR 9 8 3 11 2 2 33 106 126 -3.925 -0.098 1.550 -1.773 -1.464 -1.262 D 10 8 3 11 2 1 32 105 125 -4.432 -0.068 IR 11 11 3 11 2 2 33 106 127 -2.038 -0.403 0.000 0.000 0.000 0.000 [ BIF 4 ] - - - - - - B 12 11 3 13 51 1 32 104 125 [ BEGL 5 ] - - - - - - S 13 12 1 14 4 0 0 26 45 -0.050 -6.676 -6.084 -6.724 [ MATP 6 ] 1 12 u a - - MP 14 13 1 18 6 2 2 26 45 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.491 -3.374 -3.407 0.268 -2.493 -4.015 1.809 -3.157 -3.435 0.618 -3.842 -1.376 2.852 -3.645 0.108 -2.317 ML 15 13 1 18 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 16 13 1 18 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 17 13 1 18 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 18 18 5 18 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 19 19 6 19 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 2 11 G C - - MP 20 19 6 24 6 2 2 24 43 -8.990 -8.930 -0.032 -6.550 -7.986 -8.381 -3.762 -1.695 -3.813 0.817 -4.179 -4.237 0.228 -4.136 -3.702 3.329 -4.100 -0.329 -0.082 -3.716 -1.730 -2.762 ML 21 19 6 24 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 6 24 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 6 24 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 3 10 u g - - MP 26 25 6 30 4 2 2 22 41 -6.592 -6.799 -0.068 -5.213 -3.331 -3.262 -3.218 0.323 -2.258 -3.781 2.000 -2.947 -3.257 0.633 -3.640 -1.332 1.562 -3.478 2.211 -2.172 ML 27 25 6 30 4 1 1 23 42 -3.834 -4.016 -0.476 -2.745 0.235 -0.364 -0.341 0.329 MR 28 25 6 30 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 29 25 6 30 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 30 30 5 30 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 31 31 6 31 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 4 - A - - - ML 32 31 6 34 3 1 1 19 38 -7.661 -0.025 -6.315 1.201 -1.104 -0.741 -0.649 D 33 31 6 34 3 0 0 18 37 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 5 - A - - - ML 35 34 3 37 3 1 1 18 36 -7.661 -0.025 -6.315 1.550 -1.773 -1.464 -1.262 D 36 34 3 37 3 0 0 17 36 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 6 - C - - - ML 38 37 3 40 3 1 1 16 35 -7.661 -0.025 -6.315 -1.040 1.363 -1.828 -0.600 D 39 37 3 40 3 0 0 16 34 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 7 - G - - - ML 41 40 3 43 3 1 1 15 33 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 42 40 3 43 3 0 0 15 33 -6.174 -1.687 -0.566 IL 43 43 3 43 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 8 - G - - - ML 44 43 3 46 3 1 1 13 32 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 45 43 3 46 3 0 0 13 32 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 9 - G - - - ML 47 46 3 49 2 1 1 1 1 * 0.000 -0.578 -1.429 1.287 -0.949 D 48 46 3 49 2 0 0 0 0 * 0.000 IL 49 49 3 49 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 15 ] - - - - - - E 50 49 3 -1 0 0 0 0 0 [ BEGR 16 ] - - - - - - S 51 12 1 52 3 0 21 92 112 -7.661 -0.025 -6.315 IL 52 52 2 52 3 1 21 95 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - a - - - ML 53 52 2 55 3 1 21 92 112 -7.661 -0.025 -6.315 0.746 -0.779 -0.672 0.154 D 54 52 2 55 3 0 16 90 111 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 21 94 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - G - - - ML 56 55 3 58 3 1 21 91 111 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 57 55 3 58 3 0 15 89 110 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 20 93 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - G - - - ML 59 58 3 61 3 1 20 90 110 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 60 58 3 61 3 0 14 88 109 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 19 92 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - C - - - ML 62 61 3 64 3 1 19 89 109 -7.661 -0.025 -6.315 -1.040 1.363 -1.828 -0.600 D 63 61 3 64 3 0 13 87 108 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 18 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - - - ML 65 64 3 67 3 1 19 88 108 -7.661 -0.025 -6.315 -0.950 -1.046 -1.648 1.422 D 66 64 3 67 3 0 12 86 106 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 17 89 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - - - ML 68 67 3 70 3 1 18 87 107 -7.661 -0.025 -6.315 -0.950 -1.046 -1.648 1.422 D 69 67 3 70 3 0 11 85 105 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 17 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - g - - - ML 71 70 3 73 3 1 17 86 106 -7.661 -0.025 -6.315 0.246 -1.278 0.827 -0.672 D 72 70 3 73 3 0 10 84 104 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 16 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - - - ML 74 73 3 76 3 1 17 85 105 -7.661 -0.025 -6.315 1.231 -1.115 -0.826 -0.674 D 75 73 3 76 3 0 9 83 103 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 15 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - C - - - ML 77 76 3 79 3 1 16 84 104 -7.661 -0.025 -6.315 -1.040 1.363 -1.828 -0.600 D 78 76 3 79 3 0 8 82 102 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 14 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - - - ML 80 79 3 82 5 1 16 82 102 -6.832 -0.047 -6.647 -6.860 -7.751 -0.579 -0.301 -1.300 1.079 D 81 79 3 82 5 0 8 81 101 -4.959 -0.803 -4.221 -2.596 -2.508 IL 82 82 3 82 5 1 12 83 103 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 91 g c - - MP 83 82 3 87 6 2 17 81 101 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.166 -1.170 -3.213 1.411 -3.546 -3.922 0.682 -3.562 -3.272 2.912 -3.711 0.070 0.404 -3.244 -1.207 -2.208 ML 84 82 3 87 6 1 9 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 3 87 6 1 9 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 3 87 6 0 4 77 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 11 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 12 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 90 a u - - MP 89 88 6 93 6 2 16 79 99 -8.990 -6.978 -0.032 -7.706 -7.986 -8.381 -3.113 -1.617 -3.187 2.796 -3.438 -4.263 0.715 -3.374 -3.164 1.750 -3.691 -0.028 0.409 -3.482 -1.172 -2.126 ML 90 88 6 93 6 1 9 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 9 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 4 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 11 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 11 79 99 -2.454 -0.478 -5.966 -4.133 -5.239 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 88 G C - - MP 95 94 6 99 6 2 16 77 97 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -4.156 -2.819 -4.219 0.575 -4.408 -4.450 0.089 -4.406 -3.919 3.458 -4.302 -0.505 -0.316 -4.077 -1.921 -3.105 ML 96 94 6 99 6 1 9 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 8 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 3 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 10 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 11 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 87 G C - - MP 101 100 6 105 6 2 15 75 95 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -4.156 -2.819 -4.219 0.575 -4.408 -4.450 0.089 -4.406 -3.919 3.458 -4.302 -0.505 -0.316 -4.077 -1.921 -3.105 ML 102 100 6 105 6 1 8 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 8 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 3 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 10 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 10 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 86 G C - - MP 107 106 6 111 6 2 14 73 93 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -4.156 -2.819 -4.219 0.575 -4.408 -4.450 0.089 -4.406 -3.919 3.458 -4.302 -0.505 -0.316 -4.077 -1.921 -3.105 ML 108 106 6 111 6 1 8 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 7 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 3 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 9 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 10 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 85 G C - - MP 113 112 6 117 6 2 13 71 91 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -4.156 -2.819 -4.219 0.575 -4.408 -4.450 0.089 -4.406 -3.919 3.458 -4.302 -0.505 -0.316 -4.077 -1.921 -3.105 ML 114 112 6 117 6 1 7 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 6 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 2 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 9 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 9 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 29 84 a u - - MP 119 118 6 123 6 2 11 69 89 -8.990 -8.930 -0.031 -6.580 -7.986 -8.381 -3.347 -2.502 -3.391 2.931 -3.512 -4.546 0.764 -3.456 -3.307 1.567 -3.832 -0.061 0.342 -3.806 -1.181 -2.257 ML 120 118 6 123 6 1 7 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 5 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 8 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 8 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 30 83 c g - - MP 125 124 6 129 6 2 9 67 87 -8.982 -6.160 -0.041 -7.698 -7.978 -8.373 -3.116 -3.153 -3.094 0.341 0.530 -3.735 2.812 -2.938 -3.132 0.520 -3.564 -1.348 1.265 -3.320 -0.068 -2.100 ML 126 124 6 129 6 1 6 67 87 -6.347 -3.745 -1.407 -1.102 -6.543 -4.072 0.244 -0.068 -0.406 0.147 MR 127 124 6 129 6 1 4 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 2 64 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 7 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 7 67 87 -2.541 -0.445 -6.052 -4.220 -5.326 0.000 0.000 0.000 0.000 [ MATP 35 ] 31 81 u a - - MP 131 130 6 135 4 2 8 65 85 -6.618 -6.825 -0.067 -5.239 -1.291 -2.187 -2.234 0.999 -0.896 -3.063 1.746 -2.433 -2.281 1.076 -2.831 -0.599 2.096 -2.381 -0.001 -1.386 ML 132 130 6 135 4 1 5 66 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 4 1 3 65 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 134 130 6 135 4 0 1 64 84 -4.568 -4.250 -2.265 -0.520 IL 135 135 5 135 4 1 6 67 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 136 136 6 136 3 1 6 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - A - - - ML 137 136 6 139 3 1 6 63 83 -7.661 -0.025 -6.315 1.090 -1.216 -0.311 -0.656 D 138 136 6 139 3 0 1 62 81 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 5 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - U - - - ML 140 139 3 142 3 1 6 62 82 -7.661 -0.025 -6.315 -0.609 -0.390 -1.328 1.126 D 141 139 3 142 3 0 0 60 80 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 5 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - a - - - ML 143 142 3 145 3 1 5 61 81 -7.661 -0.025 -6.315 0.959 -1.164 -0.081 -0.591 D 144 142 3 145 3 0 0 59 79 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 4 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - g - - - ML 146 145 3 148 3 1 5 60 79 -7.661 -0.025 -6.315 0.115 -0.893 0.714 -0.439 D 147 145 3 148 3 0 0 58 78 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 3 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - c - - - ML 149 148 3 151 3 1 4 59 78 -7.661 -0.025 -6.315 -0.560 0.782 -1.328 0.268 D 150 148 3 151 3 0 0 57 77 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 3 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - A - - - ML 152 151 3 154 3 1 4 58 77 -7.661 -0.025 -6.315 1.550 -1.773 -1.464 -1.262 D 153 151 3 154 3 0 0 56 76 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 2 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - U - - - ML 155 154 3 157 3 1 3 57 76 -7.661 -0.025 -6.315 -0.950 -1.046 -1.648 1.422 D 156 154 3 157 3 0 0 55 75 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 2 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - G - - - ML 158 157 3 160 3 1 3 56 75 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 159 157 3 160 3 0 0 54 74 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 2 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 40 - U - - - ML 161 160 3 163 3 1 2 54 74 -7.661 -0.025 -6.315 -0.950 -1.046 -1.648 1.422 D 162 160 3 163 3 0 0 53 73 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 41 - A - - - ML 164 163 3 166 3 1 2 53 73 -8.073 -0.023 -6.391 1.239 -1.181 -1.098 -0.451 D 165 163 3 166 3 0 0 52 72 -5.620 -0.734 -1.403 IL 166 166 3 166 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 80 - G - - MR 167 166 3 169 3 1 1 52 72 -8.073 -0.023 -6.391 -0.938 -2.043 1.518 -1.428 D 168 166 3 169 3 0 0 51 70 -6.390 -1.568 -0.620 IR 169 169 3 169 3 1 1 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 79 - G - - MR 170 169 3 172 5 1 1 51 71 -6.832 -0.047 -6.647 -6.860 -7.751 -0.938 -2.043 1.518 -1.428 D 171 169 3 172 5 0 0 50 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 172 172 3 172 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 42 78 u a - - MP 173 172 3 177 6 2 2 50 70 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.626 -3.420 -3.522 0.238 -2.596 -4.134 1.716 -3.247 -3.534 0.602 -3.933 -1.333 2.964 -3.794 -0.286 -2.407 ML 174 172 3 177 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 3 177 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 3 177 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 43 77 a u - - MP 179 178 6 183 6 2 2 48 68 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.347 -2.502 -3.391 2.931 -3.512 -4.546 0.764 -3.456 -3.307 1.567 -3.832 -0.061 0.342 -3.806 -1.181 -2.257 ML 180 178 6 183 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 182 178 6 183 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 183 183 5 183 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 184 184 6 184 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 44 76 g c - - MP 185 184 6 189 6 2 2 46 66 -8.990 -7.034 -0.031 -7.706 -7.986 -8.381 -2.091 -1.612 -2.341 1.220 -2.359 -2.963 1.290 -2.558 -0.035 1.644 -2.318 1.205 1.028 -2.417 -0.382 -1.426 ML 186 184 6 189 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 187 184 6 189 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 188 184 6 189 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 189 189 5 189 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 190 190 6 190 5 1 1 46 65 -2.452 -0.479 -5.963 -4.131 -5.237 0.000 0.000 0.000 0.000 [ MATP 51 ] 45 74 g c - - MP 191 190 6 195 6 2 2 44 64 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -1.971 -1.761 -2.182 1.153 -2.120 -2.905 1.440 -2.422 -0.987 1.558 0.690 -0.075 1.174 -2.295 -0.196 -1.330 ML 192 190 6 195 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 193 190 6 195 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 194 190 6 195 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 195 195 5 195 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 196 196 6 196 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 46 73 C G - - MP 197 196 6 201 6 2 2 42 62 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.965 -3.808 -3.748 -0.104 -2.610 -4.233 3.317 -3.359 -3.783 0.245 -4.101 -1.750 0.954 -4.069 -0.309 -2.645 ML 198 196 6 201 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 199 196 6 201 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 200 196 6 201 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 201 201 5 201 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 202 202 6 202 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 47 72 G C - - MP 203 202 6 207 4 2 2 40 60 -6.618 -6.825 -0.067 -5.239 -3.609 -2.605 -3.658 0.818 -3.828 -4.117 0.503 -3.938 -3.591 3.258 -2.707 -0.373 0.156 -3.586 -1.445 -2.632 ML 204 202 6 207 4 1 1 41 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 205 202 6 207 4 1 1 40 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 206 202 6 207 4 0 0 39 59 -4.568 -4.250 -2.265 -0.520 IL 207 207 5 207 4 1 1 42 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 208 208 6 208 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 48 - a - - - ML 209 208 6 211 3 1 1 38 57 -7.661 -0.025 -6.315 0.475 0.090 -0.893 0.011 D 210 208 6 211 3 0 0 36 56 -6.174 -1.687 -0.566 IL 211 211 3 211 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 49 - a - - - ML 212 211 3 214 3 1 1 37 56 -7.661 -0.025 -6.315 0.856 -0.732 -0.893 0.070 D 213 211 3 214 3 0 0 35 55 -6.174 -1.687 -0.566 IL 214 214 3 214 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 50 - A - - - ML 215 214 3 217 3 1 1 36 55 -7.661 -0.025 -6.315 1.056 -1.199 -0.248 -0.635 D 216 214 3 217 3 0 0 34 54 -6.174 -1.687 -0.566 IL 217 217 3 217 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 51 - a - - - ML 218 217 3 220 3 1 1 35 54 -8.073 -0.023 -6.391 0.772 -0.952 -0.090 -0.260 D 219 217 3 220 3 0 0 33 52 -5.620 -0.734 -1.403 IL 220 220 3 220 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 58 ] - 71 - G - - MR 221 220 3 223 3 1 1 34 53 -8.073 -0.023 -6.391 -0.938 -2.043 1.518 -1.428 D 222 220 3 223 3 0 0 32 51 -6.390 -1.568 -0.620 IR 223 223 3 223 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 59 ] - 70 - C - - MR 224 223 3 226 3 1 1 32 52 -4.881 -0.068 -6.391 -1.040 1.363 -1.828 -0.600 D 225 223 3 226 3 0 0 31 50 -6.390 -1.568 -0.620 IR 226 226 3 226 3 1 1 33 52 -2.038 -0.505 -4.276 0.000 0.000 0.000 0.000 [ MATR 60 ] - 68 - A - - MR 227 226 3 229 5 1 1 31 50 -6.832 -0.047 -6.647 -6.860 -7.751 1.550 -1.773 -1.464 -1.262 D 228 226 3 229 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 229 229 3 229 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 52 67 g u - - MP 230 229 3 234 6 2 2 30 49 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.257 -2.191 -3.389 1.325 -3.808 -4.562 0.509 -3.468 -3.164 1.836 -3.670 2.565 0.147 -3.827 -1.428 -2.178 ML 231 229 3 234 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 232 229 3 234 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 233 229 3 234 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 234 234 5 234 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 235 235 6 235 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 53 66 C G - - MP 236 235 6 240 6 2 2 28 47 -8.990 -8.930 -0.031 -6.591 -7.986 -8.381 -3.741 -3.708 -3.631 -0.063 -1.554 -4.197 3.290 -3.356 -3.670 0.185 -4.042 -1.771 0.967 -3.895 -0.369 -2.573 ML 237 235 6 240 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 238 235 6 240 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 239 235 6 240 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 240 240 5 240 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 241 241 6 241 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 54 65 g u - - MP 242 241 6 246 6 2 2 26 45 -8.982 -8.921 -0.023 -7.698 -7.978 -8.373 -3.234 -2.181 -3.363 1.335 -3.763 -4.520 0.550 -3.446 -3.146 1.867 -3.651 2.517 0.187 -3.789 -1.387 -2.158 ML 243 241 6 246 6 1 1 26 45 -6.345 -6.692 -1.406 -0.915 -6.541 -4.071 0.341 -0.551 0.150 -0.088 MR 244 241 6 246 6 1 1 25 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 245 241 6 246 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 246 246 5 246 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 247 247 6 247 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 55 64 g u - - MP 248 247 6 252 4 2 2 24 43 -6.593 -6.800 -0.068 -5.214 -3.192 -2.158 -3.325 1.463 -3.760 -4.484 0.541 -3.432 -3.123 1.883 -3.632 2.437 0.209 -3.730 -1.389 -2.131 ML 249 247 6 252 4 1 1 25 44 -3.830 -4.012 -0.478 -2.742 0.341 -0.551 0.150 -0.088 MR 250 247 6 252 4 1 1 24 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 251 247 6 252 4 0 0 23 43 -4.568 -4.250 -2.265 -0.520 IL 252 252 5 252 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 253 253 6 253 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 56 - G - - - ML 254 253 6 256 3 1 1 21 40 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 255 253 6 256 3 0 0 20 39 -6.174 -1.687 -0.566 IL 256 256 3 256 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 57 - G - - - ML 257 256 3 259 3 1 1 20 39 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 258 256 3 259 3 0 0 19 38 -6.174 -1.687 -0.566 IL 259 259 3 259 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 58 - c - - - ML 260 259 3 262 3 1 1 19 38 -7.661 -0.025 -6.315 -0.526 0.684 -1.290 0.367 D 261 259 3 262 3 0 0 18 37 -6.174 -1.687 -0.566 IL 262 262 3 262 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 59 - U - - - ML 263 262 3 265 3 1 1 18 36 -7.661 -0.025 -6.315 -0.693 -0.595 -1.406 1.228 D 264 262 3 265 3 0 0 17 36 -6.174 -1.687 -0.566 IL 265 265 3 265 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 60 - U - - - ML 266 265 3 268 3 1 1 16 35 -7.661 -0.025 -6.315 -0.323 -0.701 -0.809 1.010 D 267 265 3 268 3 0 0 16 34 -6.174 -1.687 -0.566 IL 268 268 3 268 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 61 - C - - - ML 269 268 3 271 3 1 1 15 33 -7.661 -0.025 -6.315 -1.040 1.363 -1.828 -0.600 D 270 268 3 271 3 0 0 15 33 -6.174 -1.687 -0.566 IL 271 271 3 271 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 62 - G - - - ML 272 271 3 274 3 1 1 13 32 -7.661 -0.048 -5.158 -0.938 -2.043 1.518 -1.428 D 273 271 3 274 3 0 0 13 32 -6.174 -1.687 -0.566 IL 274 274 3 274 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 63 - G - - - ML 275 274 3 277 2 1 1 1 1 * 0.000 -0.892 -1.988 1.497 -1.373 D 276 274 3 277 2 0 0 0 0 * 0.000 IL 277 277 3 277 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 278 277 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Retro_dr1 ACC RF00214 DESC Retrovirus direct repeat 1 (dr1) LENG 90 MAXL 185 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 19:10:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00214/CM NSEQ 26 EFFN 1.786865 CKSUM 1587642697 STATS LOCAL MSV -8.6394 0.71870 STATS LOCAL VITERBI -9.9971 0.71870 STATS LOCAL FORWARD -3.3375 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50316 1.51882 1.10770 1.47715 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 0.00000 * 1 2.59636 1.58065 2.31836 0.47614 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 2 2.07694 2.75228 0.30186 2.63856 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 3 2.52636 1.39644 2.28453 0.56080 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 4 0.47616 2.26457 1.97745 1.99115 4 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 5 0.21220 2.95303 2.70566 2.62844 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 6 2.50072 0.28682 3.06852 2.11328 6 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 7 2.39999 3.23264 0.21140 2.80712 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 8 2.39999 3.23264 0.21140 2.80712 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 9 2.01844 2.59157 0.36545 2.31922 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06903 3.76219 3.13576 1.46634 0.26236 1.09861 0.40547 10 1.60598 2.44765 0.48959 2.30327 10 G - - > 1.38629 1.38629 1.38629 1.38629 0.04859 3.74175 3.74175 1.46634 0.26236 0.72706 0.66034 11 2.85501 0.33536 2.56791 1.89269 11 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 12 0.57594 2.47578 1.35306 2.35095 12 A - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 13 0.82421 1.99529 1.90506 1.28508 13 a - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 14 2.39999 3.23264 0.21140 2.80712 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 15 2.39999 3.23264 0.21140 2.80712 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 16 2.50072 0.28682 3.06852 2.11328 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 17 2.34580 2.35574 2.85058 0.28556 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 18 2.34580 2.35574 2.85058 0.28556 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 19 1.23710 2.43918 0.71215 2.02532 19 g - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 20 0.45298 2.27439 2.05404 2.01598 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 21 2.50072 0.28682 3.06852 2.11328 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 22 1.95003 1.62927 2.46210 0.55095 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 23 1.53980 2.30357 0.56057 2.16461 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 24 0.54864 2.42531 1.45743 2.29283 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 25 2.40390 2.94092 0.22185 2.88633 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 26 2.40370 2.94072 0.22190 2.88604 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 27 2.40342 2.94043 0.22198 2.88562 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 28 2.40312 2.94012 0.22207 2.88517 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 29 0.48021 2.44232 1.59736 2.38644 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 30 2.42219 0.52375 2.24089 1.54827 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 31 1.70772 1.34550 1.68391 0.98707 31 u - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 32 0.55609 2.38206 1.61216 2.00443 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 33 1.98046 1.70925 2.49040 0.51397 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 34 0.65551 2.33520 1.42306 1.94454 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 35 1.35476 2.08385 0.78787 1.81567 35 g - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 36 1.94031 0.72966 2.49533 1.23170 36 c - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 37 0.21220 2.95303 2.70566 2.62844 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 38 2.34580 2.35574 2.85058 0.28556 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 39 2.39999 3.23264 0.21140 2.80712 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 40 2.34580 2.35574 2.85058 0.28556 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 41 0.44290 2.35337 2.30864 1.81166 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 42 2.66796 1.68725 2.38306 0.42570 42 U - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 43 0.48009 2.44263 1.59738 2.38694 43 A - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 44 1.67956 1.80293 0.77272 1.67679 44 g - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 45 1.73595 1.69504 0.84214 1.56357 45 g - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 46 2.91181 0.32177 2.64887 1.89696 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 47 2.16549 2.57536 0.32025 2.48639 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 48 1.02906 1.27136 2.09637 1.43002 48 a - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 49 0.73668 1.95233 2.09799 1.36003 49 a - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 50 0.58185 2.36699 1.56024 1.98566 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 51 0.80852 2.13242 1.42862 1.62815 51 a - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 52 1.79845 2.60265 0.38905 2.49294 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 53 2.85728 0.32149 2.63825 1.92401 53 C - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 54 1.77971 2.55980 0.40390 2.45014 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 55 1.66127 2.57667 0.43523 2.44230 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 56 2.39999 3.23264 0.21140 2.80712 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 57 2.39999 3.23264 0.21140 2.80712 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 58 1.90309 0.80619 2.45398 1.14448 58 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 59 2.06439 1.89814 2.57074 0.43575 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 60 1.72897 1.98704 2.04415 0.58709 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 61 2.50072 0.28682 3.06852 2.11328 61 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 62 2.39999 3.23264 0.21140 2.80712 62 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06792 3.76219 3.15994 1.46634 0.26236 1.09861 0.40547 63 2.35844 3.18419 0.22236 2.75841 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04853 3.74281 3.74281 1.46634 0.26236 1.34188 0.30294 64 2.66172 1.61143 2.38256 0.44901 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.04853 3.74281 3.74281 1.46634 0.26236 1.34188 0.30294 65 2.67966 1.63902 2.37164 0.44019 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.04853 3.74281 3.74281 1.46634 0.26236 0.73963 0.64873 66 2.07112 2.80447 0.29836 2.63974 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 67 2.71953 1.67050 2.41178 0.42116 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 68 0.21220 2.95303 2.70566 2.62844 68 A - - - 1.38629 1.38629 1.38629 1.38629 0.09128 2.74877 3.76219 0.61479 0.77817 1.09861 0.40547 69 2.50072 0.28682 3.06852 2.11328 70 C - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 70 2.39999 3.23264 0.21140 2.80712 71 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 71 2.71543 0.37920 2.31767 1.89106 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 72 2.17124 2.81540 0.27873 2.66874 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 73 1.63048 1.54965 0.99384 1.50647 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.06792 3.15994 3.76219 0.87643 0.53831 1.09861 0.40547 74 1.50428 1.53675 1.59092 1.02441 76 u - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 75 2.62173 1.85966 2.25898 0.40475 77 U - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 76 0.48297 2.56519 1.52401 2.42690 78 A - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 77 2.39999 3.23264 0.21140 2.80712 79 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 78 2.39999 3.23264 0.21140 2.80712 80 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 79 1.02121 1.85112 1.25744 1.61748 81 a - - > 1.38629 1.38629 1.38629 1.38629 0.09128 2.74877 3.76219 0.61479 0.77817 1.09861 0.40547 80 1.27714 2.40473 0.65020 2.21701 83 G - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 81 2.61573 1.85926 2.25706 0.40581 84 U - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 82 3.09776 0.26055 2.77006 2.10734 85 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 83 3.09766 0.26056 2.77002 2.10732 86 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 84 3.09680 0.26066 2.76967 2.10716 87 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 85 3.09439 0.26096 2.76869 2.10669 88 C - - > 1.38629 1.38629 1.38629 1.38629 0.06903 3.13576 3.76219 0.85853 0.55127 1.09861 0.40547 86 2.51273 1.62271 2.23258 0.48721 90 U - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 87 2.39862 0.62187 2.11247 1.38119 91 C - - > 1.38629 1.38629 1.38629 1.38629 0.11370 2.47408 3.76219 0.48241 0.96048 1.09861 0.40547 88 0.21220 2.95303 2.70566 2.62844 93 A - - : 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 89 2.39999 3.23264 0.21140 2.80712 94 G - - : 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 90 2.39999 3.23264 0.21140 2.80712 95 G - - : 1.38629 1.38629 1.38629 1.38629 0.02407 3.73868 * 1.46634 0.26236 0.00000 * //