INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD38 ACC RF00212 DESC Small nucleolar RNA SNORD38 STATES 214 NODES 64 CLEN 70 W 87 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 00:14:58 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00212/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.293457 CKSUM 2321779813 NULL 0.000 0.000 0.000 0.000 GA 44.00 TC 44.00 NC 43.80 EFP7GF -7.5445 0.71890 ECMLC 0.66615 -5.68120 2.99600 1600000 388623 0.003088 ECMGC 0.43715 -15.02278 -2.58195 1600000 92037 0.004346 ECMLI 0.61867 -4.03051 4.80197 1600000 283367 0.004235 ECMGI 0.45696 -10.31835 0.83411 1600000 65361 0.006120 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 87 107 -9.163 -9.103 -0.079 -7.879 -8.159 -4.567 IL 1 1 2 1 6 1 27 89 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 27 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 74 U A - - MP 3 2 3 7 6 2 29 87 107 -9.105 -9.044 -0.126 -3.770 -8.101 -8.496 -4.184 -4.009 -4.023 -0.304 -2.966 -4.588 1.362 -3.661 -4.028 -0.049 -4.401 -1.908 3.325 -4.336 -0.642 -2.853 ML 4 2 3 7 6 1 25 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 24 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 21 83 103 -9.811 -8.509 -4.306 -4.988 -5.006 -0.180 IL 7 7 5 7 6 1 27 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 27 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 73 C G - - MP 9 8 6 13 6 2 27 85 105 -9.002 -8.941 -0.023 -7.718 -7.998 -8.393 -4.023 -3.874 -3.797 -0.163 -2.644 -4.276 3.347 -3.398 -3.834 0.172 -4.146 -1.816 0.917 -4.124 -0.342 -2.693 ML 10 8 6 13 6 1 25 84 104 -7.187 -7.533 -0.539 -1.942 -7.383 -4.912 -0.461 0.957 -1.201 -0.157 MR 11 8 6 13 6 1 23 84 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 20 82 102 -9.811 -8.509 -4.306 -4.988 -1.180 -1.081 IL 13 13 5 13 6 1 25 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 25 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 72 U A - - MP 15 14 6 19 6 2 25 83 103 -9.105 -9.044 -0.021 -7.821 -8.101 -8.496 -4.184 -4.009 -4.023 -0.304 -2.966 -4.588 1.362 -3.661 -4.028 -0.049 -4.401 -1.908 3.325 -4.336 -0.642 -2.853 ML 16 14 6 19 6 1 23 82 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 21 82 102 -7.548 -6.277 -2.186 -6.255 -0.507 -4.469 1.089 -0.962 -0.709 -0.419 D 18 14 6 19 6 0 20 80 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 24 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 24 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 71 C G - - MP 21 20 6 25 4 2 23 81 101 -6.942 -7.149 -0.354 -2.306 -4.544 -4.449 -4.235 -0.682 -2.954 -4.647 3.549 -3.763 -4.284 -0.441 -4.545 -2.396 0.561 -4.613 -0.660 -3.124 ML 22 20 6 25 4 1 23 82 102 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 20 81 101 -5.439 -4.468 -2.335 -0.447 -0.095 -1.008 0.869 -0.435 D 24 20 6 25 4 0 19 80 100 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 24 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 27 26 6 29 3 1 24 79 99 -7.693 -0.025 -6.347 0.995 -1.197 -0.115 -0.626 D 28 26 6 29 3 0 19 78 98 -7.970 -0.902 -1.117 IL 29 29 3 29 3 1 23 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 30 29 3 32 3 1 23 78 98 -7.959 -0.021 -6.613 -1.568 -2.787 1.721 -2.173 D 31 29 3 32 3 0 17 76 96 -7.119 -2.632 -0.266 IL 32 32 3 32 3 1 22 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 22 77 97 -7.959 -0.021 -6.613 -1.475 -1.473 -2.208 1.615 D 34 32 3 35 3 0 17 75 95 -7.119 -2.632 -0.266 IL 35 35 3 35 3 1 21 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 21 76 96 -7.959 -0.021 -6.613 -1.568 -2.787 1.721 -2.173 D 37 35 3 38 3 0 16 74 94 -7.119 -2.632 -0.266 IL 38 38 3 38 3 1 21 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 21 75 95 -7.959 -0.021 -6.613 1.716 -2.360 -1.993 -1.901 D 40 38 3 41 3 0 16 74 94 -7.119 -0.640 -1.510 IL 41 41 3 41 3 1 20 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 42 41 3 44 3 1 20 74 94 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 43 41 3 44 3 0 14 72 92 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 45 44 3 47 3 1 19 73 93 -8.097 -0.019 -6.751 -1.861 -3.123 1.780 -2.511 D 46 44 3 47 3 0 14 71 91 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 18 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 48 47 3 50 3 1 18 72 92 -8.097 -0.019 -6.751 1.771 -2.640 -2.245 -2.209 D 49 47 3 50 3 0 13 70 90 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 17 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 51 50 3 53 3 1 18 71 91 -8.097 -0.019 -6.751 1.381 -1.716 -0.601 -1.209 D 52 50 3 53 3 0 12 69 89 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 54 53 3 56 3 1 17 70 90 -8.097 -0.019 -6.751 1.771 -2.640 -2.245 -2.209 D 55 53 3 56 3 0 11 68 88 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 57 56 3 59 3 1 16 69 88 -8.097 -0.019 -6.751 1.771 -2.640 -2.245 -2.209 D 58 56 3 59 3 0 11 67 87 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 15 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 60 59 3 62 3 1 15 68 87 -8.097 -0.019 -6.751 -1.180 1.263 -2.015 -0.135 D 61 59 3 62 3 0 10 66 86 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 14 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 63 62 3 65 3 1 14 67 86 -8.097 -0.019 -6.751 -0.339 -1.033 -1.493 1.242 D 64 62 3 65 3 0 9 65 85 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - u - - - ML 66 65 3 68 3 1 14 66 85 -8.097 -0.019 -6.751 -0.816 0.376 -1.599 0.851 D 67 65 3 68 3 0 9 64 84 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 69 68 3 71 3 1 13 65 84 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 70 68 3 71 3 0 8 63 83 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 72 71 3 74 3 1 12 63 83 -8.097 -0.019 -6.751 -1.861 -3.123 1.780 -2.511 D 73 71 3 74 3 0 7 62 82 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 75 74 3 77 3 1 11 62 82 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 76 74 3 77 3 0 6 61 81 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 11 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 78 77 3 80 3 1 10 61 81 -8.479 -0.017 -6.796 -2.066 1.701 -2.897 -1.414 D 79 77 3 80 3 0 6 60 80 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 9 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 70 - G - - MR 81 80 3 83 3 1 9 60 80 -8.479 -0.017 -6.796 -0.318 -2.016 1.368 -1.434 D 82 80 3 83 3 0 4 59 78 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 9 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 69 - A - - MR 84 83 3 86 3 1 9 59 79 -8.479 -0.017 -6.796 1.771 -2.640 -2.245 -2.209 D 85 83 3 86 3 0 4 58 77 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 8 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 68 - G - - MR 87 86 3 89 3 1 8 58 78 -8.479 -0.017 -6.796 -1.861 -3.123 1.780 -2.511 D 88 86 3 89 3 0 3 57 76 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 7 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 67 - U - - MR 90 89 3 92 3 1 7 57 77 -8.479 -0.017 -6.796 -1.734 -1.687 -2.479 1.682 D 91 89 3 92 3 0 2 56 75 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 6 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 66 - C - - MR 93 92 3 95 3 1 6 56 76 -3.497 -0.148 -6.796 -2.066 1.701 -2.897 -1.414 D 94 92 3 95 3 0 2 54 74 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 6 57 76 -2.310 -0.404 -4.548 0.000 0.000 0.000 0.000 [ MATR 28 ] - 64 - U - - MR 96 95 3 98 3 1 5 55 75 -8.479 -0.017 -6.796 -0.548 -0.966 -0.326 1.005 D 97 95 3 98 3 0 1 53 73 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 5 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 63 - G - - MR 99 98 3 101 3 1 4 54 74 -8.479 -0.017 -6.796 0.218 -1.701 1.048 -1.114 D 100 98 3 101 3 0 1 52 72 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 4 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 62 - u - - MR 102 101 3 104 3 1 4 53 73 -8.479 -0.142 -3.459 0.448 -0.900 -1.144 0.721 D 103 101 3 104 3 0 0 52 71 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 4 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 61 - u - - MR 105 104 3 107 3 1 4 52 72 -8.355 -0.019 -6.673 0.022 -0.802 -0.138 0.587 D 106 104 3 107 3 0 0 51 70 -7.193 -0.689 -1.422 IR 107 107 3 107 3 1 3 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 60 - U - - MR 108 107 3 110 3 1 4 51 71 -8.479 -0.017 -6.796 -1.734 -1.687 -2.479 1.682 D 109 107 3 110 3 0 0 49 69 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 2 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 59 - g - - MR 111 110 3 113 3 1 3 50 70 -8.479 -0.017 -6.796 -0.453 -1.068 0.548 0.411 D 112 110 3 113 3 0 0 48 68 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 2 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 58 - a - - MR 114 113 3 116 3 1 3 49 69 -2.773 -0.244 -6.796 0.667 -0.399 -1.042 0.225 D 115 113 3 116 3 0 0 46 65 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 2 50 70 -1.385 -0.762 -5.179 0.000 0.000 0.000 0.000 [ MATR 35 ] - 55 - A - - MR 117 116 3 119 3 1 2 46 65 -8.479 -0.017 -6.796 1.156 -1.556 -0.099 -1.008 D 118 116 3 119 3 0 0 44 63 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 54 - a - - MR 120 119 3 122 3 1 2 45 64 -8.479 -0.017 -6.796 0.955 -0.628 -0.488 -0.512 D 121 119 3 122 3 0 0 43 62 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 53 - u - - MR 123 122 3 125 3 1 2 44 63 -8.479 -0.017 -6.796 -0.007 -0.850 -0.215 0.668 D 124 122 3 125 3 0 0 42 61 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 52 - A - - MR 126 125 3 128 3 1 1 43 62 -8.479 -0.017 -6.796 1.771 -2.640 -2.245 -2.209 D 127 125 3 128 3 0 0 41 60 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 51 - G - - MR 129 128 3 131 3 1 1 42 61 -8.479 -0.017 -6.796 -1.861 -3.123 1.780 -2.511 D 130 128 3 131 3 0 0 40 59 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 50 - u - - MR 132 131 3 134 3 1 1 41 60 -8.479 -0.017 -6.796 0.146 -0.831 -0.531 0.713 D 133 131 3 134 3 0 0 39 58 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 49 - A - - MR 135 134 3 137 3 1 1 40 59 -8.479 -0.017 -6.796 1.771 -2.640 -2.245 -2.209 D 136 134 3 137 3 0 0 38 57 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 48 - G - - MR 138 137 3 140 3 1 1 39 58 -8.479 -0.017 -6.796 -1.861 -3.123 1.780 -2.511 D 139 137 3 140 3 0 0 37 56 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 47 - u - - MR 141 140 3 143 3 1 1 38 57 -8.479 -0.017 -6.796 0.448 -0.900 -1.144 0.721 D 142 140 3 143 3 0 0 36 55 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 46 - G - - MR 144 143 3 146 3 1 1 37 56 -8.479 -0.017 -6.796 -1.861 -3.123 1.780 -2.511 D 145 143 3 146 3 0 0 35 54 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 45 - A - - MR 147 146 3 149 3 1 1 36 55 -8.479 -0.017 -6.796 1.305 -1.358 -1.368 -0.413 D 148 146 3 149 3 0 0 34 53 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 44 - A - - MR 150 149 3 152 3 1 1 35 54 -8.479 -0.017 -6.796 1.156 -1.556 -0.099 -1.008 D 151 149 3 152 3 0 0 33 52 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 43 - a - - MR 153 152 3 155 3 1 1 34 53 -8.479 -0.017 -6.796 0.745 -0.949 -1.116 0.427 D 154 152 3 155 3 0 0 32 51 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 42 - g - - MR 156 155 3 158 3 1 1 33 52 -8.479 -0.017 -6.796 -0.507 -0.384 0.920 -0.648 D 157 155 3 158 3 0 0 31 50 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 41 - g - - MR 159 158 3 161 3 1 1 32 51 -8.479 -0.017 -6.796 0.206 -0.941 0.254 0.180 D 160 158 3 161 3 0 0 30 49 -6.390 -1.568 -0.620 IR 161 161 3 161 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 40 - c - - MR 162 161 3 164 3 1 1 31 50 -8.479 -0.383 -2.120 0.039 0.089 -0.214 0.067 D 163 161 3 164 3 0 0 29 48 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 39 - u - - MR 165 164 3 167 3 1 1 30 49 -3.378 -0.164 -6.436 0.484 -0.728 -0.927 0.557 D 166 164 3 167 3 0 0 29 47 -7.979 -0.359 -2.209 IR 167 167 3 167 3 1 1 30 49 -2.255 -0.423 -4.493 0.000 0.000 0.000 0.000 [ MATR 52 ] - 37 - A - - MR 168 167 3 170 5 1 1 29 48 -7.210 -0.036 -7.025 -7.237 -8.129 1.771 -2.640 -2.245 -2.209 D 169 167 3 170 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 170 170 3 170 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 23 36 C G - - MP 171 170 3 175 6 2 2 28 47 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.841 -4.772 -4.481 -0.980 -3.138 -4.854 3.632 -3.977 -4.541 -0.778 -4.769 -2.724 0.345 -4.891 -0.853 -3.372 ML 172 170 3 175 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 3 175 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 24 35 A U - - MP 177 176 6 181 6 2 2 26 45 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.035 -3.006 -4.034 3.469 -4.497 -5.585 -0.180 -4.059 -3.918 0.815 -4.477 -0.445 -0.597 -4.730 -2.120 -2.855 ML 178 176 6 181 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 25 34 G C - - MP 183 182 6 187 6 2 2 24 43 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.004 -3.220 -5.132 0.022 -5.601 -4.794 -0.900 -5.390 -4.495 3.695 -4.814 -0.930 -1.279 -4.639 -2.952 -4.005 ML 184 182 6 187 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 26 33 U A - - MP 189 188 6 193 4 2 2 22 41 -7.090 -7.297 -0.048 -5.711 -3.819 -3.786 -3.718 -0.105 -2.712 -4.305 1.604 -3.410 -3.735 0.112 -4.136 -1.820 3.031 -3.975 0.695 -2.610 ML 190 188 6 193 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 192 188 6 193 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 193 193 5 193 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 194 194 6 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 27 - U - - - ML 195 194 6 197 3 1 1 19 37 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 196 194 6 197 3 0 0 18 37 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 28 - C - - - ML 198 197 3 200 3 1 1 17 36 -8.097 -0.019 -6.751 -2.066 1.701 -2.897 -1.414 D 199 197 3 200 3 0 0 17 36 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 29 - U - - - ML 201 200 3 203 3 1 1 16 35 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 30 - G - - - ML 204 203 3 206 3 1 1 15 33 -8.097 -0.019 -6.751 -1.861 -3.123 1.780 -2.511 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 31 - C - - - ML 207 206 3 209 3 1 1 13 31 -8.097 -0.019 -6.751 -2.066 1.701 -2.897 -1.414 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 32 - U - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 -1.734 -1.687 -2.479 1.682 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD38 ACC RF00212 DESC Small nucleolar RNA SNORD38 LENG 70 MAXL 154 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 00:14:58 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00212/CM NSEQ 7 EFFN 2.683105 CKSUM 2321779813 STATS LOCAL MSV -8.8934 0.71890 STATS LOCAL VITERBI -9.2465 0.71890 STATS LOCAL FORWARD -3.5607 0.71890 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27096 1.69830 1.33504 1.29720 1.38629 1.38629 1.38629 1.38629 0.14560 4.00454 2.14333 1.46634 0.26236 0.00000 * 1 2.94496 1.86349 2.67136 0.32420 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04132 3.90026 3.90026 1.46634 0.26236 2.13198 0.12625 2 2.66336 0.39238 2.46989 1.77053 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04132 3.90026 3.90026 1.46634 0.26236 2.13198 0.12625 3 2.83627 1.85826 2.62402 0.33841 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04132 3.90026 3.90026 1.46634 0.26236 2.13198 0.12625 4 3.08839 0.25981 2.88689 2.05981 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.25410 3.90026 1.58889 1.46634 0.26236 2.13198 0.12625 5 0.67023 2.27035 1.46019 1.87771 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.05087 3.69702 3.69702 1.46634 0.26236 0.55196 0.85760 6 2.64896 3.51966 0.15736 3.09518 6 G - - - 1.38629 1.38629 1.38629 1.38629 0.04132 3.90026 3.90026 1.46634 0.26236 2.13198 0.12625 7 2.56346 2.53537 3.07893 0.22600 7 U - - - 1.38629 1.38629 1.38629 1.38629 0.04132 3.90026 3.90026 1.46634 0.26236 2.13198 0.12625 8 2.64896 3.51966 0.15736 3.09518 8 G - - - 1.38629 1.38629 1.38629 1.38629 0.04132 3.90026 3.90026 1.46634 0.26236 2.13198 0.12625 9 0.16354 3.18957 2.91854 2.88833 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.04132 3.90026 3.90026 1.46634 0.26236 0.27077 1.43883 10 2.75973 2.69845 3.28275 0.18410 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 11 2.86159 3.76056 0.12336 3.33513 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 12 0.13060 3.39787 3.10666 3.11824 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 13 0.39767 2.67546 1.81775 2.33456 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 14 0.13060 3.39787 3.10666 3.11824 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 15 0.13060 3.39787 3.10666 3.11824 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 16 2.32109 0.46433 2.91146 1.51923 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 17 1.65916 2.17570 2.50656 0.48674 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 18 2.02987 1.09882 2.58066 0.77727 18 u - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 19 2.75973 2.69845 3.28275 0.18410 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 20 2.86159 3.76056 0.12336 3.33513 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 21 2.75973 2.69845 3.28275 0.18410 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 22 3.03850 0.16650 3.61405 2.54432 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 23 3.31752 0.20785 3.13229 2.22742 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 24 0.28366 2.96170 1.97169 2.88200 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 25 2.68136 3.39174 0.14853 3.32674 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 26 2.71297 1.63877 2.48601 0.42129 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 27 2.75973 2.69845 3.28275 0.18410 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 28 3.03850 0.16650 3.61405 2.54432 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 29 2.75973 2.69845 3.28275 0.18410 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 30 2.86159 3.76056 0.12336 3.33513 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 31 3.03850 0.16650 3.61405 2.54432 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 32 2.75973 2.69845 3.28275 0.18410 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 33 0.58432 2.65285 1.24239 2.48445 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 34 3.52802 0.17553 3.23558 2.38287 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 35 3.11575 2.28576 2.77885 0.23339 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 36 2.51472 3.32160 0.17565 3.12118 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 37 0.13060 3.39787 3.10666 3.11824 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.47003 2.28798 1.29629 0.32728 1.27611 1.09861 0.40547 38 1.04247 1.91968 2.06366 0.98410 39 u - - - 1.38629 1.38629 1.38629 1.38629 0.05021 3.70975 3.70975 1.46634 0.26236 0.12514 2.14025 39 1.37169 1.30570 1.52572 1.35529 40 c - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 40 1.24836 2.07699 1.18718 1.26359 41 g - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 41 1.81196 1.65483 0.69521 1.92022 42 g - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 42 0.84923 2.09137 2.20904 1.08195 43 a - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 43 0.55513 2.55550 1.44569 2.18245 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 44 0.44899 2.39829 2.41341 1.70736 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 45 2.86159 3.76056 0.12336 3.33513 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 46 1.06595 2.05863 2.22842 0.86686 47 u - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 47 2.86159 3.76056 0.12336 3.33513 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 48 0.13060 3.39787 3.10666 3.11824 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 49 1.28726 2.00074 1.75970 0.87553 50 u - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 50 2.86159 3.76056 0.12336 3.33513 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 51 0.13060 3.39787 3.10666 3.11824 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 52 1.40237 2.01400 1.52757 0.90765 53 u - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 53 0.69886 1.83109 1.73654 1.79287 54 a - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 54 0.55513 2.55550 1.44569 2.18245 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.22586 1.69317 4.00454 0.76291 0.62794 1.09861 0.40547 55 0.90575 1.66829 2.14924 1.23575 58 a - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 56 1.75323 2.18374 0.97000 1.09338 59 g - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 57 2.75973 2.69845 3.28275 0.18410 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.14052 4.00454 2.18160 1.46634 0.26236 1.09861 0.40547 58 1.38188 1.97621 1.47124 0.96585 61 u - - - 1.38629 1.38629 1.38629 1.38629 0.04111 3.90513 3.90513 1.46634 0.26236 0.27998 1.40977 59 1.06595 2.05863 2.22842 0.86686 62 u - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 60 1.24270 2.66128 0.62120 2.26108 63 G - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 61 1.82763 2.11562 1.61369 0.65490 64 U - - - 1.38629 1.38629 1.38629 1.38629 0.14560 2.14333 4.00454 0.28637 1.39023 1.09861 0.40547 62 3.03850 0.16650 3.61405 2.54432 66 C - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 63 2.75973 2.69845 3.28275 0.18410 67 U - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 64 2.86159 3.76056 0.12336 3.33513 68 G - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 65 0.13060 3.39787 3.10666 3.11824 69 A - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 66 1.64898 2.89932 0.39913 2.50365 70 G - - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 67 2.33403 3.07053 0.22228 2.88224 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.03715 4.00454 4.00454 1.46634 0.26236 1.09861 0.40547 68 0.37314 2.83033 1.70730 2.64392 72 A - - > 1.38629 1.38629 1.38629 1.38629 0.35839 4.00454 1.26243 1.46634 0.26236 1.09861 0.40547 69 2.06492 2.63973 0.32654 2.52107 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.05087 3.69702 3.69702 1.46634 0.26236 0.55196 0.85760 70 0.36887 2.85657 1.70027 2.68264 74 A - - > 1.38629 1.38629 1.38629 1.38629 0.02087 3.87981 * 1.46634 0.26236 0.00000 * //