INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD113 ACC RF00181 DESC Small nucleolar RNA SNORD113/SNORD114 family STATES 226 NODES 71 CLEN 74 W 149 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 20:24:30 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00181/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 59 EFFN 9.704895 CKSUM 823253948 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.00 NC 35.90 EFP7GF -13.2020 0.71870 ECMLC 0.68198 -4.94425 3.22205 1600000 314696 0.003813 ECMGC 0.36700 -19.15603 -4.18769 1600000 97237 0.004114 ECMLI 0.61183 -3.97972 4.71093 1600000 244584 0.004906 ECMGI 0.39038 -14.52744 -1.21536 1600000 72274 0.005534 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 149 247 -8.630 -8.837 -0.033 -5.792 IL 1 1 2 1 4 1 34 151 250 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 33 150 249 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 2 34 149 248 -9.883 -0.006 -8.201 -0.778 -1.729 -2.234 1.537 D 4 2 3 5 3 0 27 147 246 -5.874 -0.587 -1.657 IL 5 5 3 5 3 1 31 149 248 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 109 - u - - MR 6 5 3 8 3 1 33 148 247 -9.899 -0.006 -8.217 0.338 -0.495 -0.994 0.609 D 7 5 3 8 3 0 24 146 244 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 30 148 247 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 108 - A - - MR 9 8 3 11 5 1 33 147 246 -8.573 -0.014 -8.389 -8.601 -9.493 1.526 -2.909 -0.429 -2.034 D 10 8 3 11 5 0 23 145 244 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 28 147 246 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 107 g c - - MP 12 11 3 16 6 2 32 146 245 -9.989 -9.928 -0.011 -8.705 -8.985 -9.380 -1.675 -0.691 -3.383 0.697 -3.801 -4.098 0.104 -3.878 -0.037 2.950 -4.028 0.483 -0.097 -1.506 -1.615 -1.729 ML 13 11 3 16 6 1 25 144 242 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 25 143 242 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 20 139 238 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 27 145 244 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 27 145 244 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 106 G C - - MP 18 17 6 22 6 2 31 144 243 -9.989 -9.928 -0.027 -6.262 -8.985 -9.380 -4.283 -2.967 -4.125 1.034 -1.571 -4.714 -0.310 -4.783 -4.520 3.349 -4.785 -0.016 -0.577 -2.004 -2.305 -3.097 ML 19 17 6 22 6 1 25 142 241 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 24 141 240 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 19 137 236 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 26 143 242 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 27 143 242 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 105 A U - - MP 24 23 6 28 6 2 30 142 241 -9.974 -9.913 -0.012 -8.690 -8.969 -9.364 -1.367 -3.759 -4.701 3.506 -5.442 -6.097 -1.551 -4.933 -4.638 0.041 -5.211 0.899 -1.696 -1.854 -3.268 -3.629 ML 25 23 6 28 6 1 24 140 239 -6.584 -6.930 -0.925 -1.339 -6.780 -4.309 0.855 -0.732 -0.461 -0.212 MR 26 23 6 28 6 1 23 139 238 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 19 136 235 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 26 141 240 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 26 141 240 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 104 c g - - MP 30 29 6 34 6 2 28 140 239 -9.989 -9.928 -0.011 -8.705 -8.985 -9.380 -2.731 -1.550 -1.526 0.388 -2.626 -3.744 2.261 -3.070 -2.927 0.672 -3.488 -1.240 1.246 -3.044 1.854 -1.488 ML 31 29 6 34 6 1 23 138 237 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 21 138 236 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 19 135 234 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 25 139 238 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 25 139 238 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 103 c g - - MP 36 35 6 40 4 2 26 138 237 -8.630 -8.837 -0.016 -7.251 -2.633 -2.783 -1.740 0.374 -1.373 -3.646 2.808 -0.873 -2.843 0.327 -2.177 -1.245 1.083 -2.952 0.624 -1.966 ML 37 35 6 40 4 1 22 137 236 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 4 1 20 136 235 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 39 35 6 40 4 0 18 134 233 -4.568 -4.250 -2.265 -0.520 IL 40 40 5 40 4 1 24 138 237 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 23 137 236 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - A - - - ML 42 41 6 44 3 1 24 136 235 -4.271 -0.082 -8.227 1.290 -2.277 -0.279 -0.930 D 43 41 6 44 3 0 17 133 232 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 23 136 235 -1.883 -0.541 -4.583 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 45 44 3 47 3 1 24 135 234 -9.573 -0.007 -8.227 1.067 -1.405 -0.227 -0.571 D 46 44 3 47 3 0 17 132 231 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 22 135 234 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - - - ML 48 47 3 50 3 1 23 134 233 -9.573 -0.007 -8.227 -3.197 -1.879 -3.935 1.829 D 49 47 3 50 3 0 16 131 230 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 21 134 233 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - - - ML 51 50 3 53 3 1 22 133 232 -9.573 -0.007 -8.227 -2.401 -2.006 1.764 -2.601 D 52 50 3 53 3 0 15 130 229 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 20 133 232 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - A - - - ML 54 53 3 56 3 1 21 132 231 -9.573 -0.007 -8.227 1.713 -2.838 -1.970 -1.612 D 55 53 3 56 3 0 15 129 228 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 19 132 231 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - U - - - ML 57 56 3 59 3 1 20 131 230 -9.573 -0.007 -8.227 -4.275 -3.895 -5.078 1.945 D 58 56 3 59 3 0 14 128 227 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 19 131 230 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - G - - - ML 60 59 3 62 3 1 19 130 229 -9.573 -0.007 -8.227 -1.852 -4.491 1.853 -3.936 D 61 59 3 62 3 0 13 127 226 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 18 130 229 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 63 62 3 65 3 1 18 129 228 -9.573 -0.007 -8.227 1.741 -2.050 -2.209 -2.330 D 64 62 3 65 3 0 13 126 225 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 17 129 228 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - c - - - ML 66 65 3 68 3 1 18 128 227 -9.573 -0.029 -5.748 -0.831 0.931 -0.340 -0.432 D 67 65 3 68 3 0 12 125 224 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 16 128 227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - c - - - ML 69 68 3 71 3 1 17 127 226 -9.551 -0.007 -8.205 0.202 0.262 -1.066 0.229 D 70 68 3 71 3 0 11 123 222 -6.691 -0.949 -1.083 IL 71 71 3 71 3 1 15 127 226 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - A - - - ML 72 71 3 74 3 1 17 126 225 -3.309 -0.159 -8.227 1.186 -1.237 -1.098 -0.264 D 73 71 3 74 3 0 10 114 213 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 17 137 236 -0.269 -2.619 -7.118 0.000 0.000 0.000 0.000 [ MATL 20 ] 34 - C - - - ML 75 74 3 77 3 1 16 71 95 -9.573 -0.007 -8.227 -0.924 1.208 -1.396 -0.352 D 76 74 3 77 3 0 9 69 93 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 14 73 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 35 - U - - - ML 78 77 3 80 3 1 15 70 94 -9.573 -0.007 -8.227 -2.265 -0.586 -2.312 1.548 D 79 77 3 80 3 0 8 68 92 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 13 72 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 36 - G - - - ML 81 80 3 83 3 1 14 69 93 -9.573 -0.025 -6.001 -1.011 -1.864 1.507 -1.368 D 82 80 3 83 3 0 8 67 91 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 13 71 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 37 - G - - - ML 84 83 3 86 3 1 14 68 92 -9.555 -0.007 -8.209 -1.314 -1.885 1.484 -0.914 D 85 83 3 86 3 0 7 66 90 -6.603 -2.116 -0.398 IL 86 86 3 86 3 1 12 70 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 38 - U - - - ML 87 86 3 89 3 1 14 67 91 -9.555 -0.007 -8.209 -1.819 -1.875 -1.062 1.568 D 88 86 3 89 3 0 6 65 89 -6.603 -2.116 -0.398 IL 89 89 3 89 3 1 11 69 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 39 - G - - - ML 90 89 3 92 3 1 13 66 90 -9.555 -0.007 -8.209 -0.407 -3.617 1.610 -3.152 D 91 89 3 92 3 0 6 64 88 -6.603 -2.116 -0.398 IL 92 92 3 92 3 1 11 68 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 40 - G - - - ML 93 92 3 95 3 1 12 65 89 -2.408 -0.307 -8.209 -2.243 -2.322 1.743 -2.043 D 94 92 3 95 3 0 5 63 86 -6.603 -2.116 -0.398 IL 95 95 3 95 3 1 11 66 89 -1.647 -0.597 -5.653 0.000 0.000 0.000 0.000 [ MATL 27 ] 44 - C - - - ML 96 95 3 98 3 1 11 64 87 -9.555 -0.019 -6.395 -1.849 1.338 -2.474 0.022 D 97 95 3 98 3 0 5 62 86 -6.603 -1.035 -0.995 IL 98 98 3 98 3 1 9 65 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 45 - g - - - ML 99 98 3 101 3 1 11 63 86 -9.561 -0.007 -8.215 0.370 -1.337 0.793 -0.786 D 100 98 3 101 3 0 4 61 85 -6.481 -1.994 -0.439 IL 101 101 3 101 3 1 9 64 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 46 - U - - - ML 102 101 3 104 3 1 10 62 85 -9.561 -0.007 -8.215 -2.475 -1.421 -2.235 1.693 D 103 101 3 104 3 0 3 60 84 -6.481 -1.176 -0.872 IL 104 104 3 104 3 1 8 63 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 47 - a - - - ML 105 104 3 107 3 1 9 61 84 -9.573 -0.007 -8.227 0.808 -0.058 -0.832 -0.461 D 106 104 3 107 3 0 2 59 83 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 7 62 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 48 - U - - - ML 108 107 3 110 3 1 8 60 83 -9.573 -0.007 -8.227 -2.521 -1.773 -2.032 1.718 D 109 107 3 110 3 0 1 58 82 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 6 61 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 49 - G - - - ML 111 110 3 113 3 1 8 59 82 -4.404 -0.075 -8.227 -1.734 -3.681 1.788 -2.570 D 112 110 3 113 3 0 1 57 80 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 6 59 83 -1.848 -0.557 -4.548 0.000 0.000 0.000 0.000 [ MATL 33 ] 51 - A - - - ML 114 113 3 116 3 1 7 57 81 -9.573 -0.007 -8.227 1.873 -4.086 -2.245 -3.903 D 115 113 3 116 3 0 0 56 79 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 5 59 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 52 - G - - - ML 117 116 3 119 3 1 6 56 80 -9.573 -0.007 -8.227 -0.233 -1.347 1.197 -1.110 D 118 116 3 119 3 0 0 55 78 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 4 58 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 53 - U - - - ML 120 119 3 122 3 1 5 55 79 -9.573 -0.007 -8.227 -1.039 -2.310 -2.103 1.622 D 121 119 3 122 3 0 0 54 77 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 4 57 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 54 - C - - - ML 123 122 3 125 3 1 5 54 78 -9.573 -0.007 -8.227 -1.987 1.363 -1.524 -0.273 D 124 122 3 125 3 0 0 53 76 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 3 56 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 55 - A - - - ML 126 125 3 128 3 1 4 53 77 -9.573 -0.007 -8.227 1.280 -2.018 -0.956 -0.305 D 127 125 3 128 3 0 0 52 75 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 55 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 56 - U - - - ML 129 128 3 131 3 1 3 52 76 -9.573 -0.045 -5.094 -0.549 -1.075 -1.489 1.314 D 130 128 3 131 3 0 0 51 74 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 2 54 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 57 - a - - - ML 132 131 3 134 3 1 4 51 75 -9.535 -0.007 -8.189 0.430 -0.653 0.220 -0.230 D 133 131 3 134 3 0 0 49 73 -6.966 -2.479 -0.299 IL 134 134 3 134 3 1 2 53 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 58 - c - - - ML 135 134 3 137 3 1 3 50 74 -9.535 -0.007 -8.189 -0.374 0.222 0.105 -0.020 D 136 134 3 137 3 0 0 49 73 -6.966 -0.733 -1.358 IL 137 137 3 137 3 1 1 52 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 59 - A - - - ML 138 137 3 140 3 1 3 49 73 -9.573 -0.007 -8.227 1.364 -1.735 -1.515 -0.367 D 139 137 3 140 3 0 0 48 71 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 51 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 60 - U - - - ML 141 140 3 143 3 1 2 48 72 -9.573 -0.007 -8.227 -1.897 0.148 -1.961 1.243 D 142 140 3 143 3 0 0 47 70 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 50 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 61 - g - - - ML 144 143 3 146 3 1 1 47 71 -9.573 -0.022 -6.164 -0.324 -0.990 0.951 -0.388 D 145 143 3 146 3 0 0 46 69 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 49 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 62 - A - - - ML 147 146 3 149 3 1 2 46 70 -9.558 -0.007 -8.212 1.127 -1.157 -0.966 -0.225 D 148 146 3 149 3 0 0 45 69 -6.552 -1.091 -0.944 IL 149 149 3 149 3 1 1 48 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 63 - U - - - ML 150 149 3 152 3 1 1 45 69 -9.573 -0.007 -8.227 -4.275 -3.895 -5.078 1.945 D 151 149 3 152 3 0 0 44 67 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 47 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 64 - G - - - ML 153 152 3 155 3 1 1 44 68 -9.573 -0.007 -8.227 -4.233 -5.764 1.962 -4.966 D 154 152 3 155 3 0 0 43 66 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 46 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 65 - A - - - ML 156 155 3 158 3 1 1 43 67 -4.490 -0.071 -8.227 1.687 -3.626 -0.725 -3.400 D 157 155 3 158 3 0 0 41 65 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 44 68 -1.827 -0.568 -4.527 0.000 0.000 0.000 0.000 [ MATL 48 ] 67 - a - - - ML 159 158 3 161 3 1 1 42 66 -9.573 -0.007 -8.227 0.832 -0.547 -0.817 -0.048 D 160 158 3 161 3 0 0 40 64 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 44 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 68 - U - - - ML 162 161 3 164 3 1 1 41 65 -9.573 -0.007 -8.227 -1.968 -0.593 -3.140 1.569 D 163 161 3 164 3 0 0 39 63 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 43 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 69 - A - - - ML 165 164 3 167 3 1 1 40 64 -9.573 -0.007 -8.227 1.470 -1.902 -0.711 -1.510 D 166 164 3 167 3 0 0 38 62 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 42 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 70 - c - - - ML 168 167 3 170 3 1 1 39 63 -9.573 -0.203 -2.944 0.068 0.904 -2.311 -0.184 D 169 167 3 170 3 0 0 37 61 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 41 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 71 - a - - - ML 171 170 3 173 3 1 1 38 62 -9.378 -0.481 -1.825 0.981 -0.297 -1.465 -0.233 D 172 170 3 173 3 0 0 35 59 -8.367 -3.880 -0.106 IL 173 173 3 173 3 1 1 40 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 72 - A - - - ML 174 173 3 176 3 1 1 38 61 -0.661 -1.632 -4.472 1.011 -0.441 -1.053 -0.384 D 175 173 3 176 3 0 0 34 58 -3.918 -1.558 -0.751 IL 176 176 3 176 3 1 1 37 61 -1.117 -1.111 -3.717 0.000 0.000 0.000 0.000 [ MATL 54 ] 87 - G - - - ML 177 176 3 179 3 1 1 29 48 -9.046 -0.010 -7.700 -0.374 -0.932 1.227 -1.463 D 178 176 3 179 3 0 0 27 46 -9.443 -0.696 -1.391 IL 179 179 3 179 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 88 - U - - - ML 180 179 3 182 3 1 1 28 46 -9.411 -0.008 -8.065 -0.850 -1.176 -0.934 1.310 D 181 179 3 182 3 0 0 26 45 -8.174 -3.687 -0.122 IL 182 182 3 182 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 89 - G - - - ML 183 182 3 185 3 1 1 27 45 -9.411 -0.008 -8.065 -0.175 -1.491 1.288 -1.661 D 184 182 3 185 3 0 0 26 44 -8.174 -0.497 -1.795 IL 185 185 3 185 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 90 - U - - - ML 186 185 3 188 3 1 1 26 44 -9.549 -0.007 -8.203 -0.822 -1.234 -2.722 1.515 D 187 185 3 188 3 0 0 25 44 -6.736 -2.249 -0.358 IL 188 188 3 188 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 91 - C - - - ML 189 188 3 191 3 1 1 24 43 -9.549 -0.007 -8.203 -1.038 1.304 -1.610 -0.483 D 190 188 3 191 3 0 0 24 43 -6.736 -0.908 -1.128 IL 191 191 3 191 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 92 - U - - - ML 192 191 3 194 3 1 1 23 42 -9.573 -0.007 -8.227 -2.556 -1.427 -2.517 1.715 D 193 191 3 194 3 0 0 23 42 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 93 - G - - - ML 195 194 3 197 3 1 1 22 41 -9.573 -0.007 -8.227 -0.132 -3.532 1.527 -3.078 D 196 194 3 197 3 0 0 22 41 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 94 - G - - - ML 198 197 3 200 3 1 1 21 40 -9.573 -0.007 -8.227 -0.460 -1.392 1.251 -0.966 D 199 197 3 200 3 0 0 21 40 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 95 - A - - - ML 201 200 3 203 3 1 1 20 38 -9.573 -0.007 -8.227 1.669 -3.614 -0.640 -3.382 D 202 200 3 203 3 0 0 20 38 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 96 - A - - - ML 204 203 3 206 3 1 1 19 37 -9.573 -0.007 -8.227 1.845 -3.520 -3.563 -2.084 D 205 203 3 206 3 0 0 19 37 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 97 - c - - - ML 207 206 3 209 3 1 1 18 36 -9.573 -0.007 -8.227 -0.617 0.979 -0.295 -0.831 D 208 206 3 209 3 0 0 18 36 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 98 - U - - - ML 210 209 3 212 3 1 1 16 35 -9.573 -0.007 -8.227 -2.168 -2.844 -3.708 1.833 D 211 209 3 212 3 0 0 17 35 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 99 - C - - - ML 213 212 3 215 3 1 1 15 34 -9.573 -0.007 -8.227 -4.273 1.906 -4.889 -2.583 D 214 212 3 215 3 0 0 16 34 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 100 - U - - - ML 216 215 3 218 3 1 1 14 32 -9.573 -0.007 -8.227 -3.153 -1.721 -3.891 1.814 D 217 215 3 218 3 0 0 15 33 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 101 - G - - - ML 219 218 3 221 3 1 1 12 30 -9.573 -0.007 -8.227 -2.555 -4.945 1.906 -4.323 D 220 218 3 221 3 0 0 13 32 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 102 - A - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 1.964 -5.244 -4.683 -4.943 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD113 ACC RF00181 DESC Small nucleolar RNA SNORD113/SNORD114 family LENG 74 MAXL 203 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 20:24:30 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00181/CM NSEQ 59 EFFN 11.411804 CKSUM 823253948 STATS LOCAL MSV -8.2724 0.71870 STATS LOCAL VITERBI -9.3110 0.71870 STATS LOCAL FORWARD -3.6337 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29964 1.75552 1.34253 1.22632 1.38629 1.38629 1.38629 1.38629 0.02502 5.01315 4.01418 1.46634 0.26236 0.00000 * 1 1.94841 2.66563 3.02007 0.30226 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.01354 5.00168 5.00168 1.46634 0.26236 0.55188 0.85771 2 1.83248 2.69026 0.40877 2.22886 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 3 1.98470 2.61716 0.33351 2.61510 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 4 0.26993 4.00542 1.73299 3.17979 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 5 2.05479 1.11815 2.02803 0.88333 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 6 2.22331 0.63404 2.15704 1.40389 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 7 0.47180 3.10697 1.57575 2.08317 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06686 2.84688 5.01315 0.21529 1.64149 1.09861 0.40547 8 0.62802 2.41287 1.53933 1.81849 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 9 3.74503 2.72515 4.25535 0.10910 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 10 3.17854 2.78124 0.15238 3.27722 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 11 0.18670 3.48120 2.80094 2.54105 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 12 4.55716 4.27667 5.11903 0.03083 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 13 2.69786 4.66970 0.09497 4.27734 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 14 0.16763 2.84252 2.97921 3.09612 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 15 2.02313 0.71148 1.61261 1.72891 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02927 5.01315 3.80800 1.46634 0.26236 1.09861 0.40547 16 1.24604 1.18833 2.15370 1.23245 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01360 4.99749 4.99749 1.46634 0.26236 0.46956 0.98157 17 0.54444 2.28605 2.17695 1.58582 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12175 2.22580 5.01315 2.25447 0.11085 1.09861 0.40547 18 2.07472 0.52383 2.37644 1.66452 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 19 3.11480 1.79873 3.05342 0.29718 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 20 2.13051 2.71791 0.32510 2.37782 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02613 5.01315 3.95566 1.46634 0.26236 1.09861 0.40547 21 2.37058 2.74098 0.34002 2.03786 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01356 5.00058 5.00058 1.46634 0.26236 1.58497 0.22936 22 2.77140 2.77786 2.12103 0.28058 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01356 5.00058 5.00058 1.46634 0.26236 1.58497 0.22936 23 1.67174 4.04712 0.26060 3.72894 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01356 5.00058 5.00058 1.46634 0.26236 1.58497 0.22936 24 3.05706 3.02379 0.16686 2.84660 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.22799 1.62387 5.00058 0.38842 1.13359 1.58497 0.22936 25 2.77075 0.44054 3.17329 1.37900 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02237 5.00058 4.17424 1.46634 0.26236 0.52748 0.89182 26 1.12620 2.35581 0.81389 1.98202 45 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01351 5.00457 5.00457 1.46634 0.26236 1.45511 0.26576 27 3.25234 2.40488 2.97367 0.19854 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01351 5.00457 5.00457 1.46634 0.26236 0.62877 0.76196 28 0.81162 1.41321 1.97992 1.74629 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 29 3.28356 2.66973 2.81670 0.18220 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 30 2.62523 4.05150 0.13925 3.21468 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06190 2.93039 5.01315 0.23289 1.57138 1.09861 0.40547 31 0.08071 4.37983 2.97759 4.26199 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 32 1.56291 2.35018 0.53395 2.21787 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 33 2.13690 3.12424 2.90219 0.24449 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 34 2.90370 0.41962 2.45575 1.59907 54 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 35 0.47760 2.90661 2.07251 1.61346 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 36 1.79050 2.16887 2.45699 0.45709 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04050 5.01315 3.40993 1.46634 0.26236 1.09861 0.40547 37 1.08247 1.84856 1.21843 1.56981 57 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01375 4.98641 4.98641 1.46634 0.26236 1.94148 0.15489 38 1.67938 1.21279 1.29635 1.41627 58 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01375 4.98641 4.98641 1.46634 0.26236 0.33825 1.24833 39 0.42019 2.66886 2.49125 1.65580 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 40 2.85168 1.27382 2.80521 0.50750 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 41 1.63635 2.09333 0.70259 1.67808 61 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02439 5.01315 4.04849 1.46634 0.26236 1.09861 0.40547 42 0.58609 2.22615 2.07875 1.55840 62 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01354 5.00230 5.00230 1.46634 0.26236 0.56658 0.83809 43 4.55716 4.27667 5.11903 0.03083 63 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 44 4.48069 5.56670 0.02221 4.98892 64 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 45 0.20861 4.07813 1.88395 3.94459 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05896 2.98367 5.01315 0.24482 1.52716 1.09861 0.40547 46 0.79390 1.77228 1.96982 1.43340 67 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 47 2.84652 1.80271 3.71640 0.28398 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 48 0.34845 2.77543 1.88727 2.52060 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 49 1.34106 0.73373 3.12314 1.54039 70 c - - _ 1.38629 1.38629 1.38629 1.38629 0.15335 5.01315 1.99860 1.46634 0.26236 1.09861 0.40547 50 0.68739 1.58868 2.46326 1.57137 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.31268 4.87518 1.34369 1.46634 0.26236 3.10817 0.04571 51 0.66335 1.69212 2.15389 1.68892 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.86821 0.63326 3.00699 0.78237 0.61124 1.00282 0.45704 52 1.68127 2.03913 0.50404 2.53033 87 G - - _ 1.38629 1.38629 1.38629 1.38629 0.11039 4.73063 2.34657 1.46634 0.26236 0.23631 1.55845 53 2.02803 2.25027 2.04191 0.45688 88 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01503 4.89865 4.89865 1.46634 0.26236 2.95853 0.05329 54 1.52148 2.45082 0.47070 2.64756 89 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01503 4.89865 4.89865 1.46634 0.26236 0.27169 1.43587 55 1.98137 2.28514 3.42346 0.31778 90 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01362 4.99582 4.99582 1.46634 0.26236 1.71998 0.19732 56 2.15430 0.45803 2.53116 1.76071 91 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01362 4.99582 4.99582 1.46634 0.26236 0.44338 1.02683 57 3.30353 2.40611 3.18328 0.18437 92 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 58 1.47696 3.99101 0.31739 3.68320 93 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 59 1.73072 2.38308 0.49694 2.10221 94 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 60 0.22051 4.07263 1.82432 3.93582 95 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 61 0.09909 3.96904 4.01539 2.85757 96 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 62 1.85716 0.67736 1.58113 2.03877 97 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 63 2.93773 3.48452 4.08924 0.10581 98 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 64 4.50994 0.05890 4.90826 3.24889 99 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 65 3.71662 2.60883 4.22727 0.11938 100 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 66 3.20487 4.99285 0.05969 4.54797 101 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 67 0.02040 5.22070 4.82419 4.99729 102 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 68 1.79165 2.41123 0.51473 1.92451 103 G - - > 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 69 1.77812 2.05940 0.55051 2.06469 104 G - - > 1.38629 1.38629 1.38629 1.38629 0.02964 5.01315 3.79178 1.46634 0.26236 1.09861 0.40547 70 3.15342 2.63989 3.85992 0.14519 105 U - - > 1.38629 1.38629 1.38629 1.38629 0.01361 4.99712 4.99712 1.46634 0.26236 0.46351 0.99174 71 2.70510 0.38940 2.76467 1.64673 106 C - - > 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 72 1.97008 0.55751 2.49206 1.58386 107 C - - > 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 73 0.31391 3.56645 1.68058 2.90243 108 A - - : 1.38629 1.38629 1.38629 1.38629 0.01339 5.01315 5.01315 1.46634 0.26236 1.09861 0.40547 74 1.14786 1.73996 2.10209 0.95462 109 u - - : 1.38629 1.38629 1.38629 1.38629 0.00672 5.00648 * 1.46634 0.26236 0.00000 * //