INFERNAL1/a [1.1.5 | Sep 2023] NAME HIV-1_DIS ACC RF00175 DESC Human immunodeficiency virus type 1 dimerisation initiation site STATES 124 NODES 31 CLEN 40 W 54 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 19:25:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00175/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 70 EFFN 9.147339 CKSUM 2650015423 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.10 NC 34.60 EFP7GF -15.6323 0.71972 ECMLC 0.54751 -8.86618 3.03614 1600000 811523 0.001479 ECMGC 0.42741 -20.68570 -3.89734 1600000 522804 0.000765 ECMLI 0.55096 -7.97822 3.54674 1600000 686888 0.001747 ECMGI 0.44033 -17.90361 -2.21919 1600000 399413 0.001001 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 54 73 -8.557 -8.764 -0.017 -7.178 IL 1 1 2 1 4 1 3 59 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 3 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 4 54 73 -9.502 -0.007 -8.156 -2.675 -4.944 1.911 -4.314 D 4 2 3 5 3 0 0 53 72 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 2 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 3 53 72 -6.656 -0.019 -8.156 -4.147 -5.665 1.960 -4.880 D 7 5 3 8 3 0 0 52 70 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 2 55 74 -1.523 -0.741 -4.223 0.000 0.000 0.000 0.000 [ MATL 3 ] 4 - A - - - ML 9 8 3 11 3 1 2 52 71 -9.829 -0.032 -5.582 1.861 -3.960 -2.124 -3.771 D 10 8 3 11 3 0 0 51 69 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 47 - G - - MR 12 11 3 14 3 1 3 51 70 -9.804 -0.007 -8.122 -1.506 -0.630 1.477 -2.195 D 13 11 3 14 3 0 0 49 68 -6.877 -2.055 -0.413 IR 14 14 3 14 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 46 - g - - MR 15 14 3 17 5 1 2 50 69 -8.481 -0.029 -6.256 -8.508 -9.400 0.617 -2.142 0.961 -1.774 D 16 14 3 17 5 0 0 49 67 -5.645 -0.548 -3.271 -4.702 -2.697 IR 17 17 3 17 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 45 C G - - MP 18 17 3 22 6 2 3 49 68 -9.931 -3.623 -0.133 -8.647 -8.927 -9.322 -8.163 -8.261 -3.879 -4.459 -2.234 -7.081 3.941 -7.143 -7.816 -4.341 -7.080 -6.373 -2.826 -8.163 -3.969 -6.625 ML 19 17 3 22 6 1 1 48 66 -6.467 -6.813 -1.039 -1.222 -6.663 -4.192 0.125 0.162 -0.555 0.151 MR 20 17 3 22 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 1 49 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 1 48 67 -3.292 -0.248 -6.803 -4.971 -6.076 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 43 U A - - MP 24 23 6 28 6 2 3 47 65 -9.941 -9.880 -0.012 -8.657 -8.937 -9.332 -6.415 -6.553 -5.807 -2.751 -4.211 -6.008 0.640 -5.102 -5.880 -2.711 -6.041 -4.716 3.766 -6.303 -1.895 -4.611 ML 25 23 6 28 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 1 46 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 47 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 42 C G - - MP 30 29 6 34 6 2 3 45 63 -7.298 -9.880 -0.020 -8.657 -8.937 -9.332 -7.338 -7.517 -6.515 -3.687 -2.667 -6.576 3.908 -6.058 -6.841 -3.601 -6.610 -5.722 -1.800 -7.234 -1.885 -5.635 ML 31 29 6 34 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 45 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 45 63 -2.708 -2.971 -0.677 -4.626 -5.402 -5.063 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 45 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 41 G C - - MP 36 35 6 40 4 2 2 43 61 -8.557 -8.764 -0.017 -7.178 -6.432 -2.349 -6.679 -1.112 -7.561 -5.505 -2.442 -7.202 -5.576 3.851 -5.794 -1.946 -2.739 -2.632 -4.575 -5.639 ML 37 35 6 40 4 1 1 44 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 4 1 1 44 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 39 35 6 40 4 0 0 43 62 -4.568 -4.250 -2.265 -0.520 IL 40 40 5 40 4 1 1 46 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 1 45 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 42 41 6 44 3 1 1 40 59 -9.829 -0.007 -8.147 -2.853 -5.051 1.920 -4.401 D 43 41 6 44 3 0 0 39 57 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 40 - G - - MR 45 44 3 47 3 1 1 39 58 -9.829 -0.007 -8.147 -3.375 -3.503 1.908 -4.017 D 46 44 3 47 3 0 0 38 56 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 39 - G - - MR 48 47 3 50 3 1 1 38 57 -9.829 -0.007 -8.147 -4.147 -5.665 1.960 -4.880 D 49 47 3 50 3 0 0 37 55 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 38 - A - - MR 51 50 3 53 5 1 1 37 56 -8.505 -0.015 -8.321 -8.533 -9.425 1.910 -3.337 -3.814 -3.813 D 52 50 3 53 5 0 0 36 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 1 38 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 37 C G - - MP 54 53 3 58 6 2 2 36 55 -9.941 -9.880 -0.012 -8.657 -8.937 -9.332 -6.457 -6.641 -5.812 -2.818 -4.199 -5.983 3.821 -5.130 -5.926 -2.755 -6.026 -4.854 0.082 -6.336 -1.924 -4.723 ML 55 53 3 58 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 1 35 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 36 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 36 U A - - MP 60 59 6 64 6 2 2 34 53 -9.941 -9.880 -0.012 -8.657 -8.937 -9.332 -6.114 -6.246 -5.577 -2.380 -4.015 -5.817 1.022 -4.895 -5.641 -2.280 -5.829 -4.364 3.616 -6.032 0.003 -4.432 ML 61 59 6 64 6 1 1 33 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 33 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 34 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 35 U A - - MP 66 65 6 70 6 2 2 32 51 -9.941 -9.880 -0.012 -8.657 -8.937 -9.332 -6.317 -6.475 -5.746 -2.635 -4.163 -5.962 0.521 -5.052 -5.815 -2.551 -5.990 -4.644 3.699 -6.212 -0.037 -4.547 ML 67 65 6 70 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 34 G C - - MP 72 71 6 76 6 2 2 30 49 -9.941 -9.880 -0.020 -7.000 -8.937 -9.332 -6.963 -4.361 -7.596 -0.581 -8.391 -5.742 -3.176 -7.782 -5.719 3.881 -5.972 -2.171 -3.484 -5.992 -5.392 -6.432 ML 73 71 6 76 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 33 C G - - MP 78 77 6 82 6 2 2 28 47 -9.933 -9.873 -0.012 -8.649 -8.929 -9.324 -5.813 -5.831 -5.399 -1.877 -3.920 -5.737 3.655 -4.765 -5.427 -1.728 -3.826 -3.769 0.679 -5.798 -0.303 -4.211 ML 79 77 6 82 6 1 1 27 45 -6.422 -6.768 -1.089 -1.177 -6.618 -4.147 0.166 0.086 -0.506 0.153 MR 80 77 6 82 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 32 u a - - MP 84 83 6 88 6 2 2 26 45 -5.399 -9.880 -0.062 -8.657 -6.204 -9.332 -5.331 -5.293 -5.086 -1.389 -3.788 -5.561 1.021 -4.568 -5.085 -0.008 -5.420 -3.197 2.645 -5.410 2.553 -3.898 ML 85 83 6 88 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 26 44 -3.061 -3.324 -0.501 -4.980 -5.756 -5.416 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 31 G C - - MP 90 89 6 94 4 2 2 24 43 -3.612 -5.317 -0.331 -3.347 -5.193 -3.572 -5.148 0.559 -6.282 -5.314 -1.341 -5.712 -2.514 3.605 -5.343 0.067 -1.600 -4.852 -3.370 -4.067 ML 91 89 6 94 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 23 41 -5.158 -4.187 -1.135 -1.115 0.015 0.349 -0.678 0.126 D 93 89 6 94 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 24 42 -2.712 -3.396 -0.443 -5.881 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 24 43 -1.640 -0.667 -4.340 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - A - - - ML 96 95 6 98 3 1 1 21 40 -9.370 -0.008 -8.024 1.497 -0.916 -1.979 -1.345 D 97 95 6 98 3 0 0 21 39 -7.917 -0.527 -1.729 IL 98 98 3 98 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - A - - - ML 99 98 3 101 3 1 1 20 39 -9.484 -0.007 -8.138 1.634 -3.476 -0.516 -3.215 D 100 98 3 101 3 0 0 20 38 -6.590 -1.050 -0.981 IL 101 101 3 101 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - - - ML 102 101 3 104 3 1 1 19 38 -9.502 -0.007 -8.156 -2.021 -3.957 1.831 -2.938 D 103 101 3 104 3 0 0 19 38 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - U - - - ML 105 104 3 107 3 1 1 18 36 -9.502 -0.007 -8.156 -1.867 0.401 -2.236 1.133 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - G - - - ML 108 107 3 110 3 1 1 17 35 -9.502 -0.007 -8.156 -4.147 -5.665 1.960 -4.880 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - C - - - ML 111 110 3 113 3 1 1 16 34 -6.998 -0.016 -8.156 -4.294 1.915 -4.898 -2.790 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 19 37 -1.503 -0.754 -4.203 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 114 113 3 116 3 1 1 14 32 -9.502 -0.007 -8.156 1.302 -3.443 0.404 -3.080 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 117 116 3 119 3 1 1 12 30 -9.502 -0.066 -4.535 -2.001 1.788 -3.959 -2.098 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - a - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 0.875 -1.437 -0.465 0.100 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME HIV-1_DIS ACC RF00175 DESC Human immunodeficiency virus type 1 dimerisation initiation site LENG 40 MAXL 100 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 19:25:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00175/CM NSEQ 70 EFFN 14.308472 CKSUM 2650015423 STATS LOCAL MSV -6.5210 0.71972 STATS LOCAL VITERBI -7.2913 0.71972 STATS LOCAL FORWARD -3.9295 0.71972 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.52459 1.42503 0.90324 1.99118 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 0.00000 * 1 3.37388 5.31799 0.04823 4.83723 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 2 4.69591 5.81576 0.01775 5.20639 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01985 4.24283 5.24316 0.62186 0.76991 1.09861 0.40547 3 0.07759 4.58042 2.93816 4.47027 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 4 4.17411 0.04259 5.04736 3.91798 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 5 4.56791 2.43936 4.54163 0.11457 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 6 5.06975 0.04539 5.07078 3.44781 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.01923 4.28589 5.24316 0.64564 0.74303 1.09861 0.40547 7 3.47285 4.85647 0.05933 3.97421 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 8 3.51714 5.39433 0.04259 4.89673 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 9 4.77782 0.09790 4.67920 2.58282 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 10 4.64840 2.21373 4.53844 0.13876 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 11 4.70578 2.56932 4.61325 0.10043 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 12 3.18154 5.10261 0.05544 5.06193 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 13 4.27632 0.18787 3.96960 1.97686 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 14 4.12368 2.30030 2.82242 0.19343 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.06713 3.18629 3.74647 0.23862 1.54984 1.09861 0.40547 15 2.44659 4.00269 0.13483 3.84993 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.20777 2.43621 2.30148 0.11879 2.18920 0.37000 1.17355 16 0.29731 2.03966 3.00988 2.55345 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01172 5.14555 5.14555 1.46634 0.26236 0.24672 1.52031 17 0.23165 4.30916 1.72455 4.19463 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01077 5.22984 5.22984 1.46634 0.26236 0.45155 1.01236 18 2.90029 4.47790 0.09889 3.58302 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 19 3.09433 1.07123 3.15855 0.56278 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 20 4.69591 5.81576 0.01775 5.20639 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 21 4.78963 0.04429 5.13482 3.53619 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01758 4.41121 5.24316 0.71972 0.66726 1.09861 0.40547 22 0.45967 4.38471 1.07502 4.21663 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 23 2.84708 0.11809 4.52831 3.15657 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05418 5.24316 3.04804 1.46634 0.26236 1.09861 0.40547 24 0.73379 2.58695 1.71874 1.32662 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03587 3.51599 5.20007 0.33719 1.25098 0.20105 1.70303 25 3.50196 0.22627 3.78123 1.90001 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 26 0.86770 2.87624 0.68504 3.92876 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.01923 5.24316 4.28589 1.46634 0.26236 1.09861 0.40547 27 2.38035 4.37650 0.12896 4.14102 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01071 5.23464 5.23464 1.46634 0.26236 0.56978 0.83390 28 5.13845 0.06332 5.00094 3.02084 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 29 0.16939 4.75435 1.99689 4.46955 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 30 0.20756 4.68458 1.79528 4.41300 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 31 2.73029 4.82983 0.08752 4.54575 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 32 0.04510 3.85968 4.48079 4.44827 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 33 4.69591 5.81576 0.01775 5.20639 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 34 4.21618 3.90927 0.04529 4.65949 40 G - - - 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 35 4.90777 0.04479 4.75225 3.58343 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 36 3.65142 5.24147 0.03885 4.98243 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.01062 5.24316 5.24316 1.46634 0.26236 1.09861 0.40547 37 0.12407 4.73659 2.34342 4.43013 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.16002 2.02718 4.12489 0.07839 2.58504 1.09861 0.40547 38 3.24521 5.47878 0.04959 5.25047 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03025 5.23222 3.71106 1.46634 0.26236 0.50301 0.92813 39 0.94125 3.11360 0.66733 2.95000 46 G - - : 1.38629 1.38629 1.38629 1.38629 0.01083 5.22407 5.22407 1.46634 0.26236 1.88366 0.16491 40 2.68164 1.75689 0.32539 3.30442 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.00543 5.21868 * 1.46634 0.26236 0.00000 * //