INFERNAL1/a [1.1.5 | Sep 2023] NAME s2m ACC RF00164 DESC Coronavirus 3' stem-loop II-like motif (s2m) STATES 133 NODES 33 CLEN 43 W 57 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 15 11:44:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/OK_update/RF00164/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 39 EFFN 7.945679 CKSUM 2134133334 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 51.60 NC 47.70 EFP7GF -17.4795 0.71950 ECMLC 0.68833 -3.99594 4.17885 1600000 333383 0.003599 ECMGC 0.43982 -19.45383 -5.23048 1600000 208401 0.001919 ECMLI 0.69206 -2.87532 4.98272 1600000 276038 0.004347 ECMGI 0.45764 -16.63727 -3.53620 1600000 160655 0.002490 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 57 76 -8.386 -8.593 -0.019 -7.007 IL 1 1 2 1 4 1 9 62 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 3 - c - - - ML 3 2 3 5 3 1 9 57 76 -9.667 -0.007 -7.984 -0.630 0.397 0.365 -0.418 D 4 2 3 5 3 0 2 56 75 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 6 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 46 - a - - MR 6 5 3 8 5 1 9 56 75 -8.347 -0.016 -8.163 -8.375 -9.266 0.311 0.113 -0.735 0.108 D 7 5 3 8 5 0 1 55 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 5 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 4 45 g c - - MP 9 8 3 13 6 2 9 55 74 -9.832 -9.771 -0.034 -5.862 -8.827 -9.222 -1.919 -1.627 -2.886 1.988 -3.042 -3.670 0.920 -3.286 -3.032 2.343 -3.530 -0.611 1.076 -2.951 -1.039 -1.144 ML 10 8 3 13 6 1 2 54 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 3 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 4 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 4 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 5 44 g c - - MP 15 14 6 19 6 2 9 53 72 -9.811 -9.750 -0.013 -8.526 -8.806 -9.201 -4.107 -3.033 -4.036 2.054 -4.516 -4.764 0.072 -4.446 -4.262 2.714 -4.633 -0.690 1.435 -4.026 -1.929 -2.973 ML 16 14 6 19 6 1 1 51 70 -6.649 -6.995 -1.710 -1.404 -6.845 -1.786 0.912 -0.782 -0.518 -0.254 MR 17 14 6 19 6 1 2 52 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 43 u a - - MP 21 20 6 25 6 2 8 51 70 -9.811 -9.750 -0.013 -8.526 -8.806 -9.201 -3.660 -3.487 -3.734 1.639 -3.090 -4.558 1.791 -3.625 -3.715 1.233 -4.234 -1.385 2.392 -3.885 -0.738 -2.610 ML 22 20 6 25 6 1 2 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 48 67 -9.541 -8.239 -4.036 -1.614 -4.735 -0.811 IL 25 25 5 25 6 1 3 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 7 42 G C - - MP 27 26 6 31 6 2 6 49 68 -9.811 -9.750 -0.013 -8.526 -8.806 -9.201 -4.315 -3.006 -4.180 1.639 -5.020 -4.775 0.872 -4.735 -4.478 3.156 -4.773 -0.643 -0.517 -4.071 -2.231 -3.120 ML 28 26 6 31 6 1 2 49 68 -6.649 -6.995 -0.869 -1.404 -6.845 -4.375 0.084 -0.796 0.610 -0.257 MR 29 26 6 31 6 1 2 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 41 C G - - MP 33 32 6 37 4 2 5 47 66 -8.386 -8.593 -0.019 -7.007 -6.102 -6.274 -5.505 -2.431 -3.907 -5.705 3.744 -4.807 -5.589 -2.351 -5.740 -4.459 -0.553 -5.991 0.290 -4.385 ML 34 32 6 37 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 1 48 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 0 47 66 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 2 50 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 2 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - C - - - ML 39 38 6 41 3 1 4 45 63 -9.335 -0.008 -7.989 -4.506 1.942 -5.109 -3.579 D 40 38 6 41 3 0 0 44 63 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - G - - - ML 42 41 3 44 3 1 3 44 62 -9.335 -0.008 -7.989 -2.157 -4.445 1.872 -3.871 D 43 41 3 44 3 0 0 43 62 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - a - - - ML 45 44 3 47 3 1 3 43 61 -9.335 -0.008 -7.989 0.624 0.066 -0.394 -0.619 D 46 44 3 47 3 0 0 42 60 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - G - - - ML 48 47 3 50 3 1 2 42 60 -9.667 -0.007 -7.984 -3.129 -4.234 1.910 -3.743 D 49 47 3 50 3 0 0 40 59 -5.620 -0.734 -1.403 IL 50 50 3 50 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 40 - A - - MR 51 50 3 53 3 1 2 41 59 -9.667 -0.007 -7.984 1.954 -4.885 -4.337 -4.600 D 52 50 3 53 3 0 0 39 58 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 39 - C - - MR 54 53 3 56 3 1 1 40 58 -9.667 -0.007 -7.984 -4.506 1.942 -5.109 -3.579 D 55 53 3 56 3 0 0 38 57 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 38 - A - - MR 57 56 3 59 5 1 1 39 57 -8.347 -0.016 -8.163 -8.375 -9.266 1.954 -4.885 -4.337 -4.600 D 58 56 3 59 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 37 G U - - MP 60 59 3 64 6 2 2 38 56 -9.832 -9.771 -0.013 -8.547 -8.827 -9.222 -5.122 -3.696 -5.389 0.305 -7.072 -7.505 -2.511 -1.342 -4.856 -0.519 -5.408 3.703 -2.698 -6.477 -4.415 -3.956 ML 61 59 3 64 6 1 1 37 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 36 C G - - MP 66 65 6 70 6 2 2 35 54 -9.832 -9.771 -0.013 -8.547 -8.827 -9.222 -7.443 -7.588 -6.555 -3.812 -4.921 -6.591 3.937 -6.130 -6.921 -3.780 -6.625 -5.775 -1.923 -7.343 -2.932 -5.724 ML 67 65 6 70 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 35 C G - - MP 72 71 6 76 4 2 2 33 52 -8.386 -8.593 -0.019 -7.007 -7.443 -7.588 -6.555 -3.812 -4.921 -6.591 3.937 -6.130 -6.921 -3.780 -6.625 -5.775 -1.923 -7.343 -2.932 -5.724 ML 73 71 6 76 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - A - - - ML 78 77 6 80 3 1 1 31 49 -9.667 -0.007 -7.984 1.954 -4.885 -4.337 -4.600 D 79 77 6 80 3 0 0 30 48 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 1 32 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 34 - G - - MR 81 80 3 83 3 1 1 30 48 -9.667 -0.007 -7.984 -3.937 -5.426 1.953 -4.672 D 82 80 3 83 3 0 0 28 47 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 33 - A - - MR 84 83 3 86 5 1 1 29 47 -8.347 -0.016 -8.163 -8.375 -9.266 1.885 -3.722 -3.610 -2.753 D 85 83 3 86 5 0 0 28 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 32 C G - - MP 87 86 3 91 6 2 2 28 46 -9.832 -9.771 -0.013 -8.547 -8.827 -9.222 -7.443 -7.588 -6.555 -3.812 -4.921 -6.591 3.937 -6.130 -6.921 -3.780 -6.625 -5.775 -1.923 -7.343 -2.932 -5.724 ML 88 86 3 91 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 31 G C - - MP 93 92 6 97 4 2 2 26 44 -8.226 -9.471 -0.031 -5.925 -6.572 -4.128 -6.941 -1.189 -7.667 -5.460 -2.545 -7.374 -5.542 3.860 -5.760 -1.959 -2.869 -1.898 -4.703 -5.892 ML 94 92 6 97 4 1 1 25 44 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 25 43 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 23 42 -12.737 -14.007 -2.036 -0.404 IL 97 97 5 97 4 1 1 26 44 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 26 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 30 - U - - MR 99 98 6 101 3 1 1 24 42 -9.667 -0.007 -7.984 -0.615 -0.910 -2.327 1.387 D 100 98 6 101 3 0 0 23 41 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 25 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 29 - A - - MR 102 101 3 104 5 1 1 23 41 -8.347 -0.016 -8.163 -8.375 -9.266 1.874 -2.805 -3.429 -3.350 D 103 101 3 104 5 0 0 22 40 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 28 C G - - MP 105 104 3 109 6 2 2 22 40 -9.832 -9.771 -0.013 -8.547 -8.827 -9.222 -5.787 -5.653 -5.365 -1.760 -3.924 -5.728 3.705 -4.749 -5.383 0.244 -5.625 -3.476 -0.406 -5.822 -1.590 -4.184 ML 106 104 3 109 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 27 c g - - MP 111 110 6 115 4 2 2 20 38 -8.386 -8.593 -0.019 -7.007 -3.267 -2.977 -3.350 0.481 -3.163 -4.130 2.443 -3.543 -3.440 2.363 -1.507 -0.993 0.590 -1.806 -0.959 -2.400 ML 112 110 6 115 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - G - - - ML 117 116 6 119 3 1 1 17 35 -9.335 -0.008 -7.989 -3.937 -5.426 1.953 -4.672 D 118 116 6 119 3 0 0 17 35 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - A - - - ML 120 119 3 122 3 1 1 16 34 -9.335 -0.008 -7.989 1.661 -1.793 -1.516 -2.320 D 121 119 3 122 3 0 0 16 34 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - G - - - ML 123 122 3 125 3 1 1 15 32 -9.335 -0.008 -7.989 -3.937 -5.426 1.953 -4.672 D 124 122 3 125 3 0 0 15 33 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - U - - - ML 126 125 3 128 3 1 1 13 30 -5.185 -0.046 -7.989 -2.192 -2.655 -3.516 1.822 D 127 125 3 128 3 0 0 12 28 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 16 32 -1.651 -0.661 -4.351 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 129 128 3 131 2 1 1 1 1 * 0.000 1.888 -3.997 -2.600 -3.793 D 130 128 3 131 2 0 0 0 0 * 0.000 IL 131 131 3 131 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 132 131 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME s2m ACC RF00164 DESC Coronavirus 3' stem-loop II-like motif (s2m) LENG 43 MAXL 103 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 15 11:44:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 39 EFFN 20.085571 CKSUM 2134133334 STATS LOCAL MSV -7.1994 0.71950 STATS LOCAL VITERBI -7.4166 0.71950 STATS LOCAL FORWARD -4.2547 0.71950 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46401 1.28586 1.02263 2.02015 1.38629 1.38629 1.38629 1.38629 0.03257 3.58023 5.47942 0.79882 0.59758 0.00000 * 1 2.17151 0.96927 1.01390 1.93910 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 2 1.06147 2.31911 0.96491 1.74485 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 3 1.13078 3.54981 0.83090 1.54725 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.03422 5.47942 3.52441 1.46634 0.26236 1.09861 0.40547 4 1.45284 1.63577 1.92102 0.85606 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.00860 5.45380 5.45380 1.46634 0.26236 0.24930 1.51116 5 1.54727 2.10637 0.46214 3.33651 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 6 4.92189 0.11712 4.88965 2.34644 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 7 5.43182 0.01580 5.74980 4.81349 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 8 3.05047 5.51611 0.05955 5.04342 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 9 0.89626 1.23118 1.65782 2.21268 11 a - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 10 4.19520 4.79296 0.03482 4.52252 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 11 2.93070 3.47581 0.09622 4.90071 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 12 6.06388 0.01182 6.07758 4.94371 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 13 6.02019 0.01208 6.04740 4.93197 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 14 0.01079 5.89331 5.45885 5.59631 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 15 6.13877 0.01139 6.12835 4.96297 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 16 4.36650 5.44043 0.04434 3.63672 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 17 4.83102 0.12029 2.57276 3.53931 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 18 3.28993 0.78234 0.84411 2.58402 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 19 5.00415 6.16764 0.01289 5.52013 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 20 0.17266 2.77520 2.58301 3.87779 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 21 5.00415 6.16764 0.01289 5.52013 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 22 3.19350 3.96839 4.58714 0.07269 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03814 3.40370 5.47942 0.23443 1.56552 1.09861 0.40547 23 0.04546 5.12272 3.45251 4.98791 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 24 3.18527 0.89114 0.69257 3.03329 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 25 3.85615 2.59413 0.11207 4.58942 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 26 0.04979 3.54095 4.68380 4.57125 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 27 1.91912 2.17464 3.87366 0.33013 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 28 5.53595 0.02669 5.37121 4.03149 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 29 5.16864 6.30108 0.00975 6.13044 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 30 0.04640 4.85477 4.84431 3.51747 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 31 5.00415 6.16764 0.01289 5.52013 34 G - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 32 5.10933 6.19362 0.01060 6.00516 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 33 5.13221 6.23445 0.01027 6.05250 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 34 5.09256 3.84117 5.03950 0.03468 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 35 0.01079 5.89331 5.45885 5.59631 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 36 5.43182 0.01580 5.74980 4.81349 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 37 0.01079 5.89331 5.45885 5.59631 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 38 3.82317 5.07399 0.03719 4.78100 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03422 5.47942 3.52441 1.46634 0.26236 1.09861 0.40547 39 3.62534 0.49096 2.05213 1.45731 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.00860 5.45380 5.45380 1.46634 0.26236 2.20431 0.11690 40 0.90165 1.99774 1.55042 1.40120 43 a - - > 1.38629 1.38629 1.38629 1.38629 0.00860 5.45380 5.45380 1.46634 0.26236 2.20431 0.11690 41 1.57521 0.85498 3.41479 1.09403 44 c - - > 1.38629 1.38629 1.38629 1.38629 0.00860 5.45380 5.45380 1.46634 0.26236 0.24930 1.51116 42 1.90158 0.97827 2.19420 1.01263 45 c - - > 1.38629 1.38629 1.38629 1.38629 0.00838 5.47942 5.47942 1.46634 0.26236 1.09861 0.40547 43 1.15632 1.22461 1.97230 1.37694 46 a - - : 1.38629 1.38629 1.38629 1.38629 0.02839 3.57605 * 0.27645 1.42076 0.00000 * //