INFERNAL1/a [1.1.5 | Sep 2023] NAME Hammerhead_1 ACC RF00163 DESC Hammerhead ribozyme (type I) STATES 144 NODES 37 CLEN 45 W 538 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 20:56:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00163/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 29 EFFN 29.000000 CKSUM 822789652 NULL 0.000 0.000 0.000 0.000 GA 34.00 TC 34.00 NC 33.90 EFP7GF -12.9656 0.72573 ECMLC 0.76360 -3.25958 4.08241 1600000 326581 0.003674 ECMGC 0.39556 -19.19884 -4.94233 1600000 112510 0.003555 ECMLI 0.76178 -2.10075 5.07192 1600000 283238 0.004237 ECMGI 0.41747 -16.39366 -3.45555 1600000 88678 0.004511 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 538 1142 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 IL 1 1 2 1 6 1 15 540 1144 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 15 540 1144 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 124 a u - - MP 3 2 3 7 6 2 20 539 1143 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -4.451 -4.003 -4.519 2.877 -4.523 -0.009 1.612 -1.596 -4.640 1.170 -5.121 -0.266 -0.744 -4.593 -2.305 -3.571 ML 4 2 3 7 6 1 14 536 1140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 13 536 1140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 10 530 1135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 14 538 1142 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 15 538 1142 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 123 U A - - MP 9 8 6 13 6 2 20 537 1141 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -7.569 -7.747 -0.816 -4.042 0.742 -7.274 -1.235 -6.392 -0.451 -4.018 -0.560 -6.012 3.540 -7.507 -3.224 -5.953 ML 10 8 6 13 6 1 13 534 1139 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 13 534 1138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 10 529 1133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 14 536 1140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 536 1140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 122 c g - - MP 15 14 6 19 6 2 19 535 1139 -11.083 -11.023 -0.031 -9.799 -5.771 -10.474 -5.133 -5.037 -5.182 1.331 -4.326 -0.005 2.831 -0.522 -5.125 -1.014 -5.638 -2.902 1.698 -5.365 -0.913 -3.993 ML 16 14 6 19 6 1 13 533 1137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 13 532 1137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 9 528 1132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 14 534 1138 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 14 534 1138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 121 c g - - MP 21 20 6 25 6 2 18 533 1137 -11.058 -10.997 -0.005 -9.774 -10.054 -10.449 -6.642 -6.523 -6.407 -2.474 -1.560 -6.918 2.981 -5.839 -6.370 -2.282 -6.724 -4.282 2.012 -6.717 1.193 -0.119 ML 22 20 6 25 6 1 13 531 1135 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 13 531 1135 -7.828 -6.557 -0.684 -6.535 -1.669 -4.748 -0.359 -1.336 1.153 -0.736 D 24 20 6 25 6 0 9 527 1131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 14 532 1136 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 14 532 1136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 120 a u - - MP 27 26 6 31 6 2 16 531 1135 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -0.569 -2.149 -2.869 2.508 -2.856 -2.591 1.637 -3.217 -2.936 -0.051 -3.509 -0.792 1.452 -2.223 -1.120 -0.783 ML 28 26 6 31 6 1 12 529 1133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 11 528 1132 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 9 526 1130 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 13 530 1134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 13 530 1134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 119 g c - - MP 33 32 6 37 4 2 15 529 1133 -10.067 -2.969 -0.203 -8.688 -4.263 0.086 -4.291 0.638 -4.707 -5.015 1.462 -4.788 -1.730 2.862 -1.756 -0.475 -0.134 -0.622 -2.505 -3.404 ML 34 32 6 37 4 1 12 528 1132 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 10 526 1131 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 9 525 1129 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 13 529 1133 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 14 529 1134 -0.667 -1.462 -7.165 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 39 38 6 41 3 1 13 527 1131 -10.989 -0.003 -9.643 -1.534 1.783 -5.145 -2.444 D 40 38 6 41 3 0 8 524 1128 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 12 527 1131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 42 41 3 44 3 1 12 526 1130 -10.989 -0.003 -9.643 -1.765 -1.428 -4.567 1.719 D 43 41 3 44 3 0 8 523 1127 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 11 526 1130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 45 44 3 47 3 1 11 525 1129 -10.989 -0.003 -9.643 -5.686 -7.412 1.987 -6.439 D 46 44 3 47 3 0 7 522 1126 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 10 525 1129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 48 47 3 50 3 1 10 524 1128 -10.989 -0.003 -9.643 1.922 -5.300 -5.373 -2.625 D 49 47 3 50 3 0 7 521 1125 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 10 524 1128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - c - - - ML 51 50 3 53 3 1 9 523 1127 -10.989 -0.003 -9.643 0.033 0.892 -0.637 -1.065 D 52 50 3 53 3 0 6 520 1125 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 9 523 1127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 54 53 3 56 3 1 8 522 1126 -10.989 -0.003 -9.643 -5.138 -3.093 1.940 -5.781 D 55 53 3 56 3 0 6 520 1124 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 8 522 1126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 57 56 3 59 3 1 7 521 1125 -11.294 -0.002 -9.612 1.850 -3.468 -3.647 -2.158 D 58 56 3 59 3 0 5 519 1124 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 7 521 1125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 115 - C - - MR 60 59 3 62 2 1 6 520 1124 -11.615 -0.000 -4.591 1.813 -2.229 -2.104 D 61 59 3 62 2 0 5 519 1123 -4.432 -0.068 IR 62 62 3 62 2 1 6 520 1124 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 63 62 3 64 108 0 5 519 1123 [ BEGL 16 ] - - - - - - S 64 63 1 65 4 0 0 508 1112 -0.009 -9.121 -8.529 -9.169 [ MATP 17 ] 14 99 G C - - MP 65 64 1 69 6 2 2 508 1112 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -8.472 -0.647 -9.473 -2.851 -10.068 -6.875 -4.651 -9.540 -6.944 3.757 0.161 -1.078 -4.962 -7.227 -6.957 -8.322 ML 66 64 1 69 6 1 1 505 1109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 1 69 6 1 1 504 1108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 1 69 6 0 0 499 1103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 506 1111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 506 1110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 98 U A - - MP 71 70 6 75 6 2 2 506 1110 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -7.667 -7.530 -7.138 1.597 -5.640 -7.435 -1.325 -6.473 -7.170 -3.786 -7.372 -5.391 3.482 -7.680 0.287 -5.992 ML 72 70 6 75 6 1 1 503 1107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 502 1106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 498 1102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 504 1109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 504 1108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 97 C G - - MP 77 76 6 81 6 2 2 504 1108 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -7.875 -8.141 -7.205 -4.362 0.862 -7.358 3.541 -6.475 -7.305 -4.324 0.015 -6.507 -2.281 -7.717 0.213 -6.106 ML 78 76 6 81 6 1 1 501 1106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 500 1104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 497 1101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 503 1107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 502 1106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 96 C G - - MP 83 82 6 87 4 2 2 502 1106 -10.067 -10.274 -0.074 -4.377 -7.816 -8.052 -7.173 -4.250 -1.393 -7.342 3.474 -6.451 1.565 -4.197 -0.971 -6.356 -2.237 -7.673 -0.609 -6.065 ML 84 82 6 87 4 1 1 500 1104 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 497 1102 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 86 82 6 87 4 0 0 496 1100 -4.568 -4.250 -2.265 -0.520 IL 87 87 5 87 4 1 1 501 1105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 501 1105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - C - - - ML 89 88 6 91 3 1 1 500 1104 -10.922 -0.003 -9.576 -0.302 1.295 -2.385 -0.879 D 90 88 6 91 3 0 0 494 1098 -8.315 -0.245 -2.706 IL 91 91 3 91 3 1 1 498 1102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - A - - - ML 92 91 3 94 3 1 1 499 1103 -1.549 -0.606 -9.643 1.829 -2.684 -2.063 -4.250 D 93 91 3 94 3 0 0 393 997 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 533 1137 -0.044 -5.069 -12.023 0.000 0.000 0.000 0.000 [ MATL 23 ] 92 - A - - - ML 95 94 3 97 3 1 1 14 33 -10.989 -0.003 -9.643 1.567 -0.485 -1.997 -3.778 D 96 94 3 97 3 0 0 16 34 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 93 - A - - - ML 98 97 3 100 3 1 1 13 31 -10.989 -0.003 -9.643 1.904 -2.404 -5.034 -4.759 D 99 97 3 100 3 0 0 15 33 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 94 - U - - - ML 101 100 3 103 3 1 1 11 29 -10.989 -0.003 -9.643 -4.601 0.080 -5.430 1.525 D 102 100 3 103 3 0 0 13 32 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 95 - A - - - ML 104 103 3 106 2 1 1 1 1 * 0.000 1.824 -4.430 -1.920 -2.752 D 105 103 3 106 2 0 0 0 0 * 0.000 IL 106 106 3 106 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 107 106 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 108 63 1 109 3 0 0 27 50 -10.989 -0.003 -9.643 IL 109 109 2 109 3 1 1 30 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 100 - G - - - ML 110 109 2 112 3 1 1 27 50 -10.989 -0.003 -9.643 -4.687 -5.850 1.809 -1.185 D 111 109 2 112 3 0 0 26 49 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 29 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 101 - A - - - ML 113 112 3 115 3 1 1 26 49 -10.989 -0.032 -5.551 1.860 -4.468 -2.550 -2.702 D 114 112 3 115 3 0 0 25 48 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 28 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 102 - A - - - ML 116 115 3 118 5 1 1 25 48 -5.538 -0.035 -9.734 -9.946 -10.838 1.843 -4.325 -2.581 -2.360 D 117 115 3 118 5 0 0 24 47 -5.847 -0.378 -5.109 -3.484 -3.396 IL 118 118 3 118 5 1 1 29 52 -1.148 -0.993 -5.239 -7.071 -6.345 0.000 0.000 0.000 0.000 [ MATP 32 ] 106 114 A U - - MP 119 118 3 123 6 2 2 16 27 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -6.941 -5.604 -7.005 3.878 -9.229 -10.383 -4.705 -7.025 -6.697 -2.265 -7.364 -0.129 -4.647 -8.434 -6.537 -5.685 ML 120 118 3 123 6 1 1 16 28 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 3 123 6 1 1 16 28 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 3 123 6 0 0 14 26 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 18 29 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 17 28 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 107 113 C G - - MP 125 124 6 129 6 2 2 14 25 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -7.748 -7.945 -7.135 -4.106 -5.523 -7.325 3.579 0.720 -7.218 -4.031 -0.825 -6.168 -0.472 -7.622 -0.137 -6.013 ML 126 124 6 129 6 1 1 14 26 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 14 25 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 12 24 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 16 27 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 15 26 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 108 112 G C - - MP 131 130 6 135 6 2 2 12 23 -11.083 -11.023 -0.005 -9.799 -10.079 -10.474 -5.185 -0.545 -5.017 0.627 -6.092 -1.313 -1.222 -5.693 -1.855 3.168 -5.695 -0.380 1.374 -4.877 -3.218 -3.989 ML 132 130 6 135 6 1 1 12 23 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 12 23 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 10 21 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 14 25 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 13 24 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 109 111 c g - - MP 137 136 6 141 3 2 2 10 19 -2.360 * -0.313 -3.164 -1.244 -1.593 -0.284 -0.031 -4.197 2.879 -0.174 -0.826 0.790 -3.965 -1.883 0.071 -3.491 0.138 -2.552 ML 138 136 6 141 3 1 1 9 18 -1.000 * -1.000 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 3 1 1 9 18 -1.000 * -1.000 0.368 -0.385 -0.191 0.094 D 140 136 6 141 3 0 0 8 17 -1.000 * -1.000 IL 141 141 5 141 3 1 1 9 18 -2.905 * -0.207 0.000 0.000 0.000 0.000 IR 142 142 6 142 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 143 142 6 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Hammerhead_1 ACC RF00163 DESC Hammerhead ribozyme (type I) LENG 45 MAXL 584 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 20:56:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00163/CM NSEQ 29 EFFN 29.000000 CKSUM 822789652 STATS LOCAL MSV -7.4621 0.72573 STATS LOCAL VITERBI -7.9574 0.72573 STATS LOCAL FORWARD -3.8595 0.72573 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23529 1.39281 1.35680 1.59263 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 0.00000 * 1 0.75835 1.28542 1.62474 2.84620 1 a - - ( 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 2 3.20845 2.02225 2.37336 0.30917 2 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 3 1.81420 0.59262 3.15279 1.42120 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02700 5.74300 3.75367 1.46634 0.26236 1.09861 0.40547 4 4.26519 0.66287 4.02262 0.79258 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00656 5.72257 5.72257 1.46634 0.26236 0.24183 1.53802 5 0.86717 1.51398 2.20373 1.38855 5 a - - ( 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 6 1.76893 1.72154 0.62401 2.16365 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 7 2.44931 0.15007 4.95222 3.08057 7 C - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 8 2.60976 2.37594 4.55172 0.19483 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 9 5.32753 6.52376 0.00925 5.84922 9 G - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 10 0.05437 5.05976 5.11079 3.20551 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 11 1.36327 0.76819 1.82764 2.12417 11 c - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 12 4.94771 3.53022 0.04181 5.39313 12 G - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 13 0.10375 3.79044 3.91416 2.88237 13 A - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 14 3.00912 5.65448 0.05809 5.62801 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 15 1.65862 3.58873 4.92006 0.25532 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 16 5.35414 0.17363 2.69235 2.44247 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 17 5.28736 0.33143 1.50946 2.88206 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.05259 5.74300 3.03607 1.46634 0.26236 1.09861 0.40547 18 1.59530 0.48880 3.03965 1.99557 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00673 5.69715 5.69715 1.46634 0.26236 0.12530 2.13908 19 0.11866 3.24639 2.81618 4.33188 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.42153 1.07661 5.74300 3.58977 0.02799 1.09861 0.40547 20 0.30044 1.72234 2.77041 4.00498 92 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 21 0.06624 3.05266 4.87554 4.68487 93 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 22 4.57554 1.33097 5.15018 0.32895 94 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 23 0.12188 4.45720 2.71746 3.29383 95 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 24 1.50255 5.33264 0.26629 5.05347 96 G - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 25 2.05884 5.40130 0.14866 5.11237 97 G - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 26 0.35779 5.11223 2.27922 1.64823 98 A - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 27 5.62247 0.12346 2.61253 3.23965 99 C - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 28 4.63473 5.44151 0.13237 2.20778 100 G - - , 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 29 0.09694 4.48342 3.15384 3.25946 101 A - - , 1.38629 1.38629 1.38629 1.38629 0.02663 5.74300 3.76909 1.46634 0.26236 1.09861 0.40547 30 0.10864 4.38422 3.17529 3.02231 102 A - - , 1.38629 1.38629 1.38629 1.38629 0.02755 3.73360 5.72294 1.13647 0.38706 0.24516 1.52593 31 0.08386 5.63608 2.63721 5.23771 106 A - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 32 5.20002 0.16263 3.19667 2.26648 107 C - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 33 1.94148 2.91031 0.46670 1.74308 108 G - - < 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 34 2.24427 0.54707 1.80553 1.89072 109 C - - < 1.38629 1.38629 1.38629 1.38629 0.20916 1.68452 5.74300 0.03420 3.39260 1.09861 0.40547 35 1.77493 1.94128 0.59366 2.00486 111 G - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 36 1.70232 0.46114 3.29206 1.89715 112 C - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 37 3.03679 5.22941 0.17703 2.21736 113 G - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 38 5.34447 4.19242 5.36996 0.02484 114 U - - > 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 39 4.56847 0.12995 2.93145 2.84447 115 C - - , 1.38629 1.38629 1.38629 1.38629 0.14020 2.05880 5.74300 1.10536 0.40211 1.09861 0.40547 40 2.49209 0.57754 1.58498 1.89024 119 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 41 1.46728 2.31396 1.43945 0.83581 120 u - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 42 1.29776 4.11659 0.45263 2.59559 121 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 43 1.56236 2.33495 0.73310 1.54588 122 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 44 0.13174 5.26043 2.19547 4.97205 123 A - - ) 1.38629 1.38629 1.38629 1.38629 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 45 3.08607 1.56428 1.56884 0.62214 124 U - - ) 1.38629 1.38629 1.38629 1.38629 0.00322 5.73979 * 1.46634 0.26236 0.00000 * //