INFERNAL1/a [1.1.5 | Sep 2023] NAME U7 ACC RF00066 DESC U7 small nuclear RNA STATES 190 NODES 53 CLEN 62 W 80 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 21:36:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00066/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 49 EFFN 9.986023 CKSUM 1896368943 NULL 0.000 0.000 0.000 0.000 GA 34.00 TC 34.00 NC 33.90 EFP7GF -15.9578 0.71897 ECMLC 0.62171 -9.04571 0.61506 1600000 487144 0.002463 ECMGC 0.39186 -19.23995 -4.83471 1600000 113136 0.003536 ECMLI 0.60311 -7.24774 1.78960 1600000 279441 0.004294 ECMGI 0.42128 -14.40639 -1.77413 1600000 81889 0.004885 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 101 -8.665 -8.872 -0.143 -3.482 IL 1 1 2 1 4 1 20 84 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 83 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - a - - - ML 3 2 3 5 3 1 19 80 101 -9.486 -0.007 -8.140 0.523 -0.134 -0.409 -0.155 D 4 2 3 5 3 0 16 79 99 -7.916 -0.992 -1.020 IL 5 5 3 5 3 1 19 82 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 3 - A - - - ML 6 5 3 8 3 1 18 79 100 -9.558 -0.007 -8.212 1.482 -2.030 -0.403 -2.275 D 7 5 3 8 3 0 16 78 99 -7.155 -0.620 -1.547 IL 8 8 3 8 3 1 18 81 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 4 - G - - - ML 9 8 3 11 3 1 17 78 99 -9.608 -0.061 -4.637 0.282 -1.579 1.145 -2.068 D 10 8 3 11 3 0 14 77 97 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 17 80 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 5 - U - - - ML 12 11 3 14 3 1 16 77 98 -9.554 -0.136 -3.495 -0.032 -2.250 -2.688 1.409 D 13 11 3 14 3 0 14 76 96 -7.222 -2.735 -0.246 IL 14 14 3 14 3 1 16 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 6 - G - - - ML 15 14 3 17 3 1 15 76 97 -1.791 -0.580 -4.575 -0.215 -2.372 1.287 -0.987 D 16 14 3 17 3 0 14 76 96 -0.362 -3.838 -2.717 IL 17 17 3 17 3 1 15 76 96 -3.330 -0.176 -6.030 0.000 0.000 0.000 0.000 [ MATL 6 ] 8 - U - - - ML 18 17 3 20 3 1 14 75 95 -9.558 -0.007 -8.212 -1.351 -1.677 -3.127 1.669 D 19 17 3 20 3 0 11 73 94 -7.155 -2.668 -0.259 IL 20 20 3 20 3 1 14 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 9 - U - - - ML 21 20 3 23 3 1 13 74 94 -9.558 -0.062 -4.626 -1.487 -1.698 -3.186 1.689 D 22 20 3 23 3 0 10 73 93 -7.155 -0.620 -1.547 IL 23 23 3 23 3 1 13 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 10 - A - - - ML 24 23 3 26 3 1 13 73 93 -9.555 -0.109 -3.807 1.089 -1.418 -1.683 0.248 D 25 23 3 26 3 0 8 71 91 -7.200 -2.713 -0.250 IL 26 26 3 26 3 1 13 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 11 - c - - - ML 27 26 3 29 3 1 12 72 92 -9.453 -0.007 -8.108 -0.069 0.899 -1.537 -0.255 D 28 26 3 29 3 0 8 70 90 -8.149 -3.662 -0.124 IL 29 29 3 29 3 1 12 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - A - - - ML 30 29 3 32 3 1 11 71 91 -9.453 -0.007 -8.108 1.445 -2.155 -1.928 -0.341 D 31 29 3 32 3 0 8 70 90 -8.149 -0.278 -2.541 IL 32 32 3 32 3 1 10 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 13 - G - - - ML 33 32 3 35 3 1 10 70 90 -9.608 -0.007 -8.262 -2.083 -2.915 1.400 -0.011 D 34 32 3 35 3 0 5 69 89 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 9 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 14 - C - - - ML 36 35 3 38 3 1 10 69 89 -9.608 -0.007 -8.262 -1.636 1.748 -3.908 -1.989 D 37 35 3 38 3 0 4 68 88 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 9 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 15 - U - - - ML 39 38 3 41 3 1 9 68 88 -9.608 -0.007 -8.262 -4.327 -3.942 -5.131 1.947 D 40 38 3 41 3 0 4 67 87 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 8 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 16 - C - - - ML 42 41 3 44 3 1 8 67 87 -9.608 -0.007 -8.262 -3.992 1.861 -4.704 -1.907 D 43 41 3 44 3 0 3 66 86 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 7 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 17 - U - - - ML 45 44 3 47 3 1 7 66 86 -9.608 -0.007 -8.262 -4.327 -3.942 -5.131 1.947 D 46 44 3 47 3 0 3 65 85 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 6 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 18 - U - - - ML 48 47 3 50 3 1 6 65 85 -9.608 -0.007 -8.262 -2.892 -2.770 -2.630 1.831 D 49 47 3 50 3 0 2 64 84 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 5 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 19 - U - - - ML 51 50 3 53 3 1 5 64 84 -9.608 -0.031 -5.644 -1.313 -2.449 -2.371 1.687 D 52 50 3 53 3 0 1 62 83 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 5 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 20 - u - - - ML 54 53 3 56 3 1 4 63 83 -9.584 -0.007 -8.238 -0.534 -0.902 -0.287 0.967 D 55 53 3 56 3 0 1 61 82 -6.743 -2.256 -0.356 IL 56 56 3 56 3 1 4 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 21 - A - - - ML 57 56 3 59 3 1 3 62 82 -9.584 -0.468 -1.858 1.639 -2.043 -1.319 -2.046 D 58 56 3 59 3 0 1 61 81 -6.743 -2.256 -0.356 IL 59 59 3 59 3 1 5 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 22 - G - - - ML 60 59 3 62 3 1 5 61 81 -9.125 -0.009 -7.779 -0.535 -1.201 1.361 -1.711 D 61 59 3 62 3 0 0 60 80 -9.380 -0.196 -2.992 IL 62 62 3 62 3 1 2 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 23 - A - - - ML 63 62 3 65 3 1 5 60 80 -9.584 -0.007 -8.238 1.487 -2.486 -2.646 -0.219 D 64 62 3 65 3 0 0 58 79 -6.743 -2.256 -0.356 IL 65 65 3 65 3 1 2 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 24 - A - - - ML 66 65 3 68 3 1 5 59 79 -9.584 -0.007 -8.238 1.686 -2.941 -1.317 -1.992 D 67 65 3 68 3 0 0 57 78 -6.743 -2.256 -0.356 IL 68 68 3 68 3 1 2 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - U - - - ML 69 68 3 71 3 1 4 58 78 -9.584 -0.007 -8.238 -4.290 -3.909 -5.094 1.946 D 70 68 3 71 3 0 0 56 77 -6.743 -2.256 -0.356 IL 71 71 3 71 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - U - - - ML 72 71 3 74 3 1 4 57 77 -9.584 -0.007 -8.238 -4.290 -3.909 -5.094 1.946 D 73 71 3 74 3 0 0 55 76 -6.743 -2.256 -0.356 IL 74 74 3 74 3 1 1 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - U - - - ML 75 74 3 77 3 1 3 56 76 -9.584 -0.007 -8.238 -4.290 -3.909 -5.094 1.946 D 76 74 3 77 3 0 0 55 75 -6.743 -0.902 -1.135 IL 77 77 3 77 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - G - - - ML 78 77 3 80 3 1 3 55 75 -9.608 -0.007 -8.262 -1.504 -1.277 1.565 -1.852 D 79 77 3 80 3 0 0 54 74 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - U - - - ML 81 80 3 83 3 1 2 54 74 -9.608 -0.007 -8.262 -4.327 -3.942 -5.131 1.947 D 82 80 3 83 3 0 0 53 73 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - C - - - ML 84 83 3 86 3 1 2 53 73 -9.608 -0.007 -8.262 -4.856 1.955 -5.403 -3.940 D 85 83 3 86 3 0 0 52 72 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - U - - - ML 87 86 3 89 3 1 2 52 72 -9.608 -0.007 -8.262 -2.162 -0.697 -3.261 1.611 D 88 86 3 89 3 0 0 51 71 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - A - - - ML 90 89 3 92 3 1 1 51 71 -9.608 -0.007 -8.262 1.606 -2.712 -2.873 -0.584 D 91 89 3 92 3 0 0 50 70 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - G - - - ML 93 92 3 95 3 1 1 50 70 -9.608 -0.007 -8.262 -4.274 -5.812 1.963 -5.007 D 94 92 3 95 3 0 0 49 69 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - c - - - ML 96 95 3 98 3 1 1 49 69 -9.608 -0.007 -8.262 -0.941 0.772 -0.812 0.265 D 97 95 3 98 3 0 0 48 68 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - A - - - ML 99 98 3 101 3 1 1 48 68 -3.750 -0.117 -8.250 1.494 -1.839 -2.523 -0.455 D 100 98 3 101 3 0 0 46 67 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 48 68 -2.703 -0.297 -4.941 0.000 0.000 0.000 0.000 [ MATR 34 ] - 75 - a - - MR 102 101 3 104 3 1 1 47 67 -9.933 -0.006 -8.250 0.369 0.060 -1.322 0.340 D 103 101 3 104 3 0 0 45 65 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 48 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 74 - c - - MR 105 104 3 107 3 1 1 46 66 -9.933 -0.006 -8.250 0.292 0.459 -0.810 -0.266 D 106 104 3 107 3 0 0 44 64 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 47 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 73 - C - - MR 108 107 3 110 5 1 1 45 65 -8.606 -0.014 -8.422 -8.634 -9.526 -1.221 1.532 -2.134 -1.148 D 109 107 3 110 5 0 0 43 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 37 72 G C - - MP 111 110 3 115 6 2 2 44 64 -10.013 -9.952 -0.011 -8.729 -9.008 -9.403 -7.557 -4.517 -8.669 -1.863 -8.801 -2.321 -3.429 -8.811 -5.902 3.912 -6.096 -2.425 -3.796 -6.076 -5.732 -7.683 ML 112 110 3 115 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 43 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 38 71 G C - - MP 117 116 6 121 6 2 2 42 62 -10.013 -9.952 -0.011 -8.729 -9.008 -9.403 -7.516 -4.542 -8.658 -1.854 -8.909 -5.803 -3.570 -8.592 -5.895 3.930 -6.118 -2.415 -3.934 -6.189 -5.879 -7.507 ML 118 116 6 121 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 41 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 39 70 u g - - MP 123 122 6 127 6 2 2 40 60 -10.013 -3.747 -0.122 -8.729 -9.008 -9.403 -4.779 -4.700 -4.704 -0.837 -3.642 -5.350 2.036 -4.336 -4.674 -0.660 -5.105 1.162 1.320 -4.949 2.464 -3.520 ML 124 122 6 127 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 39 59 -2.654 -0.343 -6.875 -5.043 -6.149 0.000 0.000 0.000 0.000 [ MATP 40 ] 40 67 u a - - MP 129 128 6 133 6 2 2 38 58 -10.013 -9.952 -0.011 -8.729 -9.008 -9.403 -4.687 -4.549 -4.636 1.379 -3.568 -5.334 1.915 -4.248 -4.578 -0.400 -5.033 -2.339 2.929 -4.862 -0.803 -3.393 ML 130 128 6 133 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 33 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 41 66 U A - - MP 135 134 6 139 6 2 2 36 56 -3.173 -9.952 -0.181 -8.729 -9.008 -9.403 -5.937 -5.971 -5.513 -2.031 -4.027 -5.841 2.015 -4.873 -5.544 -1.889 -5.789 -3.933 3.345 -5.916 -0.089 -4.331 ML 136 134 6 139 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 33 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 35 55 -4.174 -0.484 -2.355 -6.092 -6.869 -6.529 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 34 54 -3.563 -0.202 -7.074 -5.242 -6.348 0.000 0.000 0.000 0.000 [ MATP 42 ] 43 64 u a - - MP 141 140 6 145 6 2 2 33 53 -10.013 -9.952 -0.011 -8.729 -9.008 -9.403 -5.601 -5.548 -5.302 -1.558 -3.915 -5.740 2.715 -4.718 -5.295 -1.386 -5.608 -3.394 2.763 -5.646 0.597 -4.077 ML 142 140 6 145 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 31 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 32 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 44 63 c g - - MP 147 146 6 151 6 2 2 31 51 -10.013 -9.952 -0.011 -8.729 -9.008 -9.403 -4.012 -3.896 -4.075 -0.027 -3.242 -4.904 2.801 -2.170 -4.011 0.881 -4.535 -1.739 2.087 -4.248 -0.842 -1.352 ML 148 146 6 151 6 1 1 29 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 29 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 30 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 45 62 c g - - MP 153 152 6 157 6 2 2 29 49 -4.256 -3.172 -0.427 -8.729 -9.008 -3.499 -4.515 -4.404 -4.497 0.337 -1.960 -5.223 2.647 -4.153 -4.441 -0.310 -4.913 -2.230 1.437 -4.710 2.018 -3.276 ML 154 152 6 157 6 1 1 26 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 24 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 30 50 -1.843 -1.185 -2.061 -5.798 -6.574 -6.235 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 28 48 -1.327 -1.562 -8.038 -6.205 -2.027 0.000 0.000 0.000 0.000 [ MATP 45 ] 48 59 g c - - MP 159 158 6 163 6 2 2 22 41 -9.727 -9.666 -0.072 -8.442 -8.722 -4.602 -3.874 -2.806 -3.781 1.290 -4.274 -4.441 1.122 -4.250 -4.082 2.878 -4.421 0.411 0.695 -3.711 -1.668 -2.747 ML 160 158 6 163 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 19 38 -11.795 -10.493 -1.144 -6.972 -6.990 -0.914 IL 163 163 5 163 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 49 58 g c - - MP 165 164 6 169 6 2 2 20 39 -9.830 -9.769 -0.109 -8.545 -8.825 -3.927 -3.994 -3.177 -3.945 1.023 -3.817 -4.653 1.472 -4.115 -4.110 2.717 -4.513 -0.888 1.566 -3.952 -1.306 -2.837 ML 166 164 6 169 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 19 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 17 35 -11.306 -10.005 -5.802 -6.484 -6.501 -0.061 IL 169 169 5 169 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 50 57 u a - - MP 171 170 6 175 4 2 2 18 37 -1.729 -8.433 -0.542 -6.848 -1.888 -2.088 -1.038 0.836 -1.307 -1.993 1.567 -2.410 -2.145 1.510 -2.716 -0.736 1.747 -2.223 0.603 -0.997 ML 172 170 6 175 4 1 1 17 35 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 17 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 17 35 -0.741 -4.121 -2.110 -3.154 IL 175 175 5 175 4 1 1 17 36 -4.457 -0.806 -1.406 -7.626 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 16 35 -2.997 -0.225 -5.697 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - u - - - ML 177 176 6 179 3 1 1 15 33 -9.608 -0.007 -8.262 -0.275 -0.293 -1.464 0.996 D 178 176 6 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - u - - - ML 180 179 3 182 3 1 1 14 32 -9.608 -0.007 -8.262 0.137 -0.562 -1.242 0.848 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - u - - - ML 183 182 3 185 3 1 1 12 30 -9.608 -0.097 -3.971 0.240 -0.611 -0.642 0.607 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - u - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -0.150 -0.942 0.058 0.620 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME U7 ACC RF00066 DESC U7 small nuclear RNA LENG 62 MAXL 123 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 21:36:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00066/CM NSEQ 49 EFFN 22.265930 CKSUM 1896368943 STATS LOCAL MSV -7.8522 0.71897 STATS LOCAL VITERBI -8.5728 0.71897 STATS LOCAL FORWARD -4.1965 0.71897 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50905 1.54190 1.51236 1.06562 1.38629 1.38629 1.38629 1.38629 0.14654 3.12443 2.38221 0.15463 1.94303 0.00000 * 1 0.98271 1.43012 1.66818 1.62032 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.00784 5.54589 5.54589 1.46634 0.26236 0.58385 0.81588 2 0.30332 3.05458 1.65037 3.79351 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.00741 5.60131 5.60131 1.46634 0.26236 0.16208 1.89961 3 1.17039 2.59792 0.52877 3.64975 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.04869 5.63887 3.12443 1.46634 0.26236 1.09861 0.40547 4 1.36897 3.84831 4.28638 0.34170 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.00744 5.59763 5.59763 1.46634 0.26236 0.14998 1.97128 5 1.57282 3.68948 0.41909 2.20806 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.38725 1.27066 3.20820 0.02516 3.69514 1.09861 0.40547 6 2.42764 2.76942 4.29355 0.17984 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.00741 5.60131 5.60131 1.46634 0.26236 2.59276 0.07776 7 2.54185 2.77472 4.31602 0.16776 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.04931 5.60131 3.11401 1.46634 0.26236 0.16208 1.89961 8 0.54421 2.70924 2.97974 1.19632 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.08566 5.59886 2.54608 1.46634 0.26236 2.64111 0.07395 9 1.46316 0.64745 2.70141 1.72593 11 C - - : 1.38629 1.38629 1.38629 1.38629 0.00803 5.52123 5.52123 1.46634 0.26236 3.53231 0.02967 10 0.30667 3.59176 3.17450 1.63608 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.00803 5.52123 5.52123 1.46634 0.26236 0.06025 2.83916 11 3.82909 4.45110 0.36455 1.30161 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 12 2.55601 0.13083 4.83402 3.29499 14 C - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 13 5.50333 5.13438 6.10362 0.01227 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 14 4.99973 0.07153 5.37864 2.85282 16 C - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 15 5.50333 5.13438 6.10362 0.01227 17 U - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 16 4.05155 3.94471 3.32349 0.07556 18 U - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 17 2.39664 3.76059 3.25177 0.16605 19 U - - : 1.38629 1.38629 1.38629 1.38629 0.02575 5.63887 3.82269 1.46634 0.26236 1.09861 0.40547 18 1.95692 2.15321 1.53547 0.64009 20 U - - : 1.38629 1.38629 1.38629 1.38629 0.00727 5.62039 5.62039 1.46634 0.26236 2.09782 0.13093 19 0.19631 3.04281 2.38243 3.26446 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.36493 5.62039 1.19690 1.46634 0.26236 2.09782 0.13093 20 1.89986 2.23410 0.35082 3.23876 22 G - - : 1.38629 1.38629 1.38629 1.38629 0.01038 5.26585 5.26585 1.46634 0.26236 0.08225 2.53886 21 0.29717 3.96866 4.15482 1.50286 23 A - - : 1.38629 1.38629 1.38629 1.38629 0.00727 5.62039 5.62039 1.46634 0.26236 2.09782 0.13093 22 0.17365 4.12735 2.35449 3.02940 24 A - - : 1.38629 1.38629 1.38629 1.38629 0.00727 5.62039 5.62039 1.46634 0.26236 2.09782 0.13093 23 5.47268 5.10713 6.07134 0.01264 25 U - - : 1.38629 1.38629 1.38629 1.38629 0.00727 5.62039 5.62039 1.46634 0.26236 2.09782 0.13093 24 5.47268 5.10713 6.07134 0.01264 26 U - - : 1.38629 1.38629 1.38629 1.38629 0.00727 5.62039 5.62039 1.46634 0.26236 2.09782 0.13093 25 5.47268 5.10713 6.07134 0.01264 27 U - - : 1.38629 1.38629 1.38629 1.38629 0.00727 5.62039 5.62039 1.46634 0.26236 0.28163 1.40467 26 2.77718 2.23666 0.24840 2.97750 28 G - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 27 5.50333 5.13438 6.10362 0.01227 29 U - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 28 5.53231 0.01430 5.84733 4.91293 30 C - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 29 3.31790 1.87164 4.37337 0.22654 31 U - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 30 0.22719 4.06554 4.25515 1.76091 32 A - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 31 5.09551 6.26978 0.01173 5.61323 33 G - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 32 2.38567 0.74876 1.96194 1.22270 34 c - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 33 0.28289 3.01568 3.93276 1.72710 35 A - - : 1.38629 1.38629 1.38629 1.38629 0.09328 2.45920 5.63887 0.08122 2.55097 1.09861 0.40547 34 4.49915 3.98179 0.03391 5.63421 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 35 4.45197 5.55818 0.01947 5.58077 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 36 4.53335 1.43067 1.69609 0.56791 39 U - - < 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 37 1.71504 1.55286 3.73351 0.53701 40 U - - < 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 38 4.94776 1.44500 4.84677 0.28862 41 U - - < 1.38629 1.38629 1.38629 1.38629 0.20150 1.72073 5.63887 0.03929 3.25631 1.09861 0.40547 39 4.70077 0.86323 4.58310 0.58180 43 U - - < 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 40 3.21766 0.67043 2.14667 1.10386 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 41 2.67728 0.83217 3.53297 0.76158 45 u - - < 1.38629 1.38629 1.38629 1.38629 0.47190 2.45920 1.23552 0.48285 0.95978 1.09861 0.40547 42 1.85530 1.97431 0.53054 2.15030 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.08585 5.30042 2.56037 1.46634 0.26236 0.67275 0.71397 43 2.09101 1.77226 0.73117 1.49102 49 g - - < 1.38629 1.38629 1.38629 1.38629 0.04825 5.42785 3.15324 1.46634 0.26236 0.34515 1.23140 44 1.93480 1.46590 1.39814 0.97386 50 u - - < 1.38629 1.38629 1.38629 1.38629 0.30669 1.34613 5.55270 0.02953 3.53699 0.07937 2.57306 45 1.64867 1.60074 2.63476 0.62697 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 46 1.29566 1.83923 2.44763 0.73221 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 47 1.22347 1.88067 1.87600 0.91603 54 u - - _ 1.38629 1.38629 1.38629 1.38629 0.07614 5.63887 2.66277 1.46634 0.26236 1.09861 0.40547 48 1.59331 2.20547 1.27248 0.90039 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.47573 1.46487 1.91418 0.03264 3.43839 3.07322 0.04738 49 1.27026 1.42346 1.11227 1.90013 57 g - - > 1.38629 1.38629 1.38629 1.38629 0.03251 5.41530 3.59227 1.46634 0.26236 1.88261 0.16510 50 1.56201 0.76935 1.69773 1.93881 58 c - - > 1.38629 1.38629 1.38629 1.38629 0.00882 5.42785 5.42785 1.46634 0.26236 1.29396 0.32046 51 2.26906 0.68453 1.89905 1.41653 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.36677 1.19435 5.48954 0.26627 1.45344 0.04879 3.04451 52 1.77511 3.70567 0.31339 2.59043 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 53 1.23491 2.22453 0.66541 2.44232 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 54 0.76754 4.70345 0.66317 4.45950 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.20150 1.72073 5.63887 0.03929 3.25631 1.09861 0.40547 55 0.36137 4.96583 1.24755 4.69922 66 A - - > 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 56 0.57525 3.89655 1.46130 1.68639 67 A - - > 1.38629 1.38629 1.38629 1.38629 0.13281 2.11353 5.63887 0.18491 1.77893 1.09861 0.40547 57 1.98148 4.50696 0.40491 1.69246 70 G - - > 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 58 5.64626 0.02426 5.49286 4.11532 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 59 5.71940 0.02311 5.53537 4.15925 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 60 2.35787 0.25217 2.98997 2.55132 73 C - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 61 1.17472 0.96482 2.01281 1.73482 74 c - - : 1.38629 1.38629 1.38629 1.38629 0.00714 5.63887 5.63887 1.46634 0.26236 1.09861 0.40547 62 1.10260 1.29858 2.55003 1.14888 75 a - - : 1.38629 1.38629 1.38629 1.38629 0.00358 5.63531 * 1.46634 0.26236 0.00000 * //