Summary
SNORD29 clan
The SNORD29 clan contains the RNA families SNORD36, SNORD29, snoZ223, SNORD38, snosnR69, snosnR61, snosnR71, SNORD78, snoR69Y, snR47 and snoU36a. Researchers at the human snoRNA database (snoRNABase) have established that the following human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: SNORD29 and snR71, SNORD36 and snR47, SNORD38 and snR61 [1]. Researchers at the plant snoRNA database have established that the following arabadopsis, human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: snoU36a and U36a&SnR47, snoR69Y and U29&SnR71, snoZ223 and U38ab&SnR61, snoR69Y and SnR69 [2].
This clan contains 11 families and the total number of sequence regions in the clan is 10,823.
Literature references
- Lestrade L, Weber MJ;, Nucleic Acids Res. 2006;34:D158-D162.: snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. 16381836
- Brown JW, Echeverria M, Qu LH, Lowe TM, Bachellerie JP, Huttenhofer A, Kastenmayer JP, Green PJ, Shaw P, Marshall DF, Nucleic Acids Res 2003;31:432-435.: Plant snoRNA database. 12520043
Members
This clan contains the following 11 member families:
SNORD36 SNORD29 snoZ223 SNORD38 snosnR69 snosnR61 snosnR71 SNORD78 snoR69Y snR47 snoU36aExternal database links
| External sites: | 1: http://www-snorna.biotoul.fr/human_yeast/ 2: http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/conservation |
Secondary structures
This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.
Alignments
The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.
| Rfam family | Num. regions | Alignment |
|---|---|---|
| snoU36a (RF01302) | 924 (8.5%) | View |
| snR47 (RF01203) | 108 (1.0%) | View |
| snoR69Y (RF01198) | 897 (8.3%) | View |
| SNORD78 (RF00592) | 407 (3.8%) | View |
| snosnR71 (RF00479) | 68 (0.6%) | View |
| snosnR61 (RF00476) | 1,270 (11.7%) | View |
| snosnR69 (RF00475) | 169 (1.6%) | View |
| SNORD38 (RF00212) | 1,503 (13.9%) | View |
| snoZ223 (RF00135) | 1,044 (9.6%) | View |
| SNORD29 (RF00070) | 475 (4.4%) | View |
| SNORD36 (RF00049) | 3,958 (36.6%) | View |
